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2024	Step-by-Step Metagenomics for Food Microbiome Analysis: A Detailed Review Foods Jan Sadurski, Magdalena Polak-Berecka, Adam Staniszewski, Adam Waśko
2022	Music of metagenomics—a review of its applications, analysis pipeline, and associated tools Functional & Integrative Genomics Bilal Wajid, Faria Anwar, Imran Wajid, Haseeb Nisar, Sharoze Meraj, Ali Zafar, Mustafa Kamal Al-Shawaqfeh, Ali Riza Ekti, Asia Khatoon, Jan S. Suchodolski
2021	ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data BMC Bioinformatics Zachary Deng, Eric Delwart
2021	Genome-resolved metagenomics using environmental and clinical samples Briefings in Bioinformatics Masood ur Rehman Kayani, Wanqiu Huang, Ru Feng, Lei Chen
2020	Algorithmic and computational comparison of metagenome assemblers The Indian Journal of Agricultural Sciences ANU SHARMA, DWIJESH CHANDRA MISHRA, NEERAJ BUDHLAKOTI, ANIL RAI, SHASHI BHUSHAN LAL, SANJEEV KUMAR
2020	An Integrated Multi-Disciplinary Perspective for Addressing Challenges of the Human Gut Microbiome Metabolites Rohan M. Shah, Elizabeth J. McKenzie, Magda T. Rosin, Snehal R. Jadhav, Shakuntla V. Gondalia, Douglas Rosendale, David J. Beale
2020	New approaches for metagenome assembly with short reads Briefings in Bioinformatics Martin Ayling, Matthew D Clark, Richard M Leggett
2016	Next-Generation Sequencing Data Analysis
2015	Metagenomic Analysis of Upwelling-Affected Brazilian Coastal Seawater Reveals Sequence Domains of Type I PKS and Modular NRPS International Journal of Molecular Sciences Rafael Cuadrat, Juliano Cury, Alberto Dávila
2015	Rumen Microbiology: From Evolution to Revolution Robert W. Li
2015	Introduction to the analysis of next generation sequencing data and its application to venous thromboembolism Thrombosis and Haemostasis Marisa L. R. Cunha, Joost C. M. Meijers, Saskia Middeldorp
2015	InteMAP: Integrated metagenomic assembly pipeline for NGS short reads BMC Bioinformatics Binbin Lai, Fumeng Wang, Xiaoqi Wang, Liping Duan, Huaiqiu Zhu
2015	MetaVelvet-SL: an extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning DNA Research Afiahayati, K. Sato, Y. Sakakibara
2014	Automated ensemble assembly and validation of microbial genomes BMC Bioinformatics Sergey Koren, Todd J Treangen, Christopher M Hill, Mihai Pop, Adam M Phillippy
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