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2025
Enhanced laboratory surveillance study of Campylobacter species in England
Journal of Medical Microbiology
2025
Fritz Kauffmann: innovator in microbial classification
APMIS
2025
Use of Sanger Sequencing in Etiological Diagnostics of Bacterial Complications in Hospital Environment
Antibiot Khimioter = Antibiotics and Chemotherapy
2025
A case of penicillin-resistant group B Streptococcus isolated from a patient in the UK
Journal of Antimicrobial Chemotherapy
2025
FS900350: A Survey of Antimicrobial Resistant E. ​coli and Listeria ​monocytogenes in Raw Salmon Fillets on Retail Sale in the UK
FSA Research and Evidence
2025
Genetic Characterization of Salmonella and Analysis of Ciprofloxacin Resistance Using Sanger Technique in Romania, 2024
Bacteria
2024
Microbiological quality of vegan alternatives to dairy and meat products in England during 2022–3
Journal of Applied Microbiology
2024
An investigation of the presence and antimicrobial susceptibility of Enterobacteriaceae in raw and cooked kibble diets for dogs in the United Kingdom
Frontiers in Microbiology
2024
Clinical and public health implications of increasing notifications of LEE-negative Shiga toxin-producing Escherichia coli in England, 2014–2022
Journal of Medical Microbiology
2024
The integrated genomic surveillance system of Andalusia (SIEGA) provides a One Health regional resource connected with the clinic
Scientific Reports
2024
Pre-packaged cold-chain ready-to-eat food as a source of sporadic listeriosis in Beijing, China
Journal of Infection
2024
Trends in invasive Haemophilus influenzae serotype b (Hib) disease in England: 2012/13 to 2022/23
Journal of Infection
2024
Presence of phage-plasmids in multiple serovars of Salmonella enterica
Microbial Genomics
2024
Genotypic analysis of Shiga toxin-producing Escherichia coli clonal complex 17 in England and Wales, 2014–2022
Journal of Medical Microbiology
2024
Improving nitrofurantoin resistance prediction in Escherichia coli from whole-genome sequence by integrating NfsA/B enzyme assays
Antimicrobial Agents and Chemotherapy
2024
Genomic epidemiology of the clinically dominant clonal complex 1 in the Listeria monocytogenes population in the UK
Microbial Genomics
2023
Phenotypic and genotypic antimicrobial resistance correlation and plasmid characterization in Salmonella spp. isolates from Italy reveal high heterogeneity among serovars
Frontiers in Public Health
2023
The epidemiology of Shiga toxin-producing Escherichia coli O26:H11 (clonal complex 29) in England, 2014–2021
Journal of Infection
2023
Genomic Surveillance of Salmonella from the Comunitat Valenciana (Spain)
Antibiotics
2023
Escherichia coli encoding Shiga toxin subtype Stx2f causing human infections in England, 2015–2022
Journal of Medical Microbiology
2023
Foodborne Outbreak of Extended Spectrum Beta-lactamase Producing Shigella sonnei Associated with Contaminated Spring Onions in the United Kingdom
Journal of Food Protection
2023
Household transmission of non-toxigenic diphtheria toxin gene-bearing Corynebacterium diphtheriae following a cluster of cutaneous cases in a specialist outpatient setting
Journal of Medical Microbiology
2023
Core genome multilocus sequence typing scheme for Bacillus cereus group bacteria
Research in Microbiology
2023
Clinical Features, Immunological Characteristics, and Treatment Outcomes of Campylobacter spp. Infections in Patients With Common Variable Immunodeficiency
The Journal of Allergy and Clinical Immunology: In Practice
2023
Evaluation of Genomic Typing Methods in the Salmonella Reference Laboratory in Public Health, England, 2012–2020
Pathogens
2023
Serratia marcescens Colonization in a Neonatal Intensive Care Unit Has Multiple Sources, with Sink Drains as a Major Reservoir
Applied and Environmental Microbiology
2023
Phylogenetic relationship and virulence composition of Escherichia coli O26:H11 cattle and human strain collections in Scotland; 2002–2020
Frontiers in Microbiology
2023
