Citation sources

Updated weekly. Details via Crossref
Crossref Scopus Google Scholar
351 252 Search
2025
Intercellular adhesion molecule-1 protects against adipose tissue inflammation and insulin resistance but promotes liver disease activity in western-diet fed mice
Scientific Reports
2025
Loss of FXR or Bile Acid-dependent Inhibition Accelerate Carcinogenesis of Gastroesophageal Adenocarcinoma
Cellular and Molecular Gastroenterology and Hepatology
2025
Effects of calcium supplementation on the composition and activity of in vitro simulated gut microbiome during inulin fermentation
Food & Function
2025
Altered Microbiome Signature in Cushing's Syndrome Persists Beyond Remission
The Journal of Clinical Endocrinology & Metabolism
2025
Comparison of naturalization mouse model setups uncover distinct effects on intestinal mucosa depending on microbial experience
Discovery Immunology
2025
Insights into the tripartite relationship between cervical cancer, human papillomavirus, and the vaginal microbiome: a mega-analysis
Human Genomics
2025
The microbial metabolite desaminotyrosine protects against graft-versus-host disease via mTORC1 and STING-dependent intestinal regeneration
Nature Communications
2025
Effects of Skim Milk Whey‐Derived Proteins on Plasma, Urine, and Gut Metabolites in Preterm Piglets as a Model for Infants
Molecular Nutrition & Food Research
2025
An unexpected tumor-resistant phenotype from floxing PAK1 in a mouse model of colitis associated cancer
Scientific Reports
2025
Absolute abundance calculation enhances the significance of microbiome data in antibiotic treatment studies
Frontiers in Microbiology
2025
Salix species and varieties affect the molecular composition and diversity of soil organic matter
Plant and Soil
2025
Beyond the plate: A pilot study exploring the microbial landscape of omnivores and vegans through 16S rRNA gene amplicon sequencing and metagenomics
Clinical Nutrition ESPEN
2025
A specific microbial consortium enhances Th1 immunity, improves LCMV viral clearance but aggravates LCMV disease pathology in mice
Nature Communications
2025
Virome specific to tick genus with distinct ecogeographical distribution
Microbiome
2025
ATF6 activation alters colonic lipid metabolism causing tumour-associated microbial adaptation
Nature Metabolism
2025
Proinflammatory and GABA eating bacteria in Parkinson's disease gut microbiome from a meta-analysis perspective
npj Parkinson's Disease
2025
Unravelling novel microbial players in the breast tissue of TNBC patients: a meta-analytic perspective
npj Biofilms and Microbiomes
2025
Endoscopic healing in pediatric IBD perpetuates a persistent signature defined by Th17 cells with molecular and microbial drivers of disease
Cell Reports Medicine
2025
Effect of dietary fiber on trimethylamine-N-oxide production after beef consumption and on gut microbiota: MEATMARK – a randomized cross-over study
European Journal of Clinical Nutrition
2025
Gut microbiota development in very preterm infants following fortification of human milk
mSystems
2025
Baricitinib Augments Lonafarnib Therapy to Preserve Colonic Homeostasis and Microbial Balance in a Mouse Model of Progeria
Aging Cell
2025
Comprehensive analysis of Enterococcus spp. from two European healthy infant cohorts shows stable genomic traits including antimicrobial resistance (AMR)
Gut Microbes
2025
Function-based selection of synthetic communities enables mechanistic microbiome studies
The ISME Journal
2025
The Handbook of the Neurobiology of Eating Disorders
2025
Physicochemical, microbial, and microbiome dynamics in winery waste composting
Environmental Science and Pollution Research
2025
Comparison of Different Sites of Microbiota Shows Increased Pseudomonas Species in the Gut Mucosa in Inflammatory Bowel Disease
Inflammatory Bowel Diseases
2025
The infant microbiota hopscotches between community states toward maturation—longitudinal stool parameters and microbiota development in a cohort of European toddlers
ISME Communications
2025
Fibre supplementation alters the gastrointestinal microbiome, the microbial metabolites and indicators of neurodegeneration in a mouse model of Alzheimer´s disease
Scientific Reports
2024
Fungal endophyte symbionts enhance plant adaptation in Antarctic habitats
Physiologia Plantarum
2024
Targeting the intestinal circadian clock by meal timing ameliorates gastrointestinal inflammation
Cellular & Molecular Immunology
2024
Exploring Gut Microbiome Composition and Circulating Microbial DNA Fragments in Patients with Stage II/III Colorectal Cancer: A Comprehensive Analysis
Cancers
2024
Microbial communities on microplastics from seawater and mussels: Insights from the northern Adriatic Sea
Science of The Total Environment
2024
Using grass inflorescence as source material for biomonitoring through environmental DNA metabarcoding
Molecular Biology Reports
2024
Protocol to study human gut bacterial communities and rhythmicity ex vivo using a chemostat system
STAR Protocols
2024
Assessment of Immobilized Lacticaseibacillus rhamnosus OLXAL-1 Cells on Oat Flakes for Functional Regulation of the Intestinal Microbiome in a Type-1 Diabetic Animal Model
