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2025
Impact of CO2‐Induced Aquatic Acidification on Environmental DNA and RNA Shedding and Persistence
Environmental DNA
2025
Advective Transport Drives Environmental DNA Dispersal in an Estuary
Environmental Science & Technology
2024
rCRUX: A rapid and versatile tool for generating metabarcoding reference libraries in R
Environmental DNA
2024
eDNA metabarcoding warms up a hotspot of marine biodiversity: revealing underrepresented taxa in visual surveys and historical records from the Gulf of California
Marine Biodiversity
2024
Use of Environmental DNA to Evaluate the Spatial Distribution of False Kelpfish (Sebastiscus marmoratus) in Nearshore Areas of Gouqi Island
Fishes
2024
Marine sediment infauna‐based environmental assessment using metabarcoding identifies potential impact indicator species
Environmental DNA
2024
From land to sea: Environmental DNA is correlated with long-term water quality indicators in an urbanized estuary
Marine Pollution Bulletin
2024
The Core of the Matter—Importance of Identification Method and Biological Replication for Benthic Marine Monitoring
Ecology and Evolution
2024
Benchmarking fish biodiversity of seaports with eDNA and nearby marine reserves
Conservation Letters
2024
The Tree of Life eDNA metabarcoding reveals a similar taxonomic richness but dissimilar evolutionary lineages between seaports and marine reserves
Molecular Ecology
2024
Nanopore environmental DNA sequencing of catch water for estimating species composition in demersal bottom trawl fisheries
Environmental DNA
2024
Effect of environmental DNA sampling resolution in detecting nearshore fish biodiversity compared to capture surveys
PeerJ
2024
The Advantages of Combining Morphological and Molecular Methods to Characterise Zooplankton Communities: A Case Study of the UNESCO Biosphere Reserve of the Berlengas Archipelago, Portugal
Oceans
2023
Systematic review of marine environmental DNA metabarcoding studies: toward best practices for data usability and accessibility
PeerJ
2023
Drone-assisted collection of environmental DNA from tree branches for biodiversity monitoring
Science Robotics
2023
Coastal rocky reef fish monitoring in the context of the Marine Strategy Framework Directive: Environmental DNA metabarcoding complements underwater visual census
Ocean & Coastal Management
2023
An AI-based framework for studying visual diversity of urban neighborhoods and its relationship with socio-demographic variables
Journal of Computational Social Science
2023
An environmental DNA metabarcoding approach versus a visual survey for reefs of Koh Pha‐ngan in Thailand
Environmental DNA
2023
A new simulation framework to evaluate the suitability of eDNA for marine and aquatic Environmental Impact Assessments
Environmental DNA
2022
eDNA Metabarcoding Analysis of the Composition and Spatial Patterns of Fish Communities in the Sanbanxi Reservoir, China
Sustainability
2022
How does eDNA decay affect metabarcoding experiments?
Environmental DNA
2022
Water eDNA metabarcoding is effective in detecting non-native species in marinas, but detection errors still hinder its use for passive monitoring
Biofouling
2022
Stream macroinvertebrate reintroductions: A cautionary approach for restored urban streams
Freshwater Science
2022
A manager’s guide to using eDNA metabarcoding in marine ecosystems
PeerJ
2022
How much city is too much city? Biodiversity and ecosystem functioning along an urban gradient at the interface of land and sea
Frontiers in Marine Science
2022
Evaluating eDNA for Use within Marine Environmental Impact Assessments
Journal of Marine Science and Engineering
2022
MIDORI2: A collection of quality controlled, preformatted, and regularly updated reference databases for taxonomic assignment of eukaryotic mitochondrial sequences
Environmental DNA
2021
Estuarine molecular bycatch as a landscape-wide biomonitoring tool
Biological Conservation
2021
High‐throughput sequencing on preservative ethanol is effective at jointly examining infraspecific and taxonomic diversity, although bioinformatics pipelines do not perform equally
Ecology and Evolution
2021
Using environmental DNA methods to improve detectability in an endangered sturgeon (Acipenser sinensis) monitoring program
BMC Ecology and Evolution
2021
Animals, protists and bacteria share marine biogeographic patterns
Nature Ecology & Evolution
2021
eDNA metabarcoding as a biomonitoring tool for marine protected areas
PLOS ONE
2020
Using vertebrate environmental DNA from seawater in biomonitoring of marine habitats
Conservation Biology
2020
eDNA metabarcoding bioassessment of endangered fairy shrimp (Branchinecta spp.)
