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2024
Biocatalysis in Asymmetric Synthesis
2024
The influence of model building schemes and molecular dynamics sampling on QM-cluster models: the chorismate mutase case study
Physical Chemistry Chemical Physics
2023
Benchmark of general-purpose machine learning-based quantum mechanical method AIQM1 on reaction barrier heights
The Journal of Chemical Physics
2023
Benchmarking Density Functional Theory Methods for Metalloenzyme Reactions: The Introduction of the MME55 Set
Journal of Chemical Theory and Computation
2023
Barrier Height Prediction by Machine Learning Correction of Semiempirical Calculations
The Journal of Physical Chemistry A
2023
Machine learning estimation of reaction energy barriers
Computational and Theoretical Chemistry
2023
How to Compute Atomistic Insight in DFT Clusters: The REG-IQA Approach
Journal of Chemical Information and Modeling
2022
Binding Energy Partition of Promising IRAK‐4 Inhibitor (Zimlovisertib) for the Treatment of COVID‐19 Pneumonia
ChemPhysChem
2022
BH9, a New Comprehensive Benchmark Data Set for Barrier Heights and Reaction Energies: Assessment of Density Functional Approximations and Basis Set Incompleteness Potentials
Journal of Chemical Theory and Computation
2022
Mechanistic Modeling of Monoglyceride Lipase Covalent Modification Elucidates the Role of Leaving Group Expulsion and Discriminates Inhibitors with High and Low Potency
Journal of Chemical Information and Modeling
2021
A guide to benchmarking enzymatically catalysed reactions: the importance of accurate reference energies and the chemical environment
Theoretical Chemistry Accounts
2020
Affinity and Selectivity Assessment of Covalent Inhibitors by Free Energy Calculations
Journal of Chemical Information and Modeling
2020
DFT‐D4 counterparts of leading meta‐generalized‐gradient approximation and hybrid density functionals for energetics and geometries
Journal of Computational Chemistry
2020
Methods in Molecular Biology
2020
Benchmarking quantum mechanical methods for calculating reaction energies of reactions catalyzed by enzymes
PeerJ Physical Chemistry
2019
The maximum occupancy condition for the localized property-optimized orbitals
Physical Chemistry Chemical Physics
2019
Toward a Quantum-Chemical Benchmark Set for Enzymatically Catalyzed Reactions: Important Steps and Insights
The Journal of Physical Chemistry A
2019
Quantum Mechanical Description of Electrostatics Provides a Unified Picture of Catalytic Action Across Methyltransferases
The Journal of Physical Chemistry Letters
2017
An investigation into the applicability of the semiempirical method PM7 for modeling the catalytic mechanism in the enzyme chymotrypsin
Journal of Molecular Modeling
2017
Intermolecular interactions in the condensed phase: Evaluation of semi-empirical quantum mechanical methods
The Journal of Chemical Physics
2017
Prediction of pKa Values for Druglike Molecules Using Semiempirical Quantum Chemical Methods
The Journal of Physical Chemistry A
2017
Benchmarking density functional tight binding models for barrier heights and reaction energetics of organic molecules
Journal of Computational Chemistry
2017
Recent Trends in Quantum Chemical Modeling of Enzymatic Reactions
Journal of the American Chemical Society