Foods
2024
Australian terrestrial environments harbour extensive RNA virus diversity
Virology
2024
Functional Modulation of Gut Microbiota and Blood Parameters in Diabetic Rats Following Dietary Intervention with Free or Immobilized Pediococcus acidilactici SK Cells on Pistachio Nuts
Nutrients
2024
The effect of in vitro simulated colonic pH gradients on microbial activity and metabolite production using common prebiotics as substrates
BMC Microbiology
2024
Lipocalin-2 expression identifies an intestinal regulatory neutrophil population during acute graft-versus-host disease
Science Translational Medicine
2024
Effects of Sjogren’s syndrome and high sugar diet on oral microbiome in patients with rampant caries: a clinical study
BMC Oral Health
2024
The human intestinal bacterium Eggerthella lenta influences gut metabolomes in gnotobiotic mice
Microbiome Research Reports
2024
Diurnal rhythmicity of infant fecal microbiota and metabolites: A randomized controlled interventional trial with infant formula
Cell Host & Microbe
2024
Characterization of the gastrointestinal microbiome of the Syrian hamster (Mesocricetus auratus) and comparison to data from mice
FEBS Open Bio
2024
At the Shores of a Vanishing Sea: Microbial Communities of Aral and Southern Aral Sea Region
Microbiology
2024
Systematic Evaluation of Clinical, Nutritional, and Fecal Microbial Factors for Their Association With Colorectal Polyps
Clinical and Translational Gastroenterology
2024
The microgeo: an R package rapidly displays the biogeography of soil microbial community traits on maps
FEMS Microbiology Ecology
2024
Structure of Benthic Microbial Communities in the Northeastern Part of the Barents Sea
Microorganisms
2024
Effects of Free or Immobilized Pediococcus acidilactici ORE5 on Corinthian Currants on Gut Microbiome of Streptozotocin-Induced Diabetic Rats
Microorganisms
2024
Exclusive enteral nutrition initiates individual protective microbiome changes to induce remission in pediatric Crohn’s disease
Cell Host & Microbe
2024
Dietary intake of micronized avian eggshell membrane in aged mice reduces circulating inflammatory markers, increases microbiota diversity, and attenuates skeletal muscle aging
Frontiers in Nutrition
2024
At Shores of a Vanishing Sea: Microbial Communities of Aral and Southern Aral Sea Region
Микробиология
2024
Industrial diet intervention modulates the interplay between gut microbiota and host in semi-stray dogs
Animal Microbiome
2024
Short-read full-length 16S rRNA amplicon sequencing for characterisation of the respiratory bacteriome of captive and free-ranging African elephants (Loxodonta africana)
Scientific Reports
2024
Multi-strain probiotics during pregnancy in women with obesity influence infant gut microbiome development: results from a randomized, double-blind placebo-controlled study
Gut Microbes
2024
Oropharyngeal Microbiome Analysis in Patients with Varying SARS-CoV-2 Infection Severity: A Prospective Cohort Study
Journal of Personalized Medicine
2024
Environmental DNA metabarcoding reveals fish diversity, community assembly and one invasive species prevalence in a National Park of Liaohe in September
Frontiers in Marine Science
2024
Mitochondrial perturbation in the intestine causes microbiota-dependent injury and gene signatures discriminative of inflammatory disease
Cell Host & Microbe
2024
Virome diversity shaped by genetic evolution and ecological landscape of Haemaphysalis longicornis
Microbiome
2024
A streamlined culturomics case study for the human gut microbiota research
Scientific Reports
2024
Gut microbiota prevents small intestinal tumor formation due to bile acids in gnotobiotic mice
Microbiome Research Reports
2024
Nfe2l2/NRF2 Deletion Attenuates Tumorigenesis and Increases Bacterial Diversity in a Mouse Model of Lynch Syndrome
Cancer Prevention Research
2024
The diverse liver viromes of Australian geckos and skinks are dominated by hepaciviruses and picornaviruses and reflect host taxonomy and habitat
Virus Evolution
2024
Diet changes due to urbanization in South Africa are linked to microbiome and metabolome signatures of Westernization and colorectal cancer
Nature Communications
2024
Pinewood VOC emissions protect from oxazolone-induced inflammation and dysbiosis in a mouse model of atopic dermatitis
Environment International
2024
DECIPHERING GUT MICROBIOTA IN PATIENTS WITH SEVERE SEPSIS AND SEPTIC SHOCK
Shock
2024
Host species and geography impact bee-associated RNA virus communities with evidence for isolation by distance in viral populations
ISME Communications
2024
Multi-Omics Analysis Unravels the Impact of Stool Sample Logistics on Metabolites and Microbial Composition
Microorganisms
2024
The role of the soil microbiome in the colonisation of glacier forefields by Antarctic pearlwort (Colobanthus quitensis) under current and future climate change scenarios
Soil Biology and Biochemistry
2023
Bovine Udder Health: From Standard Diagnostic Methods to New Approaches—A Practical Investigation of Various Udder Health Parameters in Combination with 16S rRNA Sequencing
Microorganisms
2023
