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2024	Dynamics simulations of hypoxia inducible factor-1 regulatory network in cancer using formal verification techniques Frontiers in Molecular Biosciences Hafiz Muhammad Faraz Azhar, Muhammad Tariq Saeed, Ishrat Jabeen
2024	Deciphering the Role of Circadian Clock in Inflammatory Response and Immune Disorders Using Model Checking and Petri Nets IEEE Access Hafeez Ur Rahman, Jamil Ahmad, Ainur Akhmediyarova, Dina Oralbekova, Orken Mamyrbayev
2024	An in-silico analysis of OGT gene association with diabetes mellitus BMC Research Notes Abigail O. Ayodele, Brenda Udosen, Olugbenga O. Oluwagbemi, Elijah K. Oladipo, Idowu Omotuyi, Itunuoluwa Isewon, Oyekanmi Nash, Opeyemi Soremekun, Segun Fatumo
2023	Modelling and analysis of the complement system signalling pathways: roles of C3, C5a and pro-inflammatory cytokines in SARS-CoV-2 infection PeerJ Didar Murad, Rehan Zafar Paracha, Muhammad Tariq Saeed, Jamil Ahmad, Ammar Mushtaq, Maleeha Humayun
2022	Decoding the Role of Epigenetics in Breast Cancer Using Formal Modeling and Machine-Learning Methods Frontiers in Molecular Biosciences Ayesha Asim, Yusra Sajid Kiani, Muhammad Tariq Saeed, Ishrat Jabeen
2020	Deciphering the expression dynamics of ANGPTL8 associated regulatory network in insulin resistance using formal modelling approaches IET Systems Biology Amnah Siddiqa, Jamil Ahmad, Amjad Ali, Sharifullah Khan
2020	O-GlcNAc: Regulator of Signaling and Epigenetics Linked to X-linked Intellectual Disability Frontiers in Genetics Daniel Konzman, Lara K. Abramowitz, Agata Steenackers, Mana Mohan Mukherjee, Hyun-Jin Na, John A. Hanover
2019	Incorporating Time Delays in Process Hitting Framework for Dynamical Modeling of Large Biological Regulatory Networks Frontiers in Physiology Iftikhar Ali Sheikh, Jamil Ahmad, Morgan Magnin, Olivier Roux
2019	Wound Healing Activity of Alcoholic Extract of Tamarix Aphylla L. on Animal Models Biomedical and Pharmacology Journal Sajid Ali, Sarfaraz Alam, Sarfaraz Ahmad, Maksood Ali, Waquar Ahsan, Masoom Raza Siddiqui, Salahuddin Ansari, Shamim Shamim, Mohammad Daud Ali
2019	Computational modeling and analysis of the impacts of sleep deprivation on glucose stimulated insulin secretion Biosystems Hufsah Ashraf, Jamil Ahmad, Azka Hassan, Amjad Ali
2018	O-GlcNAc in cancer: An Oncometabolism-fueled vicious cycle Journal of Bioenergetics and Biomembranes John A. Hanover, Weiping Chen, Michelle R. Bond
2018	Lecture Notes in Computer Science Muhammad Tariq Saeed, Jamil Ahmad, Amjad Ali
2018	Model-based in silico analysis of the PI3K/Akt pathway: the elucidation of cross-talk between diabetes and breast cancer PeerJ Sammia Rehman, Ayesha Obaid, Anam Naz, Amjad Ali, Shahzina Kanwal, Jamil Ahmad
2018	Lecture Notes in Computer Science Ayesha Obaid, Anam Naz, Shifa Tariq Ashraf, Faryal Mehwish Awan, Aqsa Ikram, Muhammad Tariq Saeed, Abida Raza, Jamil Ahmad, Amjad Ali
2018	Parameter estimation of qualitative biological regulatory networks on high performance computing hardware BMC Systems Biology Muhammad Tariq Saeed, Jamil Ahmad, Jan Baumbach, Josch Pauling, Aamir Shafi, Rehan Zafar Paracha, Asad Hayat, Amjad Ali
2017	Formal Modeling of mTOR Associated Biological Regulatory Network Reveals Novel Therapeutic Strategy for the Treatment of Cancer Frontiers in Physiology Zurah Bibi, Jamil Ahmad, Amnah Siddiqa, Rehan Z. Paracha, Tariq Saeed, Amjad Ali, Hussnain Ahmed Janjua, Shakir Ullah, Emna Ben Abdallah, Olivier Roux
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