Prevalence of Shiga Toxin-Producing Escherichia coli O157 in Wild Scottish Deer with High Human Pathogenic Potential
Animals
2022
Characterization of a P1-bacteriophage-like plasmid (phage-plasmid) harbouring bla CTX-M-15 in Salmonella enterica serovar Typhi
Microbial Genomics
2022
Genetic characterization of Salmonella Infantis from South Africa, 2004–2016
Access Microbiology
2022
Whole genome sequencing reveals antimicrobial resistance determinants (AMR genes) of Salmonella enterica recovered from raw chicken and ready-to-eat leaves imported into England between 2014 and 2019
Journal of Applied Microbiology
2022
Phenotypic and molecular characterization of blaCTX-M-3 and blaCTX-M-55-producing monophasic Salmonella enterica serovar Typhimurium in Greece
Journal of Global Antimicrobial Resistance
2022
Shiga toxin-producing Escherichia coli clonal complex 32, including serotype O145:H28, in the UK and Ireland
Journal of Medical Microbiology
2022
Use of Nanopore Sequencing to Characterise the Genomic Architecture of Mobile Genetic Elements Encoding blaCTX-M-15 in Escherichia coli Causing Travellers’ Diarrhoea
Frontiers in Microbiology
2022
Diversity of carbapenemase-producing Enterobacterales in England as revealed by whole-genome sequencing of isolates referred to a national reference laboratory over a 30-month period
Journal of Medical Microbiology
2021
Approaches for characterizing and tracking hospital-associated multidrug-resistant bacteria
Cellular and Molecular Life Sciences
2021
ESBL-producing strains isolated from imported cases of enteric fever in England and Wales reveal multiple chromosomal integrations of blaCTX-M-15 in XDR Salmonella Typhi
Journal of Antimicrobial Chemotherapy
2021
Genomic Epidemiology of Multidrug-Resistant Nontyphoidal Salmonella in Young Children Hospitalized for Gastroenteritis
Microbiology Spectrum
2021
Comparison of Molecular and In Silico Salmonella Serotyping for Salmonella Surveillance
Microorganisms
2021
A High-Throughput Short Sequence Typing Scheme for Serratia marcescens Pure Culture and Environmental DNA
Applied and Environmental Microbiology
2021
Uncovering Infant Group B Streptococcal (GBS) Disease Clusters in the United Kingdom and Ireland Through Genomic Analysis: A Population-based Epidemiological Study
Clinical Infectious Diseases
2021
Genomic Characterization of Antimicrobial Resistance in Food Chain and Livestock-Associated Salmonella Species
Animals
2021
Migration of Escherichia coli and Klebsiella pneumoniae Carbapenemase (KPC)-Producing Enterobacter cloacae through Wastewater Pipework and Establishment in Hospital Sink Waste Traps in a Laboratory Model System
Microorganisms
2021
Bayesian Source Attribution of Salmonella Typhimurium Isolates From Human Patients and Farm Animals in England and Wales
Frontiers in Microbiology
2021
Phylogenomics and antimicrobial resistance of Salmonella Typhi and Paratyphi A, B and C in England, 2016–2019
Microbial Genomics
2021
Phylogenetic context of Shiga toxin-producing Escherichia coli serotype O26:H11 in England
Microbial Genomics
2021
Characterization of a pESI-like plasmid and analysis of multidrug-resistant Salmonella enterica Infantis isolates in England and Wales
Microbial Genomics
2021
An outbreak of human listeriosis associated with frozen sweet corn consumption: Investigations in the UK
International Journal of Food Microbiology
2021
Listeria infection in young infants: results from a national surveillance study in the UK and Ireland
Archives of Disease in Childhood
2020
Typing methods based on whole genome sequencing data
One Health Outlook
2020
Microevolution of Campylobacter jejuni during long-term infection in an immunocompromised host
Scientific Reports
2020
Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of Campylobacter jejuni and Campylobacter coli isolated from cases of diarrhoeal disease in England and Wales, 2015–16
Journal of Antimicrobial Chemotherapy
2020
Genome-based Salmonella serotyping as the new gold standard
Scientific Reports
2020