Peripheral blood CD3+HLADR+ cells and associated gut microbiome species predict response and overall survival to immune checkpoint blockade
Frontiers in Immunology
2023
Noninvasive Fecal Cytokine and Microbiota Profiles Predict Commencement of Necrotizing Enterocolitis in a Proof-of-Concept Study
Gastro Hep Advances
2023
Age-related effects on the modulation of gut microbiota by pectins and their derivatives: an in vitro study
Frontiers in Microbiology
2023
Metatranscriptomic Sequencing Reveals Host Species as an Important Factor Shaping the Mosquito Virome
Microbiology Spectrum
2023
Multidimensional landscape of non‐alcoholic fatty liver disease‐related disease spectrum uncovered by big omics data: Profiling evidence and new perspectives
Smart Medicine
2023
Iron or sulfur respiration—an adaptive choice determining the fitness of a natronophilic bacterium Dethiobacter alkaliphilus in geochemically contrasting environments
Frontiers in Microbiology
2023
An Insight into Goat Cheese: The Tales of Artisanal and Industrial Gidotyri Microbiota
Microorganisms
2023
Fäkale Mikrobiotatransplantationen im Zusammenhang mit (kinder- und jugend-)psychiatrischen Erkrankungen
Zeitschrift für Kinder- und Jugendpsychiatrie und Psychotherapie
2023
The microbial composition of larval airways from Drosophila melanogaster differ between specimens from laboratory and natural habitats
Environmental Microbiome
2023
Microbial communities and processes in biofilters for post-treatment of ozonated wastewater treatment plant effluent
Science of The Total Environment
2023
Revealing the Tick Microbiome: Insights into Midgut and Salivary Gland Microbiota of Female Ixodes ricinus Ticks
International Journal of Molecular Sciences
2023
Gut Microbiota and Brain Alterations after Refeeding in a Translational Anorexia Nervosa Rat Model
International Journal of Molecular Sciences
2023
Corinthian Currants Supplementation Restores Serum Polar Phenolic Compounds, Reduces IL-1beta, and Exerts Beneficial Effects on Gut Microbiota in the Streptozotocin-Induced Type-1 Diabetic Rat
Metabolites
2023
Limited cross-species virus transmission in a spatially restricted coral reef fish community
Virus Evolution
2023
Effect of Immobilized Pediococcus acidilactici ORE5 Cells on Pistachio Nuts on the Functional Regulation of the Novel Katiki Domokou-Type Cheese Microbiome
Applied Sciences
2023
Use of an Innovative Silage of Agro-Industrial Waste By-Products in Pig Nutrition: A Pilot Study of Its Effects on the Pig Gastrointestinal Microbiota
Microorganisms
2023
Microbial experience through housing in a farmyard-type environment alters intestinal barrier properties in mouse colons
Scientific Reports
2023
Maternal exposure of mice to glyphosate induces depression- and anxiety-like behavior in the offspring via alterations of the gut-brain axis
Science of The Total Environment
2023
A physiologically based model of bile acid metabolism in mice
iScience
2023
Benchmarking MicrobIEM – a user-friendly tool for decontamination of microbiome sequencing data
BMC Biology
2023
The microbial metabolite desaminotyrosine enhances T-cell priming and cancer immunotherapy with immune checkpoint inhibitors
eBioMedicine
2023
Unraveling fish diversity and assembly patterns in a temperate river: Evidence from environmental DNA metabarcoding and morphological data
Ecological Indicators
2023
Acute cytomegalovirus infection modulates the intestinal microbiota and targets intestinal epithelial cells
European Journal of Immunology
2023
Carbohydrate Sources Influence the Microbiota and Flavour Profile of a Lupine-Based Moromi Fermentation
Foods
2023
Darier’s disease exhibits a unique cutaneous microbial dysbiosis associated with inflammation and body malodour
Microbiome
2023
Physicochemical Changes and Microbiome Associations during Vermicomposting of Winery Waste
Sustainability
2023
Persistent Dysbiosis, Parasite Rise and Growth Impairment in Aquacultured European Seabass after Oxytetracycline Treatment
Microorganisms
2023
The Development of the Bacterial Community of Brown Trout (Salmo trutta) during Ontogeny
Microorganisms
2023
Diet prevents the expansion of segmented filamentous bacteria and ileo-colonic inflammation in a model of Crohn’s disease
Microbiome
2023
Nationwide genomic surveillance reveals the prevalence and evolution of honeybee viruses in China
Microbiome
2023
TNF ΔARE Pigs: A Translational Crohn’s Disease Model
Journal of Crohn's and Colitis
2023
Mucin-microbiome signatures shape the tumor microenvironment in gastric cancer
Microbiome
2023
Soluble, Diferuloylated Corn Bran Glucuronoarabinoxylans Modulate the Human Gut Microbiota In Vitro
Journal of Agricultural and Food Chemistry
2023
Microbiota-dependent influence of prebiotics on the resilience of infant gut microbiota to amoxicillin/clavulanate perturbation in an in vitro colon model
Frontiers in Microbiology
2023
Early life gut microbiota profiles linked to synbiotic formula effects: a randomized clinical trial in European infants
The American Journal of Clinical Nutrition
2022
Atypical enteropathogenic E. coli are associated with disease activity in ulcerative colitis
Gut Microbes
2022
RNA viromes from terrestrial sites across China expand environmental viral diversity
