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Lauren C. Martin, Michaela A. O’Hare, Giovanni Ghielmetti, David Twesigomwe, Tanya J. Kerr, Rachiel Gumbo, Peter E. Buss, Natasha Kitchin, Sian M. J. Hemmings, Michele A. Miller, Wynand J. Goosen

Austin Marshall, Daniel T. Fuller, Paul Dougall, Kavindra Kumaragama, Suresh Dhaniyala, Shantanu Sur

Veronika Mikhaylova, Madison Rzepka, Tetsuya Kawamura, Yu Xia, Peter L. Chang, Shiguo Zhou, Amber Paasch, Long Pham, Naisarg Modi, Likun Yao, Adrian Perez-Agustin, Sara Pagans, T. Christian Boles, Ming Lei, Yong Wang, Ivan Garcia-Bassets, Zhoutao Chen

Yiting Pan, Jin Qian, Xiaowan Ma, Wei Huang, James Kar-Hei Fang, Iqra Arif, Youji Wang, Yueyong Shang, Menghong Hu

Weihong Zhang, Wenjie Wan, Xiaoning Liu, Yuyi Yang, Minxia Liu

Hui Gao, Sai Jiang, Yinan Wang, Meng Hu, Yuyan Xue, Bing Cao, Hailong Dou, Ran Li, Xianfeng Yi, Lina Jiang, Bin Zhang, Yujian Li

Itay Levin, Marek Štrajbl, Yair Fastman, Dror Baran, Shir Twito, Jessica Mioduser, Adi Keren, Sharon Fischman, Michael Zhenin, Guy Nimrod, Natalie Levitin, May Ben Mayor, Meital Gadrich, Yanay Ofran

Kristin Gravdal, Katrine H. Kirste, Krzysztofa Grzelak, Graceline Tina Kirubakaran, Philippe Leissner, Adrien Saliou, Christina Casèn

Heidi El-Gawahergy, Dina H. Amin, Alaa F. Elsayed

Zhijun Zhou, Huimin Huang, Xuting Che

Tal Ratson, Nurit Dagon, Sigalit Blumer, Nir Sterer

Bryden Fields, Emma K. Moffat, Ellie Harrison, Stig U. Andersen, J. Peter W. Young, Ville‐Petri Friman

Kyriaki Katsaounou, Elpiniki Nicolaou, Paris Vogazianos, Cameron Brown, Marios Stavrou, Savvas Teloni, Pantelis Hatzis, Agapios Agapiou, Elisavet Fragkou, Georgios Tsiaoussis, George Potamitis, Apostolos Zaravinos, Chrysafis Andreou, Athos Antoniades, Christos Shiammas, Yiorgos Apidianakis

Weihong Zhang, Wenke Yuan, Lu Chen, Chen Ye, Ying Jiang, Yuyi Yang

O. B. Ogarkov, S. N. Zhdanova, E. A. Orlova, P. A. Khromova, N. L. Belkova, V. V. Sinkov, I. G. Kondratov

Oliyad Jeilu, Amare Gessesse, Addis Simachew, Eva Johansson, Erik Alexandersson

Ke Zhang, Rongnan Lin, Yujun Chang, Qing Zhou, Zhi Zhang

Kgodiso J. Rabapane, Grace N. Ijoma, Tonderayi S. Matambo

Weihong Zhang, Lu Chen, Haiyang Chen, Wenzhi Liu, Yuyi Yang

Benjamin J. Callahan, Dmitry Grinevich, Siddhartha Thakur, Michael A. Balamotis, Tuval Ben Yehezkel

Laura A Finnegan, Fiona Crispie, Marcus J. Claesson, Paul D. Cotter, John G. Kenny

Haiyang Wang, Chongxing Zhang, Peng Cheng, Yang Wang, Hongmei Liu, Haifang Wang, Huaiwei Wang, Maoqing Gong

Sophie Marre, Cyrielle Gasc, Camille Forest, Yacine Lebbaoui, Pascale Mosoni, Pierre Peyret

Søren M. Karst, Ryan M. Ziels, Rasmus H. Kirkegaard, Emil A. Sørensen, Daniel McDonald, Qiyun Zhu, Rob Knight, Mads Albertsen

A. Stebner, A. Ensser, W. Geißdörfer, Y. Bozhkov, R. Lang

Isabel Abellan-Schneyder, Annemarie Siebert, Katharina Hofmann, Mareike Wenning, Klaus Neuhaus

