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2023	The Frequencies of Amino Acids in Secondary Structural Elements of Globular Proteins Clinical and Experimental Health Sciences Cevdet NACAR
2020	Site-Specific Amino Acid Distributions Follow a Universal Shape Journal of Molecular Evolution Mackenzie M. Johnson, Claus O. Wilke
2019	A structural homology approach for computational protein design with flexible backbone Bioinformatics David Simoncini, Kam Y J Zhang, Thomas Schiex, Sophie Barbe
2018	Methods in Molecular Biology Daisuke Kuroda, Kouhei Tsumoto
2017	Biophysical Models of Protein Evolution: Understanding the Patterns of Evolutionary Sequence Divergence Annual Review of Biophysics Julian Echave, Claus O. Wilke
2017	Methods in Molecular Biology Noah Ollikainen
2016	Dissecting the roles of local packing density and longer‐range effects in protein sequence evolution Proteins: Structure, Function, and Bioinformatics Amir Shahmoradi, Claus O. Wilke
2016	Intermediate divergence levels maximize the strength of structure–sequence correlations in enzymes and viral proteins Protein Science Eleisha L. Jackson, Amir Shahmoradi, Stephanie J. Spielman, Benjamin R. Jack, Claus O. Wilke
2016	Computational protein design for given backbone: recent progresses in general method-related aspects Current Opinion in Structural Biology Haiyan Liu, Quan Chen
2016	Fast search algorithms for computational protein design Journal of Computational Chemistry Seydou Traoré, Kyle E. Roberts, David Allouche, Bruce R. Donald, Isabelle André, Thomas Schiex, Sophie Barbe
2016	Causes of evolutionary rate variation among protein sites Nature Reviews Genetics Julian Echave, Stephanie J. Spielman, Claus O. Wilke
2015	Guaranteed Discrete Energy Optimization on Large Protein Design Problems Journal of Chemical Theory and Computation David Simoncini, David Allouche, Simon de Givry, Céline Delmas, Sophie Barbe, Thomas Schiex
2014	Predicting Evolutionary Site Variability from Structure in Viral Proteins: Buriedness, Packing, Flexibility, and Design Journal of Molecular Evolution Amir Shahmoradi, Dariya K. Sydykova, Stephanie J. Spielman, Eleisha L. Jackson, Eric T. Dawson, Austin G. Meyer, Claus O. Wilke
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