Nature Microbiology
2022
The “Crosstalk” between Microbiota and Metabolomic Profile of Kefalograviera Cheese after the Innovative Feeding Strategy of Dairy Sheep by Omega-3 Fatty Acids
Foods
2022
Effect of Free or Immobilized Lactiplantibacillus plantarum T571 on Feta-Type Cheese Microbiome
Frontiers in Bioscience-Elite
2022
The intestinal clock drives the microbiome to maintain gastrointestinal homeostasis
Nature Communications
2022
Analysis of the Gut Bacterial Community of Wild Larvae of Anastrepha fraterculus sp. 1: Effect of Host Fruit, Environment, and Prominent Stable Associations of the Genera Wolbachia, Tatumella, and Enterobacter
Frontiers in Microbiology
2022
Impaired microbial N‐acyl homoserine lactone signalling increases plant resistance to aphids across variable abiotic and biotic environments
Plant, Cell & Environment
2022
Maternal anthropometric variables and clinical factors shape neonatal microbiome
Scientific Reports
2022
DivCom: A Tool for Systematic Partition of Groups of Microbial Profiles Into Intrinsic Subclusters and Distance-Based Subgroup Comparisons
Frontiers in Bioinformatics
2022
Seed fungal endophytes promote the establishment of invasive Poa annua in maritime Antarctica
Plant Ecology & Diversity
2022
Genetic and environmental circadian disruption induce weight gain through changes in the gut microbiome
Molecular Metabolism
2022
Energetic Return on Investment Determines Overall Soil Microbial Activity
SSRN Electronic Journal
2022
Chronic stress induces colonic tertiary lymphoid organ formation and protection against secondary injury through IL-23/IL-22 signaling
Proceedings of the National Academy of Sciences
2022
Potential energetic return on investment positively correlated with overall soil microbial activity
Soil Biology and Biochemistry
2022
Deploying anIn VitroGut Model to Assay the Impact of the Mannan-Oligosaccharide Prebiotic Bio-Mos on the Atlantic Salmon (Salmo salar) Gut Microbiome
Microbiology Spectrum
2022
Local immune cell contributions to fracture healing in aged individuals – A novel role for interleukin 22
Experimental & Molecular Medicine
2022
Effects of Different Formulations of Glyphosate on Rumen Microbial Metabolism and Bacterial Community Composition in the Rumen Simulation Technique System
Frontiers in Microbiology
2022
Candida tropicalis Infection Modulates the Gut Microbiome and Confers Enhanced Susceptibility to Colitis in Mice
Cellular and Molecular Gastroenterology and Hepatology
2022
Spatiotemporal variation in nitrogen and phosphorus levels and microbial community in the upstream water transport channel to the Douhe Reservoir
Environmental Science and Pollution Research
2022
Long-term daily high-protein, drained yoghurt consumption alters abundance of selected functional groups of the human gut microbiota and fecal short-chain fatty acid profiles in a cohort of overweight and obese women
Journal of Functional Foods
2022
Identification of coronaviruses in farmed wild animals reveals their evolutionary origins in Guangdong, southern China
Virus Evolution
2022
Linking gastrointestinal microbiota and metabolome dynamics to clinical outcomes in paediatric haematopoietic stem cell transplantation
Microbiome
2022
The Role of Intestinal Microbiota in Metastatic Colorectal Cancer Patients Treated With Capecitabine
Clinical Colorectal Cancer
2022
Metatranscriptomics Reveals the Diversity of the Tick Virome in Northwest China
Microbiology Spectrum
2022
The diagnostic value of nasal microbiota and clinical parameters in a multi-parametric prediction model to differentiate bacterial versus viral infections in lower respiratory tract infections
PLOS ONE
2022
NLRP6 Inflammasome Modulates Disease Progression in a Chronic-Plus-Binge Mouse Model of Alcoholic Liver Disease
Cells
2022
CCL17 Promotes Colitis-Associated Tumorigenesis Dependent on the Microbiota
The Journal of Immunology
2022
Absence of Bacteria Permits Fungal Gut-To-Brain Translocation and Invasion in Germfree Mice but Ageing Alone Does Not Drive Pathobiont Expansion in Conventionally Raised Mice
Frontiers in Aging Neuroscience
2022
Namco: a microbiome explorer
Microbial Genomics
2022
Anaerobic single‐cell dispensing facilitates the cultivation of human gut bacteria
Environmental Microbiology
2022
Gut Microbial Disruption in Critically Ill Patients with COVID-19-Associated Pulmonary Aspergillosis
Journal of Fungi
2022
The Cynomolgus Macaque Intestinal Mycobiome Is Dominated by the Kazachstania Genus and K. pintolopesii Species
Journal of Fungi
2022
Comparative metagenomic analysis of human intervertebral disc nucleus pulposus and cartilaginous end plates
Frontiers in Cardiovascular Medicine
2022
Microbial Communities and Processes in Biofilters for Post-Treatment of Ozonated Wastewater Treatment Plant Effluent
SSRN Electronic Journal
2022
Microbial Biomass, Composition, and Functions Are Responsible for the Differential Removal of Trace Organic Chemicals in Biofiltration Systems: A Batch Study
Frontiers in Water
2022
Dietary Modulation of the Human Gut Microbiota and Metabolome with Flaxseed Preparations
International Journal of Molecular Sciences