Conservation Genetics Resources
2020
A Review and Perspective of eDNA Application to Eutrophication and HAB Control in Freshwater and Marine Ecosystems
Microorganisms
2020
Generating and testing ecological hypotheses at the pondscape with environmental DNA metabarcoding: A case study on a threatened amphibian
Environmental DNA
2020
Environmental DNA metabarcoding reveals winners and losers of global change in coastal waters
Proceedings of the Royal Society B: Biological Sciences
2019
A review on the applications and recent advances in environmental DNA (eDNA) metagenomics
Reviews in Environmental Science and Bio/Technology
2019
Understanding PCR Processes to Draw Meaningful Conclusions from Environmental DNA Studies
Scientific Reports
2019
Towards an urban marine ecology: characterizing the drivers, patterns and processes of marine ecosystems in coastal cities
Oikos
2019
Biodiversity assessment of tropical shelf eukaryotic communities via pelagic eDNA metabarcoding
Ecology and Evolution
2019
Local- versus broad-scale environmental drivers of continental β -diversity patterns in subterranean spider communities across Europe
Proceedings of the Royal Society B: Biological Sciences
2018
Anthropogenic disturbance homogenizes seagrass fish communities
Global Change Biology
2018
Evaluation of marine zooplankton community structure through environmental DNA metabarcoding
Limnology and Oceanography: Methods
2018
Effects of sampling effort on biodiversity patterns estimated from environmental DNA metabarcoding surveys
Scientific Reports
2018
Urbanization-related distribution patterns and habitat-use by the marine mesopredator, giant Pacific octopus (Enteroctopus dofleini)
Urban Ecosystems
2018
The effect of tides on nearshore environmental DNA
PeerJ
2018
Concentrations of environmental DNA (eDNA) reflect spawning salmon abundance at fine spatial and temporal scales
Biological Conservation
2018
GoFish: A versatile nested PCR strategy for environmental DNA assays for marine vertebrates
PLOS ONE
2018
Optimising the detection of marine taxonomic richness using environmental DNA metabarcoding: the effects of filter material, pore size and extraction method
Metabarcoding and Metagenomics
2018
Persistence of environmental DNA in marine systems
Communications Biology
2018
Exploring deep-water coral communities using environmental DNA
Deep Sea Research Part II: Topical Studies in Oceanography
2018
Variability in metagenomic samples from the Puget Sound: Relationship to temporal and anthropogenic impacts
PLOS ONE
2018
Predicting Phyllaplysia taylori (Anaspidea: Aplysiidae) presence in Northeastern Pacific estuaries to facilitate grazer community inclusion in eelgrass restoration
Estuarine, Coastal and Shelf Science
2017
Genetic and Manual Survey Methods Yield Different and Complementary Views of an Ecosystem
Frontiers in Marine Science
2017
Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact
Scientific Reports
2017
DNA Sequencing as a Tool to Monitor Marine Ecological Status
Frontiers in Marine Science
2017
Evaluation of Filtration and DNA Extraction Methods for Environmental DNA Biodiversity Assessments across Multiple Trophic Levels
Frontiers in Marine Science
2017
Environmental DNA (eDNA) detects the invasive crayfishes Orconectes rusticus and Pacifastacus leniusculus in large lakes of North America
Hydrobiologia
2017
Effects of shoreline armouring and overwater structures on coastal and estuarine fish: opportunities for habitat improvement
Journal of Applied Ecology
2017
Recommendations for developing and applying genetic tools to assess and manage biological invasions in marine ecosystems
Marine Policy
2017
Spatial distribution of environmental DNA in a nearshore marine habitat
PeerJ
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