Zi-Wen Yang, Yu Men, Jing Zhang, Zhi-Hui Liu, Jiu-Yang Luo, Yan-Hui Wang, Wen-Jun Li, Qiang Xie

David R. Toole, Jun Zhao, Willm Martens-Habbena, Sarah L. Strauss

Bryden Fields, Sara Moeskjær, Ville‐Petri Friman, Stig U. Andersen, J. Peter W. Young

Leho Tedersoo, Mads Albertsen, Sten Anslan, Benjamin Callahan

Yan Yan, Long H. Nguyen, Eric A. Franzosa, Curtis Huttenhower

Tábata Cristina Guimarães, Thiara Santana Gomes, Clara Dourado Fernandes, Fernanda Dantas Barros, Kamila Valença Oliveira, Muhammad Bilal, Ram Naresh Bharagava, Luiz Fernando Romanholo Ferreira, Luciana M. Hollanda

Deirdre L. Church, Lorenzo Cerutti, Antoine Gürtler, Thomas Griener, Adrian Zelazny, Stefan Emler

Paul Jannis Zurek, Philipp Knyphausen, Katharina Neufeld, Ahir Pushpanath, Florian Hollfelder

Morten Simonsen Dueholm, Kasper Skytte Andersen, Simon Jon McIlroy, Jannie Munk Kristensen, Erika Yashiro, Søren Michael Karst, Mads Albertsen, Per Halkjær Nielsen

Bing Wu, Muzammil Hussain, Weiwei Zhang, Marc Stadler, Xingzhong Liu, Meichun Xiang

Nancy Merino, Shu Zhang, Masaru Tomita, Haruo Suzuki

Benjamin J Callahan, Joan Wong, Cheryl Heiner, Steve Oh, Casey M Theriot, Ajay S Gulati, Sarah K McGill, Michael K Dougherty

Bruce R. McCord, Quentin Gauthier, Sohee Cho, Meghan N. Roig, Georgiana C. Gibson-Daw, Brian Young, Fabiana Taglia, Sara C. Zapico, Roberta Fogliatto Mariot, Steven B. Lee, George Duncan

Ania T. Deutscher, Catherine M. Burke, Aaron E. Darling, Markus Riegler, Olivia L. Reynolds, Toni A. Chapman

S Yitzhaki, L Reshef, U Gophna, M Rosenberg, N Sterer

Szymon T Calus, Umer Z Ijaz, Ameet J Pinto

Gourav Kumar, Gopal Kumar Prajapati, Amar Nath Mishra, Dev Mani Pandey

Andreas Hiergeist, André Gessner

Søren M Karst, Morten S Dueholm, Simon J McIlroy, Rasmus H Kirkegaard, Per H Nielsen, Mads Albertsen

Yanfang Liu, Zheng Lin, Yingying Lin, Yuanmei Chen, Xian-e Peng, Fei He, Shuang Liu, Siyou Yan, Liping Huang, Wanting Lu, Zhisheng Xiang, Zhijian Hu

Richard Allen White, Albert Rivas-Ubach, Mark I. Borkum, Martina Köberl, Aivett Bilbao, Sean M. Colby, David W. Hoyt, Kerem Bingol, Young-Mo Kim, Jason P. Wendler, Kim K. Hixson, Christer Jansson

Martti Vasar, Reidar Andreson, John Davison, Teele Jairus, Mari Moora, Maido Remm, J. P. W. Young, Martin Zobel, Maarja Öpik