2022
Changes in the sediment microbial community structure of coastal and inland sinkholes of a karst ecosystem from the Yucatan peninsula
Scientific Reports
2022
A time-series meta-transcriptomic analysis reveals the seasonal, host, and gender structure of mosquito viromes
Virus Evolution
2022
The oral-gut axis: Salivary and fecal microbiome dysbiosis in patients with inflammatory bowel disease
Frontiers in Cellular and Infection Microbiology
2022
Use of the β-Glucan-Producing Lactic Acid Bacteria Strains Levilactobacillus brevis and Pediococcus claussenii for Sourdough Fermentation—Chemical Characterization and Chemopreventive Potential of In Situ-Enriched Wheat and Rye Sourdoughs and Breads
Nutrients
2022
Analysis of Fecal, Salivary, and Tissue Microbiome in Barrett's Esophagus, Dysplasia, and Esophageal Adenocarcinoma
Gastro Hep Advances
2022
Impact of sucroferric oxyhydroxide on the oral and intestinal microbiome in hemodialysis patients
Scientific Reports
2022
Susceptibility to diet-induced obesity at thermoneutral conditions is independent of UCP1
American Journal of Physiology-Endocrinology and Metabolism
2022
Cronos: A Machine Learning Pipeline for Description and Predictive Modeling of Microbial Communities Over Time
Frontiers in Bioinformatics
2022
Glyphosate differentially affects the allergic immune response across generations in mice
Science of The Total Environment
2022
Species-targeted sorting and cultivation of commensal bacteria from the gut microbiome using flow cytometry under anaerobic conditions
Microbiome
2022
Das Darmmikrobiom und seine klinischen Implikationen im Kontext der Anorexia nervosa
Zeitschrift für Kinder- und Jugendpsychiatrie und Psychotherapie
2022
Local-scale virome depiction in Medellín, Colombia, supports significant differences between Aedes aegypti and Aedes albopictus
PLOS ONE
2022
Large-scale sampling of the freshwater microbiome suggests pollution-driven ecosystem changes
Environmental Pollution
2021
Engraftment of strictly anaerobic oxygen-sensitive bacteria in irritable bowel syndrome patients following fecal microbiota transplantation does not improve symptoms
Gut Microbes
2021
Advances in Neurobiology
2021
Gut microbiota and short‐chain fatty acid alterations in cachectic cancer patients
Journal of Cachexia, Sarcopenia and Muscle
2021
Protein Kinase D2 drives chylomicron‐mediated lipid transport in the intestine and promotes obesity
EMBO Molecular Medicine
2021
ddPCR allows 16S rRNA gene amplicon sequencing of very small DNA amounts from low-biomass samples
BMC Microbiology
2021
SP-1, a Serine Protease from the Gut Microbiota, Influences Colitis and Drives Intestinal Dysbiosis in Mice
Cells
2021
Fermentation profile, cholesterol-reducing properties and chemopreventive potential of β-glucans from Levilactobacillus brevis and Pediococcus claussenii – a comparative study with β-glucans from different sources
Food & Function
2021
Impact of dietary sulfolipid-derived sulfoquinovose on gut microbiota composition and inflammatory status of colitis-prone interleukin-10-deficient mice
International Journal of Medical Microbiology
2021
Upregulation of Anti-Oxidative Stress Response Improves Metabolic Changes in L-Selectin-Deficient Mice but Does Not Prevent NAFLD Progression or Fecal Microbiota Shifts
International Journal of Molecular Sciences
2021
Effects of subinhibitory quinolone concentrations on functionality, microbial community composition, and abundance of antibiotic resistant bacteria and qnrS in activated sludge
Journal of Environmental Chemical Engineering
2021
The gut bacterium Extibacter muris produces secondary bile acids and influences liver physiology in gnotobiotic mice
Gut Microbes
2021
Regression Models for Compositional Data: General Log-Contrast Formulations, Proximal Optimization, and Microbiome Data Applications
Statistics in Biosciences
2021
Millet-based supplement restored gut microbial diversity of acute malnourished pigs
PLOS ONE
2021
Genomic insights into diverse bacterial taxa that degrade extracellular DNA in marine sediments
Nature Microbiology
2021
Influence of Cultivation pH on Composition, Diversity, and Metabolic Production in an In Vitro Human Intestinal Microbiota
Fermentation
2021
Early-Life Immune System Maturation in Chickens Using a Synthetic Community of Cultured Gut Bacteria
mSystems
2021
Effect of operational parameters, environmental conditions, and biotic interactions on bacterial communities present in urban wastewater treatment photobioreactors
Chemosphere
2021
Pre-digest of unprotected DNA by Benzonase improves the representation of living skin bacteria and efficiently depletes host DNA
Microbiome
2021
Intestinal mucositis precedes dysbiosis in a mouse model for pelvic irradiation
ISME Communications
2021
Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling
The ISME Journal
2021
Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing
mSphere
2021
microeco: an R package for data mining in microbial community ecology
FEMS Microbiology Ecology
2021
Alteration of Intestinal Microbiome of Clostridioides difficile-Infected Hamsters during the Treatment with Specific Cow Antibodies
