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2025
Salmonella serotypes in the genomic era: simplified Salmonella serotype interpretation from DNA sequence data
Applied and Environmental Microbiology
2025
AmpliconTyper – a tool for analysing ONT multiplex PCR data from environmental and other complex samples
Microbial Genomics
2025
Molecular epidemiology of Salmonella Enteritidis in humans and animals in Spain
Antimicrobial Agents and Chemotherapy
2025
Novel strategies to combat the antimicrobial resistance against Salmonella Typhi
Journal of Drug Delivery Science and Technology
2025
Key role of whole genome sequencing in resolving an international outbreak of monophasic Salmonella Typhimurium linked to chocolate products
BMC Infectious Diseases
2025
Whole‐Genome Single Nucleotide Polymorphism Analysis and High‐Resolution Melting (HRM) Differentiation of Edwardsiella anguillarum and Edwardsiella piscicida
Journal of Fish Diseases
2025
Potential links between human bloodstream infection by Salmonella enterica serovar Typhimurium and international transmission to Colombia
PLOS Neglected Tropical Diseases
2025
Prevalence and transmission of Salmonella collected from farming to egg processing of layer production chain in Jiangsu Province, China
Poultry Science
2025
Reference Module in Life Sciences
2025
Exploring SNP filtering strategies: the influence of strict vs soft core
Microbial Genomics
2025
Risk Factors and Prevalence of Salmonella spp. in Poultry Carcasses in Slaughterhouses Under Official Veterinary Inspection Service in Brazil
Animals
2025
The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health
Genome Medicine
2024
Methods in Molecular Biology
2024
The re-emergence of sexually transmissible multidrug resistant Shigella flexneri 3a, England, United Kingdom
npj Antimicrobials and Resistance
2024
Antimicrobial resistance and genome characteristics of Salmonella enteritidis from Huzhou, China
PLOS ONE
2024
Virulence and antimicrobial resistance genes occurring in Salmonella spp. isolated from aquatic food
Journal of Consumer Protection and Food Safety
2024
The First-Ever Encounter with Salmonella enterica Serovar Hvittingfoss Causing Acute Gastroenteritis in India: A Case Report
Infectious Disease Reports
2024
Contamination Survey of Insect Genomic and Transcriptomic Data
Animals
2024
Genetic Diversity of Salmonella enterica subsp. enterica Serovar Enteritidis from Human and Non-Human Sources in Portugal
Pathogens
2024
An investigation of the presence and antimicrobial susceptibility of Enterobacteriaceae in raw and cooked kibble diets for dogs in the United Kingdom
Frontiers in Microbiology
2024
Antimicrobial Resistance: Factors to Findings
2024
Genetically identified Salmonella typhimurium outbreak linked to a rural Butcher’s Shop, February–March 2018, North East England
Epidemiology and Infection
2024
Molecular Medical Microbiology
2024
Comparative genomics analysis of Salmonella Enteritidis isolated from clinical cases associated with chicken
BMC Microbiology
2023
The phylogenomic landscape of extended-spectrum β-lactamase producing Citrobacter species isolated from surface water
BMC Genomics
2023
Evaluation of multiplex nanopore sequencing for Salmonella serotype prediction and antimicrobial resistance gene and virulence gene detection
Frontiers in Microbiology
2023
Present Knowledge in Food Safety
2023
Rapid geographical source attribution of Salmonella enterica serovar Enteritidis genomes using hierarchical machine learning
eLife
2023
Genomic Surveillance and Pandemic Preparedness
2023
Molecular detection and characterization of foodborne bacteria: Recent progresses and remaining challenges
Comprehensive Reviews in Food Science and Food Safety
2023
Food for Thought: Proteomics for Meat Safety
Life
2023
Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications
Microbial Genomics
2023
Microbiological Identification using MALDI‐TOF and Tandem Mass Spectrometry
2023
Artificial Intelligence for Antimicrobial Resistance Prediction: Challenges and Opportunities towards Practical Implementation
Antibiotics
2023
A hybridization target enrichment approach for pathogen genomics
mBio
2023
Using SNP addresses for Salmonella Typhimurium DT104 in routine veterinary outbreak detection