Yu Cao, Séamus Fanning, Sinéad Proos, Kieran Jordan, Shabarinath Srikumar

2024	Short-read full-length 16S rRNA amplicon sequencing for characterisation of the respiratory bacteriome of captive and free-ranging African elephants (Loxodonta africana) Scientific Reports Lauren C. Martin, Michaela A. O’Hare, Giovanni Ghielmetti, David Twesigomwe, Tanya J. Kerr, Rachiel Gumbo, Peter E. Buss, Natasha Kitchin, Sian M. J. Hemmings, Michele A. Miller, Wynand J. Goosen
2024	Application of nanopore sequencing for accurate identification of bioaerosol-derived bacterial colonies Environmental Science: Atmospheres Austin Marshall, Daniel T. Fuller, Paul Dougall, Kavindra Kumaragama, Suresh Dhaniyala, Shantanu Sur
2024	Targeted phasing of 2–200 kilobase DNA fragments with a short-read sequencer and a single-tube linked-read library method Scientific Reports Veronika Mikhaylova, Madison Rzepka, Tetsuya Kawamura, Yu Xia, Peter L. Chang, Shiguo Zhou, Amber Paasch, Long Pham, Naisarg Modi, Likun Yao, Adrian Perez-Agustin, Sara Pagans, T. Christian Boles, Ming Lei, Yong Wang, Ivan Garcia-Bassets, Zhoutao Chen
2023	Response of moulting genes and gut microbiome to nano-plastics and copper in juvenile horseshoe crab Tachypleus tridentatus Marine Environmental Research Yiting Pan, Jin Qian, Xiaowan Ma, Wei Huang, James Kar-Hei Fang, Iqra Arif, Youji Wang, Yueyong Shang, Menghong Hu
2023	Stronger Geographic Limitations Shape a Rapid Turnover and Potentially Highly Connected Network of Core Bacteria on Microplastics Microbial Ecology Weihong Zhang, Wenjie Wan, Xiaoning Liu, Yuyi Yang, Minxia Liu
2023	Comparison of gut bacterial communities of Hyphantria cunea Drury (Lepidoptera, Arctiidae), based on 16S rRNA full-length sequencing Biodiversity Data Journal Hui Gao, Sai Jiang, Yinan Wang, Meng Hu, Yuyan Xue, Bing Cao, Hailong Dou, Ran Li, Xianfeng Yi, Lina Jiang, Bin Zhang, Yujian Li
2023	Accurate profiling of full-length Fv in highly homologous antibody libraries using UMI tagged short reads Nucleic Acids Research Itay Levin, Marek Štrajbl, Yair Fastman, Dror Baran, Shir Twito, Jessica Mioduser, Adi Keren, Sharon Fischman, Michael Zhenin, Guy Nimrod, Natalie Levitin, May Ben Mayor, Meital Gadrich, Yanay Ofran
2023	Exploring the gut microbiota in patients with pre-diabetes and treatment naïve diabetes type 2 - a pilot study BMC Endocrine Disorders Kristin Gravdal, Katrine H. Kirste, Krzysztofa Grzelak, Graceline Tina Kirubakaran, Philippe Leissner, Adrien Saliou, Christina Casèn
2022	Natural Products from Actinomycetes Heidi El-Gawahergy, Dina H. Amin, Alaa F. Elsayed
2022	Bacterial Communities in the Feces of Laboratory Reared Gampsocleis gratiosa (Orthoptera: Tettigoniidae) across Different Developmental Stages and Sexes Insects Zhijun Zhou, Huimin Huang, Xuting Che
2022	Microbiota and lung cancer Seminars in Cancer Biology Taichiro Goto
2022	Microbiome Changes in Children Treated under General Anesthesia for Severe Early Childhood Caries: Pilot Study Children Tal Ratson, Nurit Dagon, Sigalit Blumer, Nir Sterer
2022	Genetic variation is associated with differences in facilitative and competitive interactions in the Rhizobium leguminosarum species complex Environmental Microbiology Bryden Fields, Emma K. Moffat, Ellie Harrison, Stig U. Andersen, J. Peter W. Young, Ville‐Petri Friman
2022	Colon Cancer: From Epidemiology to Prevention Metabolites Kyriaki Katsaounou, Elpiniki Nicolaou, Paris Vogazianos, Cameron Brown, Marios Stavrou, Savvas Teloni, Pantelis Hatzis, Agapios Agapiou, Elisavet Fragkou, Georgios Tsiaoussis, George Potamitis, Apostolos Zaravinos, Chrysafis Andreou, Athos Antoniades, Christos Shiammas, Yiorgos Apidianakis
2022	Uniqueness and Dependence of Bacterial Communities on Microplastics: Comparison with Water, Sediment, and Soil Microbial Ecology Weihong Zhang, Wenke Yuan, Lu Chen, Chen Ye, Ying Jiang, Yuyi Yang
