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2024
Phylogenomics reveals the evolutionary origins of lichenization in chlorophyte algae
Nature Communications
2024
Roast: a tool for reference-free optimization of supertranscriptome assemblies
BMC Bioinformatics
2024
Macrophages modulate fibrosis during newt lens regeneration
Stem Cell Research & Therapy
2024
Evolutionary trajectory of organelle-derived nuclear DNAs in the Triticum/Aegilops complex species
Plant Physiology
2024
Genomic Resources and Annotations for a Colonial Ascidian, the Light-Bulb Sea Squirt Clavelina lepadiformis
Genome Biology and Evolution
2024
On the specific status of eastern Mediterranean Dendrophyllia corals (Cnidaria, Anthozoa): Genetic characterization and speciation scenarios
Zoologica Scripta
2024
High fatty acid accumulation and coloration molecular mechanism of the elm mushroom (Pleurotus citrinopileatus)
Bioscience, Biotechnology, and Biochemistry
2023
A secreted protease-like protein in Zymoseptoria tritici is responsible for avirulence on Stb9 resistance gene in wheat
PLOS Pathogens
2023
Brain transcriptome of gobies inhabiting natural CO2 seeps reveal acclimation strategies to long‐term acidification
Evolutionary Applications
2023
De Novo Transcriptome Assembly and EST-SSR Marker Development and Application in Chrysosplenium macrophyllum
Genes
2023
De novo assembly and annotation of the Amblyomma hebraeum tick midgut transcriptome response to Ehrlichia ruminantium infection
PLOS Neglected Tropical Diseases
2023
Comparative phylotranscriptomics reveals ancestral and derived root nodule symbiosis programmes
Nature Plants
2022
Improving the Annotation of the Venom Gland Transcriptome of Pamphobeteus verdolaga, Prospecting Novel Bioactive Peptides
Toxins
2022
De novo transcriptome assembly and annotation of the third stage larvae of the zoonotic parasite Anisakis pegreffii
BMC Research Notes
2022
Functional R2R3-MYB transcription factor NsMYB1, regulating anthocyanin biosynthesis, was relative to the fruit color differentiation in Nitraria sibirica Pall.
BMC Plant Biology
2022
Rounding up the annual ryegrass genome: High-quality reference genome of Lolium rigidum
Frontiers in Genetics
2022
Music of metagenomics—a review of its applications, analysis pipeline, and associated tools
Functional & Integrative Genomics
2022
A CLAVATA3-like Gene Acts as a Gynoecium Suppression Function in White Campion
Molecular Biology and Evolution
2022
Quantification of the effects of chimerism on read mapping, differential expression and annotation following short-read de novo assembly.
F1000Research
2022
Transcriptome Analysis Reveals the Molecular Response to Salinity Challenge in Larvae of the Giant Freshwater Prawn Macrobrachium rosenbergii
Frontiers in Physiology
2022
Venomics survey of six myrmicine ants provides insights into the molecular and structural diversity of their peptide toxins
Insect Biochemistry and Molecular Biology
2022
De Novo Transcriptome Assembly and Analysis of the Flat Oyster Pathogenic Protozoa Bonamia Ostreae
Frontiers in Cellular and Infection Microbiology
2022
Transcriptome of the synganglion in the tick Ixodes ricinus and evolution of the cys-loop ligand-gated ion channel family in ticks
BMC Genomics
2022
Rapid evolution fuels transcriptional plasticity to ocean acidification
Global Change Biology
2022
Comparative Transcriptomics for Genes Related to Berberine and Berbamine Biosynthesis in Berberidaceae
Plants
2022
Transcriptome analysis of gonads and brain of giant freshwater prawn (Macrobrachium rosenbergii): screening and validation of genes related to germ cell development
Frontiers in Marine Science
2021
Transcriptome Profiling of the Pacific Oyster Crassostrea gigas Visceral Ganglia over a Reproduction Cycle Identifies Novel Regulatory Peptides
Marine Drugs
2021
Lipid exchanges drove the evolution of mutualism during plant terrestrialization
Science
2021
Modern transcriptome data processing algorithms: a review of methods and results of approbation
«System analysis and applied information science»
2021
Unstable Relationship Between Braarudosphaera bigelowii (= Chrysochromulina parkeae) and Its Nitrogen-Fixing Endosymbiont
Frontiers in Plant Science
2020
Transfer and Transcriptomic Profiling in Liver and Brain of European Eels (Anguilla anguilla) After Diet‐borne Exposure to Gold Nanoparticles
Environmental Toxicology and Chemistry
2020
Characterization and complete genome sequences of two novel variants of the family Closteroviridae from Chinese kiwifruit
PLOS ONE
2020
Siberian sturgeon multi-tissue reference transcriptome database
Database
2020
Venom Peptide Repertoire of the European Myrmicine Ant Manica rubida: Identification of Insecticidal Toxins
Journal of Proteome Research
2020
Development of a relevant strategy using de novo transcriptome assembly method for transcriptome comparisons between Muscovy and common duck species and their reciprocal inter-specific mule and hinny hybrids fed ad libitum and overfed
BMC Genomics
2020
Biological rhythms in the deep-sea hydrothermal mussel Bathymodiolus azoricus
Nature Communications
2020
Quick and efficient approach to develop genomic resources in orphan species: Application in Lavandula angustifolia
PLOS ONE
2020
Genome Sequence of the Euryhaline Javafish Medaka, Oryzias javanicus: A Small Aquarium Fish Model for Studies on Adaptation to Salinity
G3 Genes|Genomes|Genetics
2020
Transcriptome landscaping for gene mining and SSR marker development in Coriander (Coriandrum sativum L.)