Epidemiology and Infection
2023
Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes
eLife
2023
Whole-genome sequencing of multidrug resistance Salmonella Typhi clinical strains isolated from Balochistan, Pakistan
Frontiers in Public Health
2023
Genomic characterization of Salmonella isolated from retail chicken and humans with diarrhea in Qingdao, China
Frontiers in Microbiology
2023
Evaluation of Genomic Typing Methods in the Salmonella Reference Laboratory in Public Health, England, 2012–2020
Pathogens
2023
Foodborne Outbreak of Extended Spectrum Beta-lactamase Producing Shigella sonnei Associated with Contaminated Spring Onions in the United Kingdom
Journal of Food Protection
2023
Is it time to move on to gene-based Salmonella typing: Evidence and implications
Indian Journal of Medical Microbiology
2023
Associations between Nutrigenomic Effects and Incidences of Microbial Resistance against Novel Antibiotics
Pharmaceuticals
2022
Large-scale comparative genomics to refine the organization of the global Salmonella enterica population structure
Microbial Genomics
2022
A case report of Salmonella enterica serovar Corvallis from environmental isolates from Cambodia and clinical isolates in the UK
Access Microbiology
2022
Genomic characteristics and comparative genomics analysis of Salmonella enterica subsp. enterica serovar Thompson isolated from an outbreak in South Korea
Scientific Reports
2022
Paratype: a genotyping tool for Salmonella Paratyphi A reveals its global genomic diversity
Nature Communications
2022
Whole Genome Multi-Locus Sequence Typing and Genomic Single Nucleotide Polymorphism Analysis for Epidemiological Typing of Pseudomonas aeruginosa From Indonesian Intensive Care Units
Frontiers in Microbiology
2022
Virulence Gene Profile, Antimicrobial Resistance and Multilocus Sequence Typing of Salmonella enterica Subsp. enterica Serovar Enteritidis from Chickens and Chicken Products
Animals
2022
A Practical Bioinformatics Workflow for Routine Analysis of Bacterial WGS Data
Microorganisms
2022
Phenotypic and molecular characterization of blaCTX-M-3 and blaCTX-M-55-producing monophasic Salmonella enterica serovar Typhimurium in Greece
Journal of Global Antimicrobial Resistance
2022
Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene blaNDM
Nature Communications
2022
Genomic surveillance of Salmonella spp. in the Philippines during 2013–2014
Transactions of The Royal Society of Tropical Medicine and Hygiene
2022
MGTdb: a web service and database for studying the global and local genomic epidemiology of bacterial pathogens
Database
2022
Salmonella Salamae and S. Waycross isolated from Nile perch in Lake Victoria show limited human pathogenic potential
Scientific Reports
2022
Exploiting genomics to mitigate the public health impact of antimicrobial resistance
Genome Medicine
2022
Using genetic markers for detection and subtyping of the emerging Salmonella enterica subspecies enterica serotype Muenchen
Poultry Science
2022
Machine Learning for Antimicrobial Resistance Prediction: Current Practice, Limitations, and Clinical Perspective
Clinical Microbiology Reviews
2022
Levels and genotypes of Salmonella and levels of Escherichia coli in frozen ready-to-cook chicken and turkey products in England tested in 2020 in relation to an outbreak of S. Enteritidis
International Journal of Food Microbiology
2022
Comparative Genomic Analysis Discloses Differential Distribution of Antibiotic Resistance Determinants between Worldwide Strains of the Emergent ST213 Genotype of Salmonella Typhimurium
Antibiotics
2022
Genome-wide networks reveal emergence of epidemic strains of Salmonella Enteritidis
International Journal of Infectious Diseases
2022
Genomic characteristics and comparative genomics of Salmonella enterica subsp. enterica serovar Schwarzengrund strain S16 isolated from chicken feces
Gut Pathogens
2021
Classification of Salmonella enterica of the (Para-)Typhoid Fever Group by Fourier-Transform Infrared (FTIR) Spectroscopy
Microorganisms
2021
Multiple introductions of multidrug-resistant typhoid associated with acute infection and asymptomatic carriage, Kenya
eLife
2021
Salmonella nomenclature in the genomic era: a time for change
