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2025	Methicillin-Resistant Staphylococcus aureus Bacteremia Relapses Show Diverse Genomic Profiles but Convergence in Bacteremia-Associated Genes The Journal of Infectious Diseases Brooke M Talbot, Natasia F Jacko, Katrina S Hofstetter, Tara Alahakoon, Kevin Bouiller, Timothy D Read, Michael Z David
2023	Where environmental microbiome meets its host: Subway and passenger microbiome relationships Molecular Ecology Mariana Peimbert, Luis D. Alcaraz
2022	Enhancing Meningococcal Genomic Surveillance in the Meningitis Belt Using High-Resolution Culture-Free Whole-Genome Sequencing The Journal of Infectious Diseases Mark Itsko, Nadav Topaz, Sani Ousmane-Traoré, Micheal Popoola, Rasmata Ouedraogo, Kadidja Gamougam, Adodo Yao Sadji, Abass Abdul-Karim, Christine Lascols, Xin Wang
2022	Evaluation of Urethrotropic-Clade Meningococcal Infection by Urine Metagenomic Shotgun Sequencing Journal of Clinical Microbiology Adam C. Retchless, Mark Itsko, Jose A. Bazan, Abigail Norris Turner, Fang Hu, Sandeep J. Joseph, Alexandria Carter, Morgan Brown, Brandon Snyder, Xin Wang
2021	Shotgun-metagenomics based prediction of antibiotic resistance and virulence determinants in Staphylococcus aureus from periprosthetic tissue on blood culture bottles Scientific Reports Adriana Maria Sanabria, Jessin Janice, Erik Hjerde, Gunnar Skov Simonsen, Anne-Merethe Hanssen
2020	Differential evolution in 3′UTRs leads to specific gene expression in Staphylococcus Nucleic Acids Research Pilar Menendez-Gil, Carlos J Caballero, Arancha Catalan-Moreno, Naiara Irurzun, Inigo Barrio-Hernandez, Isabelle Caldelari, Alejandro Toledo-Arana
2018	Development of a New Application for Comprehensive Viability Analysis Based on Microbiome Analysis by Next-Generation Sequencing: Insights into Staphylococcal Carriage in Human Nasal Cavities Applied and Environmental Microbiology Yu Jie Lu, Takashi Sasaki, Kyoko Kuwahara-Arai, Yuki Uehara, Keiichi Hiramatsu
2017	Metagenomics: The Next Culture-Independent Game Changer Frontiers in Microbiology Jessica D. Forbes, Natalie C. Knox, Jennifer Ronholm, Franco Pagotto, Aleisha Reimer
2017	Neisseria genomics: current status and future perspectives Pathogens and Disease Odile B Harrison, Christoph Schoen, Adam C Retchless, Xin Wang, Keith A Jolley, James E Bray, Martin C J Maiden