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2024
Metagenomic study of the microbiome and key geochemical potentials associated with architectural heritage sites: a case study of the Song Dynasty city wall in Shou County, China
Frontiers in Microbiology
2024
Metagenomic airborne resistome from urban hot spots through the One Health lens
Environmental Microbiology Reports
2024
A genome-centric view of the role of the Acropora kenti microbiome in coral health and resilience
Nature Communications
2024
Glacier-preserved Tibetan Plateau viral community probably linked to warm–cold climate variations
Nature Geoscience
2023
Back to Basics: A Simplified Improvement to Multiple Displacement Amplification for Microbial Single-Cell Genomics
International Journal of Molecular Sciences
2023
Novel complete methanogenic pathways in longitudinal genomic study of monogastric age-associated archaea
Animal Microbiome
2023
Microbiota and Resistome Analysis of Colostrum and Milk from Dairy Cows Treated with and without Dry Cow Therapies
Antibiotics
2023
Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report
Astrobiology
2023
Strong chemotaxis by marine bacteria towards polysaccharides is enhanced by the abundant organosulfur compound DMSP
Nature Communications
2023
Sequencing-based analysis of the microbiomes of Spanish food processing facilities reveals environment-specific variation in the dominant taxa and antibiotic resistance genes
Food Research International
2022
Toward efficient and high-fidelity metagenomic data from sub-nanogram DNA: evaluation of library preparation and decontamination methods
BMC Biology
2022
Chemotaxis shapes the microscale organization of the ocean’s microbiome
Nature
2022
Comprehensive human amniotic fluid metagenomics supports the sterile womb hypothesis
Scientific Reports
2022
Dual‐layered hydrogels allow complete genome recovery with nucleic acid cytometry
Biotechnology Journal
2022
Introduction to the principles and methods underlying the recovery of metagenome‐assembled genomes from metagenomic data
MicrobiologyOpen
2022
Biodiversity in India: Status, Issues and Challenges
2022
Turnover in Life-Strategies Recapitulates Marine Microbial Succession Colonizing Model Particles
Frontiers in Microbiology
2022
Accurate prediction of metagenome-assembled genome completeness by MAGISTA, a random forest model built on alignment-free intra-bin statistics
Environmental Microbiome
2022
The Chronic Wound Phageome: Phage Diversity and Associations with Wounds and Healing Outcomes
Microbiology Spectrum
2022
Chemotaxis may assist marine heterotrophic bacterial diazotrophs to find microzones suitable for N2 fixation in the pelagic ocean
The ISME Journal
2022
Historical contingencies and phage induction diversify bacterioplankton communities at the microscale
Proceedings of the National Academy of Sciences
2021
Microbial colonization and resistome dynamics in food processing environments of a newly opened pork cutting industry during 1.5 years of activity
Microbiome
2021
CheckV assesses the quality and completeness of metagenome-assembled viral genomes
Nature Biotechnology
2021
Host-associated microbe PCR (hamPCR) enables convenient measurement of both microbial load and community composition
eLife
2021
Space, time and microdiversity: towards a resolution revolution in microbiomics
Environmental Microbiology Reports
2021
Mosaic Ends Tagmentation (METa) Assembly for Highly Efficient Construction of Functional Metagenomic Libraries
mSystems
2021
Metaviromes Reveal the Dynamics of Pseudomonas Host-Specific Phages Cultured and Uncultured by Plaque Assay
Viruses
2021
Glacier ice archives nearly 15,000-year-old microbes and phages
Microbiome
2020
Detection of mixed-strain infections by FACS and ultra-low input genome sequencing
Gut Microbes
2020
A pipeline for targeted metagenomics of environmental bacteria
Microbiome
2020
Morphology of obligate ectosymbionts reveals Paralaxus gen. nov.: A new circumtropical genus of marine stilbonematine nematodes
Zoologica Scripta
2020
STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies
The Lancet Infectious Diseases
2019
Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
PeerJ
2019
Defining the human gut host–phage network through single-cell viral tagging
Nature Microbiology
2019
Evaluation of Sequencing Library Preparation Protocols for Viral Metagenomic Analysis from Pristine Aquifer Groundwaters
Viruses
2019
Optimizing de novo genome assembly from PCR-amplified metagenomes
PeerJ
2019
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads
Genome Biology
2018
Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing
mSystems
2018
Synthetic microbe communities provide internal reference standards for metagenome sequencing and analysis
Nature Communications
2018
Methods in Molecular Biology
2018
GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes
Nucleic Acids Research
2018
Bioreactor virome metagenomics sequencing using DNA spike-ins
PeerJ
2018
The Life Aquatic at the Microscale
mSystems
2018
High-Throughput Miniaturized 16S rRNA Amplicon Library Preparation Reduces Costs while Preserving Microbiome Integrity
mSystems
2018
Methods in Molecular Biology
2018
Enrichment of Clinically Relevant Organisms in Spontaneous Preterm-Delivered Placentas and Reagent Contamination across All Clinical Groups in a Large Pregnancy Cohort in the United Kingdom
Applied and Environmental Microbiology
2017
Microbial ecology of mountain glacier ecosystems: biodiversity, ecological connections and implications of a warming climate
Environmental Microbiology
2017
Microbial Ecology of Extreme Environments
2017
MetaSort untangles metagenome assembly by reducing microbial community complexity
Nature Communications
2017
A microfluidics-based in situ chemotaxis assay to study the behaviour of aquatic microbial communities
Nature Microbiology
2017
Library Construction from Subnanogram DNA for Pelagic Sea Water and Deep-Sea Sediments
Microbes and environments
2017
Zooming in on the phycosphere: the ecological interface for phytoplankton–bacteria relationships
Nature Microbiology
2017
Impact of sample processing on human airways microbial metagenomes
Journal of Biotechnology
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