Scientific Reports
2021
Characterization of a pESI-like plasmid and analysis of multidrug-resistant Salmonella enterica Infantis isolates in England and Wales
Microbial Genomics
2021
Salmonella Paratyphi B; Public Health and Parental Choice
Pediatric Infectious Disease Journal
2021
Whole Genome Sequencing Analysis of Salmonella enterica Serovar Typhi: History and Current Approaches
Microorganisms
2021
Evaluation of Salmonella Serotype Prediction With Multiplex Nanopore Sequencing
Frontiers in Microbiology
2021
A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch
Nature Communications
2021
An evaluation of the species and subspecies of the genus Salmonella with whole genome sequence data: Proposal of type strains and epithets for novel S. enterica subspecies VII, VIII, IX, X and XI
Genomics
2021
Comprehensive Foodomics
2021
Genomic Characterization of Salmonella enterica Isolates From Retail Meat in Beijing, China
Frontiers in Microbiology
2021
Genomic diversity of Salmonella enterica -The UoWUCC 10K genomes project
Wellcome Open Research
2021
Genomic population structure associated with repeated escape of Salmonella enterica ATCC14028s from the laboratory into nature
PLOS Genetics
2021
Assessment of Genetic Stability During Serial In Vitro Passage and In Vivo Carriage
Foodborne Pathogens and Disease
2021
Virulence Determinants and Genetic Diversity of Yersinia Species Isolated from Retail Meat
Pathogens
2021
Toward an Integrated Genome-Based Surveillance of Salmonella enterica in Germany
Frontiers in Microbiology
2021
Genomic Characterization of a Nalidixic Acid-Resistant Salmonella Enteritidis Strain Causing Persistent Infections in Broiler Chickens
Frontiers in Veterinary Science
2021
Methods in Molecular Biology
2021
Comparison of Antimicrobial Resistance Profiles in Salmonella spp. from Swine Upon Arrival and Postslaughter at the Abattoir
Microbial Drug Resistance
2021
Serotyping, MLST, and Core Genome MLST Analysis of Salmonella enterica From Different Sources in China During 2004–2019
Frontiers in Microbiology
2020
Isolation and characterisation of Vibrio cholerae from fish examined postmortem at ZSL London Zoo between 2014 and 2018
Veterinary Record
2020
Integrating whole-genome sequencing within the National Antimicrobial Resistance Surveillance Program in the Philippines
Nature Communications
2020
Optimizing open data to support one health: best practices to ensure interoperability of genomic data from bacterial pathogens
One Health Outlook
2020
German-Wide Interlaboratory Study Compares Consistency, Accuracy and Reproducibility of Whole-Genome Short Read Sequencing
Frontiers in Microbiology
2020
Differential Biophysical Behaviors of Closely Related Strains of Salmonella
Frontiers in Microbiology
2020
Multi‐country outbreak of Salmonella Enteritidis infections linked to eggs, third update – 6 February 2020
EFSA Supporting Publications
2020
Evaluation of real-time nanopore sequencing for Salmonella serotype prediction
Food Microbiology
2020
Genomic diversity of Salmonella enterica -The UoWUCC 10K genomes project
Wellcome Open Research
2020
Genomic characterization and phylogenetic analysis ofSalmonella entericaserovar Javiana
PeerJ
2020
Salmonella enterica Serovar Hvittingfoss in Bar-Tailed Godwits (Limosa lapponica) from Roebuck Bay, Northwestern Australia
Applied and Environmental Microbiology
2020
Municipal Wastewater Surveillance Revealed a High Community Disease Burden of a Rarely Reported and Possibly Subclinical Salmonella enterica Serovar Derby Strain
Applied and Environmental Microbiology
2020
Performance and Accuracy of Four Open-Source Tools for In Silico Serotyping of Salmonella spp. Based on Whole-Genome Short-Read Sequencing Data
Applied and Environmental Microbiology
2020
Molecular typing tools for identifying and characterizing lactic acid bacteria: a review
Food Science and Biotechnology
2020
Genetic diversity of clinical Salmonella enterica serovar Typhimurium in a university hospital of south Tunisia, 2000–2013
Infection, Genetics and Evolution
2020
Food Safety Genomics and Connections to One Health and the Clinical Microbiology Laboratory
Clinics in Laboratory Medicine
2020
Microbiological quality of raw drinking milk and unpasteurised dairy products: results from England 2013–2019
