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Joseph Thorpe, Waritta Sawaengdee, Daniel Ward, Monica Campos, Nuanjun Wichukchinda, Boonchai Chaiyasirinroje, Aungkana Thanraka, Jaluporn Chumpol, Jody E. Phelan, Susana Campino, Surakameth Mahasirimongkol, Taane G. Clark

Basha Chekesa, Harinder Singh, Norberto Gonzalez-Juarbe, Sanjay Vashee, Rosana Wiscovitch-Russo, Christopher L. Dupont, Musse Girma, Oudessa Kerro, Balako Gumi, Gobena Ameni

Olabisi Flora Davies-Bolorunduro, Bharkbhoom Jaemsai, Wuthiwat Ruangchai, Thanakron Noppanamas, Manon Boonbangyang, Thavin Bodharamik, Waritta Sawaengdee, Surakameth Mahasirimongkol, Prasit Palittapongarnpim

Andrea Monserrat Negrete-Paz, Gerardo Vázquez-Marrufo, Ana Gutiérrez-Moraga, Ma. Soledad Vázquez-Garcidueñas

Christophe Guyeux, Gaetan Senelle, Guislaine Refrégier, Florence Bretelle-Establet, Emmanuelle Cambau, Christophe Sola

Andrea Monserrat Negrete-Paz, Gerardo Vázquez-Marrufo, Ma. Soledad Vázquez-Garcidueñas

Danai Papakonstantinou, Steven J. Dunn, Simon J. Draper, Adam F. Cunningham, Matthew K. O’Shea, Alan McNally

Willy Ssengooba, Jerome H. Chin

Dai Yoshimura, Rei Kajitani, Yasuhiro Gotoh, Katsuyuki Katahira, Miki Okuno, Yoshitoshi Ogura, Tetsuya Hayashi, Takehiko Itoh

Jody E. Phelan, Dodge R. Lim, Satoshi Mitarai, Paola Florez de Sessions, Ma. Angelica A. Tujan, Lorenzo T. Reyes, Inez Andrea P. Medado, Alma G. Palparan, Ahmad Nazri Mohamed Naim, Song Jie, Edelwisa Segubre-Mercado, Beatriz Simoes, Susana Campino, Julius C. Hafalla, Yoshiro Murase, Yuta Morishige, Martin L. Hibberd, Seiya Kato, Ma. Cecilia G. Ama, Taane G. Clark

Minako Hijikata, Naoto Keicho, Le Van Duc, Shinji Maeda, Nguyen Thi Le Hang, Ikumi Matsushita, Seiya Kato

2024	Multi-platform whole genome sequencing for tuberculosis clinical and surveillance applications Scientific Reports Joseph Thorpe, Waritta Sawaengdee, Daniel Ward, Monica Campos, Nuanjun Wichukchinda, Boonchai Chaiyasirinroje, Aungkana Thanraka, Jaluporn Chumpol, Jody E. Phelan, Susana Campino, Surakameth Mahasirimongkol, Taane G. Clark
2024	Pangenome and genomic signatures linked to the dominance of the lineage-4 of Mycobacterium tuberculosis isolated from extrapulmonary tuberculosis patients in western Ethiopia PLOS ONE Basha Chekesa, Harinder Singh, Norberto Gonzalez-Juarbe, Sanjay Vashee, Rosana Wiscovitch-Russo, Christopher L. Dupont, Musse Girma, Oudessa Kerro, Balako Gumi, Gobena Ameni
2024	Analysis of complete genomes of Mycobacterium tuberculosis sublineage 2.1 (Proto-Beijing) revealed the presence of three pe_pgrs3-pe_pgrs4-like genes Scientific Reports Olabisi Flora Davies-Bolorunduro, Bharkbhoom Jaemsai, Wuthiwat Ruangchai, Thanakron Noppanamas, Manon Boonbangyang, Thavin Bodharamik, Waritta Sawaengdee, Surakameth Mahasirimongkol, Prasit Palittapongarnpim
2023	Pangenome Reconstruction of Mycobacterium tuberculosis as a Guide to Reveal Genomic Features Associated with Strain Clinical Phenotype Microorganisms Andrea Monserrat Negrete-Paz, Gerardo Vázquez-Marrufo, Ana Gutiérrez-Moraga, Ma. Soledad Vázquez-Garcidueñas
2022	Connection between two historical tuberculosis outbreak sites in Japan, Honshu, by a new ancestral Mycobacterium tuberculosis L2 sublineage Epidemiology and Infection Christophe Guyeux, Gaetan Senelle, Guislaine Refrégier, Florence Bretelle-Establet, Emmanuelle Cambau, Christophe Sola
2021	Whole-genome comparative analysis at the lineage/sublineage level discloses relationships between Mycobacterium tuberculosis genotype and clinical phenotype PeerJ Andrea Monserrat Negrete-Paz, Gerardo Vázquez-Marrufo, Ma. Soledad Vázquez-Garcidueñas
2021	Mapping Gene-by-Gene Single-Nucleotide Variation in 8,535 Mycobacterium tuberculosis Genomes: a Resource To Support Potential Vaccine and Drug Development mSphere Danai Papakonstantinou, Steven J. Dunn, Simon J. Draper, Adam F. Cunningham, Matthew K. O’Shea, Alan McNally
2020	Tuberculous Meningitis Willy Ssengooba, Jerome H. Chin
2019	Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP Microbial Genomics Dai Yoshimura, Rei Kajitani, Yasuhiro Gotoh, Katsuyuki Katahira, Miki Okuno, Yoshitoshi Ogura, Tetsuya Hayashi, Takehiko Itoh
2019	Microbiological diagnosis of tuberculous meningitis Indian Journal of Medical Research Ravindra Kumar Garg
2019	Mycobacterium tuberculosis whole genome sequencing provides insights into the Manila strain and drug-resistance mutations in the Philippines Scientific Reports Jody E. Phelan, Dodge R. Lim, Satoshi Mitarai, Paola Florez de Sessions, Ma. Angelica A. Tujan, Lorenzo T. Reyes, Inez Andrea P. Medado, Alma G. Palparan, Ahmad Nazri Mohamed Naim, Song Jie, Edelwisa Segubre-Mercado, Beatriz Simoes, Susana Campino, Julius C. Hafalla, Yoshiro Murase, Yuta Morishige, Martin L. Hibberd, Seiya Kato, Ma. Cecilia G. Ama, Taane G. Clark
2017	Spoligotyping and whole-genome sequencing analysis of lineage 1 strains of Mycobacterium tuberculosis in Da Nang, Vietnam PLOS ONE Minako Hijikata, Naoto Keicho, Le Van Duc, Shinji Maeda, Nguyen Thi Le Hang, Ikumi Matsushita, Seiya Kato
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