Citation sources

Updated weekly. Details via Crossref
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2025
Classical sorting algorithms as a model of morphogenesis: Self-sorting arrays reveal unexpected competencies in a minimal model of basal intelligence
Adaptive Behavior
2025
Harnessing the analog computing power of regulatory networks with the Regulatory Network Machine
iScience
2025
Uncertainty minimization and pattern recognition in Volvox carteri and V. aureus
Journal of The Royal Society Interface
2024
From reinforcement learning to agency: Frameworks for understanding basal cognition
BioSystems
2023
There’s Plenty of Room Right Here: Biological Systems as Evolved, Overloaded, Multi-Scale Machines
Biomimetics
2023
Darwin’s agential materials: evolutionary implications of multiscale competency in developmental biology
Cellular and Molecular Life Sciences
2023
The molecular memory code and synaptic plasticity: A synthesis
Biosystems
2022
Microbial Biocontrol: Food Security and Post Harvest Management
2022
Nonequilibrium dynamics of adaptation in sensory systems
Physical Review E
2022
Microbiome Under Changing Climate
2022
Probabilistic Inference with Polymerizing Biochemical Circuits
Entropy
2022
Learning in Transcriptional Network Models: Computational Discovery of Pathway-Level Memory and Effective Interventions
International Journal of Molecular Sciences
2022
Operant conditioning of stochastic chemical reaction networks
PLOS Computational Biology
2022
Competency in Navigating Arbitrary Spaces as an Invariant for Analyzing Cognition in Diverse Embodiments
Entropy
2021
Life, death, and self: Fundamental questions of primitive cognition viewed through the lens of body plasticity and synthetic organisms
Biochemical and Biophysical Research Communications
2021
A simple regulatory architecture allows learning the statistical structure of a changing environment
eLife
2020
Phytoplankton Temporal Strategies Increase Entropy Production in a Marine Food Web Model
Entropy
2020
Regulation of axial and head patterning during planarian regeneration by a commensal bacterium
Mechanisms of Development
2019
Overcoming randomness does not rule out the importance of inherent randomness for functionality
Journal of Biosciences
2019
The Computational Boundary of a “Self”: Developmental Bioelectricity Drives Multicellularity and Scale-Free Cognition
Frontiers in Psychology
2019
Primed to be strong, primed to be fast: modeling benefits of microbial stress responses
FEMS Microbiology Ecology
2018
Using Maximum Entropy Production to Describe Microbial Biogeochemistry Over Time and Space in a Meromictic Pond
Frontiers in Environmental Science