Epidemiology and Infection
2020
Community perspectives on the benefits and risks of technologically enhanced communicable disease surveillance systems: a report on four community juries
BMC Medical Ethics
2020
Genomic surveillance detects Salmonella enterica serovar Paratyphi A harbouring blaCTX-M-15 from a traveller returning from Bangladesh
PLOS ONE
2020
A genoserotyping system for a fast and objective identification of Salmonella serotypes commonly isolated from poultry and pork food sectors in Belgium
Food Microbiology
2020
A forecast model for prevention of foodborne outbreaks of non-typhoidal salmonellosis
PeerJ
2019
The use of next generation sequencing for improving food safety: Translation into practice
Food Microbiology
2019
Phylogenomic analysis of gastroenteritis-associated Clostridium perfringens in England and Wales over a 7-year period indicates distribution of clonal toxigenic strains in multiple outbreaks and extensive involvement of enterotoxin-encoding (CPE) plasmids
Microbial Genomics
2019
Novel strategies and tools for microbial risk assessment of foods of animal origin
IOP Conference Series: Earth and Environmental Science
2019
Detection of VIM-1-Producing Enterobacter cloacae and Salmonella enterica Serovars Infantis and Goldcoast at a Breeding Pig Farm in Germany in 2017 and Their Molecular Relationship to Former VIM-1-Producing S. Infantis Isolates in German Livestock Production
mSphere
2019
Epidemiology and Outcomes of Nontyphoidal Salmonella Bacteremias from England, 2004 to 2015
Journal of Clinical Microbiology
2019
Incidence and Characterization of Salmonella Isolates From Raw Meat Products Sold at Small Markets in Hubei Province, China
Frontiers in Microbiology
2019
Insight into an outbreak of Salmonella Choleraesuis var. Kunzendorf in wild boars
Veterinary Microbiology
2019
Pathogen Genomics in Public Health
New England Journal of Medicine
2019
Assessment and Comparison of Molecular Subtyping and Characterization Methods for Salmonella
Frontiers in Microbiology
2019
Livestock, food chain and public health risk assessment
EFSA Journal
2019
Whole genome sequencing and metagenomics for outbreak investigation, source attribution and risk assessment of food‐borne microorganisms
EFSA Journal
2019
Real-Time PCR Assay for Differentiation of Typhoidal and Nontyphoidal Salmonella
Journal of Clinical Microbiology
2019
Novel Insights Into the Spread of Enteric Pathogens Using Genomics
The Journal of Infectious Diseases
2019
Genomic approaches used to investigate an atypical outbreak of Salmonella Adjame
Microbial Genomics
2019
The Transformation of Reference Microbiology Methods and Surveillance for Salmonella With the Use of Whole Genome Sequencing in England and Wales
Frontiers in Public Health
2019
In silico Identification of Serovar-Specific Genes for Salmonella Serotyping
Frontiers in Microbiology
2019
SeqSero2: Rapid and Improved Salmonella Serotype Determination Using Whole-Genome Sequencing Data
Applied and Environmental Microbiology
2019
Gastrointestinal Diseases and their Associated Infections
2019
Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers
PLOS Neglected Tropical Diseases
2019
Comparative Genomic Analysis of Citrobacter and Key Genes Essential for the Pathogenicity of Citrobacter koseri
Frontiers in Microbiology
2019
Food Microbiology
2019
Novel Salmonella Variant Associated with Mortality in Two Great Spotted Woodpeckers (Dendrocopos major)
Journal of Wildlife Diseases
2019
Communicable Disease Surveillance Ethics in the Age of Big Data and New Technology
Asian Bioethics Review
2019
Characterizing Salmonella enterica Serovar Choleraesuis, var. Kunzendorf: A Comparative Case Study
Frontiers in Veterinary Science
2019
Public health risks associated with Salmonella contamination of imported edible betel leaves: Analysis of results from England, 2011–2017
International Journal of Food Microbiology
2019
Salmonella Serotyping; Comparison of the Traditional Method to a Microarray-Based Method and an in silico Platform Using Whole Genome Sequencing Data
Frontiers in Microbiology
2019
Multidrug-Resistant Salmonella enterica Serovar Rissen Clusters Detected in Azores Archipelago, Portugal