Genomics
2020
De novo assembly and annotation of transcriptomes from two cultivars of Cannabis sativa with different cannabinoid profiles
Gene
2020
The development of early pioneer neurons in the annelid Malacoceros fuliginosus
BMC Evolutionary Biology
2020
Analysis of Natural Selection of Immune Genes in Spinibarbus caldwelli by Transcriptome Sequencing
Frontiers in Genetics
2020
Domestication modulates the expression of genes involved in neurogenesis in high‐quality eggs of Sander lucioperca
Molecular Reproduction and Development
2019
Comprehensive Influences of Overexpression of a MYB Transcriptor Regulating Anthocyanin Biosynthesis on Transcriptome and Metabolome of Tobacco Leaves
International Journal of Molecular Sciences
2019
Arctic charr brain transcriptome strongly affected by summer seasonal growth but only subtly by feed deprivation
BMC Genomics
2019
Embryonic development of a parthenogenetic vertebrate, the mourning gecko (Lepidodactylus lugubris)
Developmental Dynamics
2019
Genome and pan-genome analysis to classify emerging bacteria
Biology Direct
2019
Transcriptomic response of the benthic freshwater diatomNitzschia paleaexposed to Few Layer Graphene
Environmental Science: Nano
2019
De novo transcriptome assembly and analysis of the freshwater araphid diatom Fragilaria radians, Lake Baikal
Scientific Data
2019
Transcriptomic data support a nocturnal bottleneck in the ancestor of gecko lizards
Molecular Phylogenetics and Evolution
2019
Identification of potential chemosignals in the European water vole Arvicola terrestris
Scientific Reports
2019
Detecting, Categorizing, and Correcting Coverage Anomalies of RNA-Seq Quantification
Cell Systems
2019
The Peptide Venom Composition of the Fierce Stinging Ant Tetraponera aethiops (Formicidae: Pseudomyrmecinae)
Toxins
2019
From seascape ecology to population genomics and back. Spatial and ecological differentiation among cryptic species of the red algae Lithophyllum stictiforme/L. cabiochiae, main bioconstructors of coralligenous habitats
Molecular Phylogenetics and Evolution
2019
Comparative Analysis of Strategies for De Novo Transcriptome Assembly in Prokaryotes: Streptomyces clavuligerus as a Case Study
High-Throughput
2019
Transcriptomic Signatures of Experimental Alkaloid Consumption in a Poison Frog
Genes
2019
Environmental transcriptomes of invasive dreissena, a model species in ecotoxicology and invasion biology
Scientific Data
2019
The transcriptome of the veiled chameleon (Chamaeleo calyptratus): A resource for studying the evolution and development of vertebrates
Developmental Dynamics
2019
The Bellerophon pipeline, improving de novo transcriptomes and removing chimeras
Ecology and Evolution
2019
Tissue-Specific Transcriptome Analysis Reveals Candidate Genes for Terpenoid and Phenylpropanoid Metabolism in the Medicinal PlantFerula assafoetida
G3 Genes|Genomes|Genetics
2018
Transcriptome profiling of the honeybee parasite Varroa destructor provides new biological insights into the mite adult life cycle
BMC Genomics
2018
Evaluating the Performance of De Novo Assembly Methods for Venom-Gland Transcriptomics
Toxins
2018
Grouper: graph-based clustering and annotation for improved de novo transcriptome analysis
Bioinformatics
2018
Convergent Acquisition of Nonembryonic Development in Styelid Ascidians
Molecular Biology and Evolution
2018
Studying Smaller and Neglected Organisms in Modern Evolutionary Venomics Implementing RNASeq (Transcriptomics)—A Critical Guide
Toxins
2018
Application of Transcriptomics to Compare the Carbohydrate Active Enzymes That Are Expressed by Diverse Genera of Anaerobic Fungi to Degrade Plant Cell Wall Carbohydrates
Frontiers in Microbiology
2018
Whole-transcriptome response to wastewater treatment plant and stormwater effluents in the Asian clam, Corbicula fluminea
Ecotoxicology and Environmental Safety
2017
De novo transcriptome of the cosmopolitan dinoflagellate Amphidinium carterae to identify enzymes with biotechnological potential
Scientific Reports
2017
K-mer clustering algorithm using a MapReduce framework: application to the parallelization of the Inchworm module of Trinity
BMC Bioinformatics
2017
Root transcriptomic responses of grafted grapevines to heterogeneous nitrogen availability depend on rootstock genotype
Journal of Experimental Botany
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