Antibiotics
2021
Tick virome diversity in Hubei Province, China, and the influence of host ecology
Virus Evolution
2021
The food additive EDTA aggravates colitis and colon carcinogenesis in mouse models
Scientific Reports
2021
A diet-specific microbiota drives Salmonella Typhimurium to adapt its in vivo response to plant-derived substrates
Animal Microbiome
2021
The yellow perch (Perca flavescens) microbiome revealed resistance to colonisation mostly associated with neutralism driven by rare taxa under cadmium disturbance
Animal Microbiome
2021
Establishment of an In Vitro System of the Human Intestinal Microbiota: Effect of Cultivation Conditions and Influence of Three Donor Stool Samples
Microorganisms
2021
Metagenomic Profiling of Fecal-Derived Bacterial Membrane Vesicles in Crohn’s Disease Patients
Cells
2021
Gentamicin Induced Microbiome Adaptations Associate With Increased BCAA Levels and Enhance Severity of Influenza Infection
Frontiers in Immunology
2021
High throughput in vitro characterization of pectins for pig(let) nutrition
Animal Microbiome
2021
SalmoSim: the development of a three-compartment in vitro simulator of the Atlantic salmon GI tract and associated microbial communities
Microbiome
2021
Supplementation of a lacto-fermented rapeseed-seaweed blend promotes gut microbial- and gut immune-modulation in weaner piglets
Journal of Animal Science and Biotechnology
2021
Amplicon-sequencing of raw milk microbiota: impact of DNA extraction and library-PCR
Applied Microbiology and Biotechnology
2021
Analysis of Ecological Networks in Multicomponent Communities of Microorganisms: Possibilities, Limitations, and Potential Errors
Russian Journal of Ecology
2021
Seasonal dynamics in the number and composition of coliform bacteria in drinking water reservoirs
Science of The Total Environment
2021
High-throughput sequencing provides insights into oral microbiota dysbiosis in association with inflammatory bowel disease
Genomics
2021
Microbiota-based markers predictive of development of Clostridioides difficile infection
Nature Communications
2021
Interdental Plaque Microbial Community Changes under In Vitro Violet LED Irradiation
Antibiotics
2021
Metagenomic sequencing reveals a lack of virus exchange between native and invasive freshwater fish across the Murray–Darling Basin, Australia
Virus Evolution
2021
A Novel PAK1–Notch1 Axis Regulates Crypt Homeostasis in Intestinal Inflammation
Cellular and Molecular Gastroenterology and Hepatology
2021
High-Fructose Diet Alters Intestinal Microbial Profile and Correlates with Early Tumorigenesis in a Mouse Model of Barrett’s Esophagus
Microorganisms
2021
Metagenomic analysis of the salivary microbiota in patients with caries, periodontitis and comorbid diseases
Journal of Dental Sciences
2021
Inter-site and interpersonal diversity of salivary and tongue microbiomes, and the effect of oral care tablets
F1000Research
2021
Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling
ISME Communications
2021
Virome composition in marine fish revealed by meta-transcriptomics
Virus Evolution
2021
Naturalizing laboratory mice by housing in a farmyard-type habitat confers protection against colorectal carcinogenesis
Gut Microbes
2021
Gut microbiota and brain alterations in a translational anorexia nervosa rat model
Journal of Psychiatric Research
2021
Microbiota dynamics and volatile compounds in lupine based Moromi fermented at different salt concentrations
International Journal of Food Microbiology
2021
Parabacteroides distasonis induces depressive-like behavior in a mouse model of Crohn’s disease
Brain, Behavior, and Immunity
2021
Mucosal Biofilms Are an Endoscopic Feature of Irritable Bowel Syndrome and Ulcerative Colitis
Gastroenterology
2021
Longitudinal Microbiome Analysis in a Dextran Sulfate Sodium-Induced Colitis Mouse Model
Microorganisms
2021
Dadaist2: A Toolkit to Automate and Simplify Statistical Analysis and Plotting of Metabarcoding Experiments
International Journal of Molecular Sciences
2021
Influence of a Biotechnologically Produced Oyster Mushroom (Pleurotus sajor-caju) on the Gut Microbiota and Microbial Metabolites in Obese Zucker Rats
Journal of Agricultural and Food Chemistry
2021
Impact of dietary propionate on fructose-induced changes in lipid metabolism, gut microbiota and short-chain fatty acids in mice
International Journal of Food Sciences and Nutrition
2021
Processing Matters in Nutrient-Matched Laboratory Diets for Mice—Microbiome
Animals
2021
A Model System for Feralizing Laboratory Mice in Large Farmyard-Like Pens
Frontiers in Microbiology
2021
Effect of reduction of sodium content on the microbial ecology of Edam cheese samples
AMB Express
2020
Microbial composition of sweetness-enhanced yoghurt during fermentation and storage
AMB Express
2020
Myeloid cells in liver and bone marrow acquire a functionally distinct inflammatory phenotype during obesity-related steatohepatitis
Gut
2020
Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum
Microorganisms
2020
Functional modulation of gut microbiota in diabetic rats following dietary intervention with pistachio nuts (Pistacia vera L.)