2022	16S-ITS-23S rRNA operon segment sequencing provides necessary and sufficient conditions for bacterial species-specific identification Russian Journal of Infection and Immunity O. B. Ogarkov, S. N. Zhdanova, E. A. Orlova, P. A. Khromova, N. L. Belkova, V. V. Sinkov, I. G. Kondratov
2022	Prokaryotic and eukaryotic microbial diversity from three soda lakes in the East African Rift Valley determined by amplicon sequencing Frontiers in Microbiology Oliyad Jeilu, Amare Gessesse, Addis Simachew, Eva Johansson, Erik Alexandersson
2022	16S-FASAS: an integrated pipeline for synthetic full-length 16S rRNA gene sequencing data analysis PeerJ Ke Zhang, Rongnan Lin, Yujun Chang, Qing Zhou, Zhi Zhang
2022	Insufficiency in functional genomics studies, data, and applications: A case study of bio-prospecting research in ruminant microbiome Frontiers in Genetics Kgodiso J. Rabapane, Grace N. Ijoma, Tonderayi S. Matambo
2022	Geographic Dispersal Limitation Dominated Assembly Processes of Bacterial Communities on Microplastics Compared to Water and Sediment Applied and Environmental Microbiology Weihong Zhang, Lu Chen, Haiyang Chen, Wenzhi Liu, Yuyi Yang
2021	Ultra-accurate microbial amplicon sequencing with synthetic long reads Microbiome Benjamin J. Callahan, Dmitry Grinevich, Siddhartha Thakur, Michael A. Balamotis, Tuval Ben Yehezkel
2021	Comprehensive Foodomics Laura A Finnegan, Fiona Crispie, Marcus J. Claesson, Paul D. Cotter, John G. Kenny
2021	Differences in the intestinal microbiota between insecticide‐resistant and ‐sensitive Aedes albopictus based on full‐length 16S rRNA sequencing MicrobiologyOpen Haiyang Wang, Chongxing Zhang, Peng Cheng, Yang Wang, Hongmei Liu, Haifang Wang, Huaiwei Wang, Maoqing Gong
2021	Revealing microbial species diversity using sequence capture by hybridization Microbial Genomics Sophie Marre, Cyrielle Gasc, Camille Forest, Yacine Lebbaoui, Pascale Mosoni, Pierre Peyret
2021	High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing Nature Methods Søren M. Karst, Ryan M. Ziels, Rasmus H. Kirkegaard, Emil A. Sørensen, Daniel McDonald, Qiyun Zhu, Rob Knight, Mads Albertsen
2021	Molecular diagnosis of polymicrobial brain abscesses with 16S-rDNA-based next-generation sequencing Clinical Microbiology and Infection A. Stebner, A. Ensser, W. Geißdörfer, Y. Bozhkov, R. Lang
2021	Full-Length SSU rRNA Gene Sequencing Allows Species-Level Detection of Bacteria, Archaea, and Yeasts Present in Milk Microorganisms Isabel Abellan-Schneyder, Annemarie Siebert, Katharina Hofmann, Mareike Wenning, Klaus Neuhaus
2021	Evaluation of Sample Preservation Approaches for Better Insect Microbiome Research According to Next-Generation and Third-Generation Sequencing Microbial Ecology Zi-Wen Yang, Yu Men, Jing Zhang, Zhi-Hui Liu, Jiu-Yang Luo, Yan-Hui Wang, Wen-Jun Li, Qiang Xie
2021	Bacterial functional prediction tools detect but underestimate metabolic diversity compared to shotgun metagenomics in southwest Florida soils Applied Soil Ecology David R. Toole, Jun Zhao, Willm Martens-Habbena, Sarah L. Strauss
2021	MAUI‐seq: Metabarcoding using amplicons with unique molecular identifiers to improve error correction Molecular Ecology Resources Bryden Fields, Sara Moeskjær, Ville‐Petri Friman, Stig U. Andersen, J. Peter W. Young
2021	Perspectives and Benefits of High-Throughput Long-Read Sequencing in Microbial Ecology Applied and Environmental Microbiology Leho Tedersoo, Mads Albertsen, Sten Anslan, Benjamin Callahan
2020	Strain-level epidemiology of microbial communities and the human microbiome Genome Medicine Yan Yan, Long H. Nguyen, Eric A. Franzosa, Curtis Huttenhower
2020	Microorganisms for Sustainability Tábata Cristina Guimarães, Thiara Santana Gomes, Clara Dourado Fernandes, Fernanda Dantas Barros, Kamila Valença Oliveira, Muhammad Bilal, Ram Naresh Bharagava, Luiz Fernando Romanholo Ferreira, Luciana M. Hollanda