International Journal of Genomics
2019
Detailed Evaluation of Data Analysis Tools for Subtyping of Bacterial Isolates Based on Whole Genome Sequencing: Neisseria meningitidis as a Proof of Concept
Frontiers in Microbiology
2019
Identification and typing of Yersinia enterocolitica and Yersinia pseudotuberculosis isolated from human clinical specimens in England between 2004 and 2018
Journal of Medical Microbiology
2018
INNUENDO: A cross‐sectoral platform for the integration of genomics in the surveillance of food‐borne pathogens
EFSA Supporting Publications
2018
An assessment of the microbiological quality and safety of raw drinking milk on retail sale in England
Journal of Applied Microbiology
2018
Multi‐country outbreak of Salmonella Agona infections possibly linked to ready‐to‐eat food
EFSA Supporting Publications
2018
Salmonella enterica Prophage Sequence Profiles Reflect Genome Diversity and Can Be Used for High Discrimination Subtyping
Frontiers in Microbiology
2018
Distinct fermentation and antibiotic sensitivity profiles exist in salmonellae of canine and human origin
BMC Microbiology
2018
The utility and perspectives of NGS-based methods in BSL-3 and BSL-4 laboratory – sequencing and analysis strategies
Briefings in Functional Genomics
2018
Quantifying the Survival of Multiple Salmonella enterica Serovars In Vivo via Massively Parallel Whole-Genome Sequencing To Predict Zoonotic Risk
Applied and Environmental Microbiology
2018
Incorporating Whole-Genome Sequencing into Public Health Surveillance: Lessons from Prospective Sequencing ofSalmonellaTyphimurium in Australia
Foodborne Pathogens and Disease
2018
Validation of Whole-Genome Sequencing for Identification and Characterization of Shiga Toxin-Producing Escherichia coli To Produce Standardized Data To Enable Data Sharing
Journal of Clinical Microbiology
2018
Comparison of SNP-based subtyping workflows for bacterial isolates using WGS data, applied to Salmonella enterica serotype Typhimurium and serotype 1,4,[5],12:i:-
PLOS ONE
2018
For the Safety of Fresh Produce: Regulatory Considerations for Canada on the Use of Whole Genome Sequencing to Subtype Salmonella
Frontiers in Sustainable Food Systems
2018
Advanced Techniques in Diagnostic Microbiology
2018
Comparison of advanced whole genome sequence-based methods to distinguish strains of Salmonella enterica serovar Heidelberg involved in foodborne outbreaks in Québec
Food Microbiology
2018
A genomic overview of the population structure of Salmonella
PLOS Genetics
2018
Setup, Validation, and Quality Control of a Centralized Whole-Genome-Sequencing Laboratory: Lessons Learned
Journal of Clinical Microbiology
2018
First use of whole-genome sequencing to investigate a cluster of Yersinia enterocolitica, Liverpool, United Kingdom, 2017
Journal of Medical Microbiology
2018
Genomic Characterization of Extended-Spectrum Cephalosporin-Resistant Salmonella enterica in the Colombian Poultry Chain
Frontiers in Microbiology
2018
Comprehensive assessment of the quality of Salmonella whole genome sequence data available in public sequence databases using the Salmonella in silico Typing Resource (SISTR)
Microbial Genomics
2018
Evaluation of whole-genome sequencing for outbreak detection of Verotoxigenic Escherichia coli O157:H7 from the Canadian perspective
BMC Genomics
2018
Advances in Food and Nutrition Research
2018
Population Genomics
2018
Comparative genomics identifies distinct lineages of S. Enteritidis from Queensland, Australia
PLOS ONE
2018
Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak
International Journal of Food Microbiology
2018
National outbreak ofSalmonellaGive linked to a local food manufacturer in Malta, October 2016
Epidemiology and Infection
2018
Whole genome sequencing reveals an outbreak of Salmonella Enteritidis associated with reptile feeder mice in the United Kingdom, 2012-2015
Food Microbiology
2018
Persistent Infection and Long-Term Carriage of Typhoidal and Nontyphoidal Salmonellae
Clinical Microbiology Reviews
2018
Comparison of phenotypic and WGS-derived antimicrobial resistance profiles of Salmonella enterica serovars Typhi and Paratyphi
Journal of Antimicrobial Chemotherapy
2018
Will the emergence of core genome MLST end the role of in silico MLST?