Metabolism Open
2020
Long-Term Fluctuation of Oral Biofilm Microbiota following Different Dietary Phases
Applied and Environmental Microbiology
2020
Gastric bypass surgery in a rat model alters the community structure and functional composition of the intestinal microbiota independently of weight loss
Microbiome
2020
Microbial-Mediated Plant Growth Promotion and Pest Suppression Varies Under Climate Change
Frontiers in Plant Science
2020
Dietary cellulose induces anti-inflammatory immunity and transcriptional programs via maturation of the intestinal microbiota
Gut Microbes
2020
Defining Metaniches in the Oral Cavity According to Their Microbial Composition and Cytokine Profile
International Journal of Molecular Sciences
2020
Reducing the Impacts of Biofouling in RO Membrane Systems through In Situ Low Fluence Irradiation Employing UVC-LEDs
Membranes
2020
Effects of Extrinsic Wheat Fiber Supplementation on Fecal Weight; A Randomized Controlled Trial
Nutrients
2020
Skin pH–dependent Staphylococcus aureus abundance as predictor for increasing atopic dermatitis severity
Allergy
2020
Comparing Circadian Rhythmicity in the Human Gut Microbiome
STAR Protocols
2020
The glyphosate formulation Roundup® LB plus influences the global metabolome of pig gut microbiota in vitro
Science of The Total Environment
2020
Partial enteral nutrition has no benefit on bone health but improves growth in paediatric patients with quiescent or mild Crohn's disease
Clinical Nutrition
2020
Metformin elicits antitumour effect by modulation of the gut microbiota and rescues Fusobacterium nucleatum-induced colorectal tumourigenesis
EBioMedicine
2020
Influence of vintage, geographic location and cultivar on the structure of microbial communities associated with the grapevine rhizosphere in vineyards of San Juan Province, Argentina
PLOS ONE
2020
Sustained RNA virome diversity in Antarctic penguins and their ticks
The ISME Journal
2020
Community recovery dynamics in yellow perch microbiome after gradual and constant metallic perturbations
Microbiome
2020
The trisaccharide melezitose impacts honey bees and their intestinal microbiota
PLOS ONE
2020
Inter-site and interpersonal diversity of salivary and tongue microbiomes, and the effect of oral care tablets
F1000Research
2020
A prospective cohort analysis of gut microbial co-metabolism in Alaska Native and rural African people at high and low risk of colorectal cancer
The American Journal of Clinical Nutrition
2020
Bile acids drive the newborn’s gut microbiota maturation
Nature Communications
2020
A First Insight into the Structural and Functional Comparison of Environmental Microbiota in Freshwater Turtle Chinemys reevesii at Different Growth Stages under Pond and Greenhouse Cultivation
Microorganisms
2020
Characterization of sediment microbial communities at two sites with low hydrocarbon pollution in the southeast Gulf of Mexico
PeerJ
2020
Neutral Processes Dominate Microbial Community Assembly in Atlantic Salmon, Salmo salar
Applied and Environmental Microbiology
2020
High microbiota reactivity of adult human intestinal IgA requires somatic mutations
Journal of Experimental Medicine
2020
Disturbed gut microbiota and bile homeostasis in Giardia -infected mice contributes to metabolic dysregulation and growth impairment
Science Translational Medicine
2020
Gut Bacteriome Analysis of Anastrepha fraterculus sp. 1 During the Early Steps of Laboratory Colonization
Frontiers in Microbiology
2020
Complementary Use of Cultivation and High-Throughput Amplicon Sequencing Reveals High Biodiversity Within Raw Milk Microbiota
Frontiers in Microbiology
2020
Carbon and nitrogen cycling in Yedoma permafrost controlled by microbial functional limitations
Nature Geoscience
2020
Effect ofHelicobacter pylorion gastrointestinal microbiota: a population-based study in Linqu, a high-risk area of gastric cancer
Gut
2020
Comprehensive Lifestyle-Modification in Patients with Ulcerative Colitis–A Randomized Controlled Trial
Journal of Clinical Medicine
2020
Integrated microbiota and metabolite profiles link Crohn’s disease to sulfur metabolism
Nature Communications
2020
A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity
Nature Communications
2020
A Novel Primer Mixture for GH48 Genes: Quantification and Identification of Truly Cellulolytic Bacteria in Biogas Fermenters
Microorganisms
2020
Crypt residing bacteria and proximal colonic carcinogenesis in a mouse model of Lynch syndrome
International Journal of Cancer
2020
Arrhythmic Gut Microbiome Signatures Predict Risk of Type 2 Diabetes
Cell Host & Microbe
2020
Influence of probiotic supplementation on the developing microbiota in human preterm neonates
Gut Microbes
2020
Development of the Microbiota and Associations With Birth Mode, Diet, and Atopic Disorders in a Longitudinal Analysis of Stool Samples, Collected From Infancy Through Early Childhood
Gastroenterology
2019
Multidonor FMT capsules improve symptoms and decrease fecal calprotectin in ulcerative colitis patients while treated – an open-label pilot study
Scandinavian Journal of Gastroenterology
2019
Nitric Oxide Donor Modulates a Multispecies Oral Bacterial Community—An In Vitro Study
Microorganisms
2019
Computational profiling of the gut–brain axis: microflora dysbiosis insights to neurological disorders
Briefings in Bioinformatics
2019
Dysbiotische Verschiebungen der mikrobiellen Gemeinschaft des supragingivalen oralen Biofilms durch häufigen Saccharosekonsum