2020	Performance and Application of 16S rRNA Gene Cycle Sequencing for Routine Identification of Bacteria in the Clinical Microbiology Laboratory Clinical Microbiology Reviews Deirdre L. Church, Lorenzo Cerutti, Antoine Gürtler, Thomas Griener, Adrian Zelazny, Stefan Emler
2020	UMI-linked consensus sequencing enables phylogenetic analysis of directed evolution Nature Communications Paul Jannis Zurek, Philipp Knyphausen, Katharina Neufeld, Ahir Pushpanath, Florian Hollfelder
2020	Generation of Comprehensive Ecosystem-Specific Reference Databases with Species-Level Resolution by High-Throughput Full-Length 16S rRNA Gene Sequencing and Automated Taxonomy Assignment (AutoTax) mBio Morten Simonsen Dueholm, Kasper Skytte Andersen, Simon Jon McIlroy, Jannie Munk Kristensen, Erika Yashiro, Søren Michael Karst, Mads Albertsen, Per Halkjær Nielsen
2019	Current insights into fungal species diversity and perspective on naming the environmental DNA sequences of fungi Mycology Bing Wu, Muzammil Hussain, Weiwei Zhang, Marc Stadler, Xingzhong Liu, Meichun Xiang
2019	Comparative genomics of Bacteria commonly identified in the built environment BMC Genomics Nancy Merino, Shu Zhang, Masaru Tomita, Haruo Suzuki
2019	High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution Nucleic Acids Research Benjamin J Callahan, Joan Wong, Cheryl Heiner, Steve Oh, Casey M Theriot, Ajay S Gulati, Sarah K McGill, Michael K Dougherty
2019	Forensic DNA Analysis Analytical Chemistry Bruce R. McCord, Quentin Gauthier, Sohee Cho, Meghan N. Roig, Georgiana C. Gibson-Daw, Brian Young, Fabiana Taglia, Sara C. Zapico, Roberta Fogliatto Mariot, Steven B. Lee, George Duncan
2018	Near full-length 16S rRNA gene next-generation sequencing revealed Asaia as a common midgut bacterium of wild and domesticated Queensland fruit fly larvae Microbiome Ania T. Deutscher, Catherine M. Burke, Aaron E. Darling, Markus Riegler, Olivia L. Reynolds, Toni A. Chapman
2018	Microbiome associated with denture malodour Journal of Breath Research S Yitzhaki, L Reshef, U Gophna, M Rosenberg, N Sterer
2018	NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform GigaScience Szymon T Calus, Umer Z Ijaz, Ameet J Pinto
2018	Eco-friendly Agro-biological Techniques for Enhancing Crop Productivity Gourav Kumar, Gopal Kumar Prajapati, Amar Nath Mishra, Dev Mani Pandey
2018	The Gut Microbiome in Health and Disease Andreas Hiergeist, André Gessner
2018	Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias Nature Biotechnology Søren M Karst, Morten S Dueholm, Simon J McIlroy, Rasmus H Kirkegaard, Per H Nielsen, Mads Albertsen
2018	Streptococcus and Prevotella are associated with the prognosis of oesophageal squamous cell carcinoma Journal of Medical Microbiology Yanfang Liu, Zheng Lin, Yingying Lin, Yuanmei Chen, Xian-e Peng, Fei He, Shuang Liu, Siyou Yan, Liping Huang, Wanting Lu, Zhisheng Xiang, Zhijian Hu
2017	The state of rhizospheric science in the era of multi-omics: A practical guide to omics technologies Rhizosphere Richard Allen White, Albert Rivas-Ubach, Mark I. Borkum, Martina Köberl, Aivett Bilbao, Sean M. Colby, David W. Hoyt, Kerem Bingol, Young-Mo Kim, Jason P. Wendler, Kim K. Hixson, Christer Jansson
2017	Increased sequencing depth does not increase captured diversity of arbuscular mycorrhizal fungi Mycorrhiza Martti Vasar, Reidar Andreson, John Davison, Teele Jairus, Mari Moora, Maido Remm, J. P. W. Young, Martin Zobel, Maarja Öpik
2017	Plant Microbiome Identification and Characterization Current Protocols in Plant Biology Sarah L. Lebeis
2017	A Review on the Applications of Next Generation Sequencing Technologies as Applied to Food-Related Microbiome Studies Frontiers in Microbiology Yu Cao, Séamus Fanning, Sinéad Proos, Kieran Jordan, Shabarinath Srikumar
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