Food Microbiology
2018
Imported edible leaves collected at retail sale in England during 2017 with an emphasis on betel and curry leaves: microbiological quality with respect toSalmonella, Shiga-toxin-producingE. coli(STEC) and levels ofEscherichia coli
Journal of Applied Microbiology
2018
Salmonella Enteritidis ST183: emerging and endemic biotypes affecting western European hedgehogs (Erinaceus europaeus) and people in Great Britain
Scientific Reports
2018
Antimicrobial resistance profiles of Shigella dysenteriae isolated from travellers returning to the UK, 2004–2017
Journal of Medical Microbiology
2018
Prediction of Phenotypic Antimicrobial Resistance Profiles From Whole Genome Sequences of Non-typhoidal Salmonella enterica
Frontiers in Microbiology
2018
Evaluation of Whole-Genome Sequencing for Identification and Typing of Vibrio cholerae
Journal of Clinical Microbiology
2018
Salmonella serovar distribution from non‐human sources in Italy; results from the IT‐Enter‐Vet network
Veterinary Record
2018
The role of whole genome sequencing in monitoring antimicrobial resistance: A biosafety and public health priority in the Arabian Peninsula
Journal of Infection and Public Health
2017
High Throughput Sequencing for Detection of Foodborne Pathogens
Frontiers in Microbiology
2017
Context Is Everything: Harmonization of Critical Food Microbiology Descriptors and Metadata for Improved Food Safety and Surveillance
Frontiers in Microbiology
2017
Subtyping Salmonella enterica serovar Derby with multilocus sequence typing (MLST) and clustered regularly interspaced short palindromic repeats (CRISPRs)
Food Control
2017
Investigation using whole genome sequencing of a prolonged restaurant outbreak of Salmonella Typhimurium linked to the building drainage system, England, February 2015 to March 2016
Eurosurveillance
2017
SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology
Microbial Genomics
2017
Public health surveillance in the UK revolutionises our understanding of the invasive Salmonella Typhimurium epidemic in Africa
Genome Medicine
2017
A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis
Frontiers in Microbiology
2017
Identification of Escherichia coli and Shigella Species from Whole-Genome Sequences
Journal of Clinical Microbiology
2017
Multi‐country outbreak of Salmonella Enteritidis infections linked to Polish eggs
EFSA Supporting Publications
2017
Probing Genomic Aspects of the Multi-Host Pathogen Clostridium perfringens Reveals Significant Pangenome Diversity, and a Diverse Array of Virulence Factors
Frontiers in Microbiology
2017
Impact of whole genome sequencing in Public Health reference laboratories
Microbiology Australia
2017
A brief primer on genomic epidemiology: lessons learned fromMycobacterium tuberculosis
Annals of the New York Academy of Sciences
2017
Phage typing or CRISPR typing for epidemiological surveillance of Salmonella Typhimurium?
BMC Research Notes
2017
Comparative whole genome analysis of three consecutive Salmonella diarizonae isolates
International Journal of Medical Microbiology
2017
Pan-genome Analyses of the Species Salmonella enterica, and Identification of Genomic Markers Predictive for Species, Subspecies, and Serovar
Frontiers in Microbiology
2017
Epidemiology, Pathogenesis, Genoserotyping, Antimicrobial Resistance, and Prevention and Control of Non-Typhoidal Salmonella Serovars
Current Clinical Microbiology Reports
2017
The Validation and Implications of Using Whole Genome Sequencing as a Replacement for Traditional Serotyping for a National Salmonella Reference Laboratory
Frontiers in Microbiology
2017
Preliminary Transcriptome Analysis of Mature Biofilm and Planktonic Cells of Salmonella Enteritidis Exposure to Acid Stress
Frontiers in Microbiology
2017
Infection control in the new age of genomic epidemiology
American Journal of Infection Control
2017
Metagenomics: The Next Culture-Independent Game Changer
Frontiers in Microbiology
2017
Survey on the Use of Whole-Genome Sequencing for Infectious Diseases Surveillance: Rapid Expansion of European National Capacities, 2015–2016
Frontiers in Public Health
2017
Examining the Link between Biofilm Formation and the Ability of Pathogenic Salmonella Strains to Colonize Multiple Host Species
Frontiers in Veterinary Science
2017
Multi‐country outbreak of Salmonella Enteritidis phage type 8, MLVA profile 2‐9‐7‐3‐2 and 2‐9‐6‐3‐2 infections
EFSA Supporting Publications
2016
MOST: a modified MLST typing tool based on short read sequencing
PeerJ
2016
Diagnosing tuberculosis in the 21st century – Dawn of a genomics revolution?
International Journal of Mycobacteriology
2016
Use of whole-genome sequencing for the public health surveillance of Shigella sonnei in England and Wales, 2015
Journal of Medical Microbiology
2016
Characterization of new Salmonella serovars by whole-genome sequencing and traditional typing techniques
Journal of Medical Microbiology
2016
WGS for surveillance of antimicrobial resistance: a pilot study to detect the prevalence and mechanism of resistance to azithromycin in a UK population of non-typhoidalSalmonella
Journal of Antimicrobial Chemotherapy
2016
Genomic analysis of Salmonella enterica serotype Paratyphi A during an outbreak in Cambodia, 2013–2015
Microbial Genomics
2016
Microbial bioinformatics 2020
Microbial Biotechnology
2016
Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing
Clinical Microbiology Reviews
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