Genomic surveillance detects Salmonella enterica serovar Paratyphi A harbouring blaCTX-M-15 from a traveller returning from Bangladesh
PLOS ONE
2020
Two cases of imported respiratory diphtheria in Edinburgh, Scotland, October 2019
Epidemiology and Infection
2020
The characterization of mobile colistin resistance (mcr) genes among 33 000 Salmonella enterica genomes from routine public health surveillance in England
Microbial Genomics
2020
Antimicrobial resistance in Shiga toxin-producing Escherichia coli other than serotype O157 : H7 in England, 2014–2016
Journal of Medical Microbiology
2020
Occurrence of Listeria and Escherichia coli in frozen fruit and vegetables collected from retail and catering premises in England 2018–2019
International Journal of Food Microbiology
2020
Genomic Epidemiology of Invasive Methicillin-Resistant Staphylococcus aureus Infections Among Hospitalized Individuals in Ontario, Canada
The Journal of Infectious Diseases
2020
A patient with respiratory toxigenic diphtheria in Greece after more than 30 years
Epidemiology and Infection
2020
Comparative genomic analysis reveals high intra-serovar plasticity within Salmonella Napoli isolated in 2005–2017
BMC Genomics
2020
Performance and Accuracy of Four Open-Source Tools for In Silico Serotyping of Salmonella spp. Based on Whole-Genome Short-Read Sequencing Data
Applied and Environmental Microbiology
2020
Microbial Forensics
2020
Isolation and characterisation of Vibrio cholerae from fish examined postmortem at ZSL London Zoo between 2014 and 2018
Veterinary Record
2020
Listeria monocytogenes in Cooked Chicken: Detection of an Outbreak in the United Kingdom (2016 to 2017) and Analysis of L. monocytogenes from Unrelated Monitoring of Foods (2013 to 2017)
Journal of Food Protection
2020
Campylobacter outbreak associated with raw drinking milk, North West England, 2016
Epidemiology and Infection
2020
Toxigenic Corynebacterium ulcerans associated with upper respiratory infections in cats and dogs
Journal of Small Animal Practice
2019
Genomic approaches used to investigate an atypical outbreak of Salmonella Adjame
Microbial Genomics
2019
Circulation of a community healthcare-associated multiply-resistant meticillin-resistant Staphylococcus aureus lineage in South Yorkshire identified by whole genome sequencing
Journal of Hospital Infection
2019
Emergence of diversity in carbapenemase-producing Escherichia coli ST131, England, January 2014 to June 2016
Eurosurveillance
2019
The Genomics of Streptococcus pneumoniae Carriage Isolates from UK Children and Their Household Contacts, Pre-PCV7 to Post-PCV13
Genes
2019
Whole genome sequencing and metagenomics for outbreak investigation, source attribution and risk assessment of food‐borne microorganisms
EFSA Journal
2019
Tracking Staphylococcus aureus in the intensive care unit using whole-genome sequencing
Journal of Hospital Infection
2019
Genomic sequence investigation Streptococcus pyogenes clusters in England (2010–2015)
Clinical Microbiology and Infection
2019
Utility of Whole Genome Sequencing To Describe the Persistence and Evolution of Listeria monocytogenes Strains within Crabmeat Processing Environments Linked to Two Outbreaks of Listeriosis
Journal of Food Protection
2019
OXA-1 β-lactamase and non-susceptibility to penicillin/β-lactamase inhibitor combinations among ESBL-producingEscherichia coli
Journal of Antimicrobial Chemotherapy
2019
LiSEQ – whole-genome sequencing of a cross-sectional survey of Listeria monocytogenes in ready-to-eat foods and human clinical cases in Europe
Microbial Genomics
2019
Detection and Colonization of Multidrug Resistant Organisms in a Regional Teaching Hospital of Taiwan
International Journal of Environmental Research and Public Health
2019
Genomic and Epidemiological Evidence of a Dominant Panton-Valentine Leucocidin-Positive Methicillin Resistant Staphylococcus aureus Lineage in Sri Lanka and Presence Among Isolates From the United Kingdom and Australia
Frontiers in Cellular and Infection Microbiology
2019