Oralprophylaxe & Kinderzahnheilkunde
2019
Comparison of sampling techniques and different media for the enrichment and isolation of cellulolytic organisms from biogas fermenters
Systematic and Applied Microbiology
2019
A Bioinformatics Guide to Plant Microbiome Analysis
Frontiers in Plant Science
2019
Faecal Microbiota Dynamics and their Relation to Disease Course in Crohn’s Disease
Journal of Crohn's and Colitis
2019
Deep sequencing of biofilm microbiomes on dental composite materials
Journal of Oral Microbiology
2019
Comparative Evaluation of Microbiota Engraftment Following Fecal Microbiota Transfer in Mice Models: Age, Kinetic and Microbial Status Matter
Frontiers in Microbiology
2019
The intestinal microbiota regulates host cholesterol homeostasis
BMC Biology
2019
The Compromised Mucosal Immune System of β7 Integrin-Deficient Mice Has Only Minor Effects on the Fecal Microbiota in Homeostasis
Frontiers in Microbiology
2019
Microbiome data science
Journal of Biosciences
2019
Variable interaction outcomes of local disturbance and El Niño-induced heat stress on coral microbiome alpha and beta diversity
Coral Reefs
2019
Effects of dietary supplementation of the lignocelluloses FibreCell and OptiCell on performance, expression of inflammation-related genes and the gut microbiome of broilers
Poultry Science
2019
The effects of geographic origin and antibiotic treatment on the gut symbiotic communities ofBactrocera oleaepopulations
Entomologia Experimentalis et Applicata
2019
Mouse Vendor Influence on the Bacterial and Viral Gut Composition Exceeds the Effect of Diet
Viruses
2019
Synbiotic-driven improvement of metabolic disturbances is associated with changes in the gut microbiome in diet-induced obese mice
Molecular Metabolism
2019
Effect of the Nursing Mother on the Gut Microbiome of the Offspring During Early Mouse Development
Microbial Ecology
2019
Neutralization of IL-1α ameliorates Crohn’s disease-like ileitis by functional alterations of the gut microbiome
Proceedings of the National Academy of Sciences
2019
Virome heterogeneity and connectivity in waterfowl and shorebird communities
The ISME Journal
2019
Air‐side ammonia stripping coupled to anaerobic digestion indirectly impacts anaerobic microbiome
Microbial Biotechnology
2019
A comprehensive assessment of demographic, environmental, and host genetic associations with gut microbiome diversity in healthy individuals
Microbiome
2019
Microbial Colonization in Adulthood Shapes the Intestinal Macrophage Compartment
Journal of Crohn's and Colitis
2019
Treatment and Prevention of Recurrent Clostridium difficile Infection with Functionalized Bovine Antibody-Enriched Whey in a Hamster Primary Infection Model
Toxins
2019
The Gut Microbiome on a Periodized Low-Protein Diet Is Associated With Improved Metabolic Health
Frontiers in Microbiology
2019
Microbial Networks in SPRING - Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data
Frontiers in Genetics
2018
Neonatal gut and immune maturation is determined more by postnatal age than by postconceptional age in moderately preterm pigs
American Journal of Physiology-Gastrointestinal and Liver Physiology
2018
Dysbiosis and Ecotypes of the Salivary Microbiome Associated With Inflammatory Bowel Diseases and the Assistance in Diagnosis of Diseases Using Oral Bacterial Profiles
Frontiers in Microbiology
2018
The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism
Microbiome
2018
Relations between epidermal barrier dysregulation and Staphylococcus species–dominated microbiome dysbiosis in patients with atopic dermatitis
Journal of Allergy and Clinical Immunology
2018
Dynamics of Bacterial Community Diversity and Structure in the Terminal Reservoir of the South-To-North Water Diversion Project in China
Water
2018
The gut microbiota promotes hepatic fatty acid desaturation and elongation in mice
Nature Communications
2018
Increased Pancreatic Protease Activity in Response to Antibiotics Impairs Gut Barrier and Triggers Colitis
Cellular and Molecular Gastroenterology and Hepatology
2018
Activated ATF6 Induces Intestinal Dysbiosis and Innate Immune Response to Promote Colorectal Tumorigenesis
Gastroenterology
2018
Long-term in situ permafrost thaw effects on bacterial communities and potential aerobic respiration
The ISME Journal
2018
The time response of anaerobic digestion microbiome during an organic loading rate shock
Applied Microbiology and Biotechnology
2018
Different host factors are associated with patterns in bacterial and fungal gut microbiota in Slovenian healthy cohort
PLOS ONE
2018
A Walnut-Enriched Diet Affects Gut Microbiome in Healthy Caucasian Subjects: A Randomized, Controlled Trial
Nutrients
2018
In-vivo shift of the microbiota in oral biofilm in response to frequent sucrose consumption
Scientific Reports
2018
Virus–virus interactions and host ecology are associated with RNA virome structure in wild birds
Molecular Ecology
2018
Short-Term Overfeeding with Dairy Cream Does Not Modify Gut Permeability, the Fecal Microbiota, or Glucose Metabolism in Young Healthy Men
The Journal of Nutrition
2017
Randomized controlled trial on the impact of early-life intervention with bifidobacteria on the healthy infant fecal microbiota and metabolome
The American Journal of Clinical Nutrition
2017
Determinants of postprandial plasma bile acid kinetics in human volunteers
American Journal of Physiology-Gastrointestinal and Liver Physiology
Additional cited-by details will be shown when available from Crossref