The Transformation of Reference Microbiology Methods and Surveillance for Salmonella With the Use of Whole Genome Sequencing in England and Wales
Frontiers in Public Health
2019
Evolution of Streptococcus pneumoniae Serotype 3 in England and Wales: A Major Vaccine Evader
Genes
2019
Identification and typing of Yersinia enterocolitica and Yersinia pseudotuberculosis isolated from human clinical specimens in England between 2004 and 2018
Journal of Medical Microbiology
2019
BacTag - a pipeline for fast and accurate gene and allele typing in bacterial sequencing data based on database preprocessing
BMC Genomics
2019
Emergence of phylogenetically diverse and fluoroquinolone resistant Salmonella Enteritidis as a cause of invasive nontyphoidal Salmonella disease in Ghana
PLOS Neglected Tropical Diseases
2019
Microbial Diversity in Ecosystem Sustainability and Biotechnological Applications
2019
Comparison of single-nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga toxin–producing Escherichia coli
GigaScience
2018
Validation of Whole-Genome Sequencing for Identification and Characterization of Shiga Toxin-Producing Escherichia coli To Produce Standardized Data To Enable Data Sharing
Journal of Clinical Microbiology
2018
Final report of ENGAGE ‐ Establishing Next Generation sequencing Ability for Genomic analysis in Europe
EFSA Supporting Publications
2018
Phylogenetic comparison of enteroinvasive Escherichia coli isolated from cases of diarrhoeal disease in England, 2005–2016
Journal of Medical Microbiology
2018
Evaluation of Whole-Genome Sequencing for Identification and Typing of Vibrio cholerae
Journal of Clinical Microbiology
2018
Testing culture purity in prokaryotes: criteria and challenges
Antonie van Leeuwenhoek
2018
Role of wild birds and environmental contamination in the epidemiology of Salmonella infection in an outdoor pig farm
Veterinary Microbiology
2018
Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of Salmonella enterica serovars Typhi and Paratyphi
Journal of Antimicrobial Chemotherapy
2018
MentaLiST – A fast MLST caller for large MLST schemes
Microbial Genomics
2018
Rapid Spread of Pneumococcal Nonvaccine Serotype 7C Previously Associated with Vaccine Serotype 19F, England and Wales
Emerging Infectious Diseases
2018
Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications
Wellcome Open Research
2018
National outbreak ofSalmonellaGive linked to a local food manufacturer in Malta, October 2016
Epidemiology and Infection
2018
Discovery and description of a new serogroup 7 Streptococcus pneumoniae serotype, 7D, and structural analysis of 7C and 7D
Carbohydrate Research
2018
First use of whole-genome sequencing to investigate a cluster of Yersinia enterocolitica, Liverpool, United Kingdom, 2017
Journal of Medical Microbiology
2018
Salmonella Enteritidis ST183: emerging and endemic biotypes affecting western European hedgehogs (Erinaceus europaeus) and people in Great Britain
Scientific Reports
2017
Comparison of classical multi-locus sequence typing software for next-generation sequencing data
Microbial Genomics
2017
Tracking of Listeria monocytogenes in meat establishment using Whole Genome Sequencing as a food safety management tool: A proof of concept
International Journal of Food Microbiology
2017
Clinical streptococcal isolates, distinct fromStreptococcus pneumoniae,but containing the β-glucosyltransferasettsgene and expressing serotype 37 capsular polysaccharide
PeerJ
2017
Pneumococcal 23B Molecular Subtype Identified Using Whole Genome Sequencing
Genome Biology and Evolution
2017
Identification of Escherichia coli and Shigella Species from Whole-Genome Sequences
Journal of Clinical Microbiology
2017
Serious pneumococcal disease outbreak in men exposed to metal fume – detection, response and future prevention through pneumococcal vaccination
Vaccine
2017
Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of enteroaggregative Escherichia coli isolated from cases of diarrhoeal disease in England, 2015–16
Journal of Antimicrobial Chemotherapy
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