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2025
Escherichia Phage Ge15, NRG-P0073: Genomic Characterization and Host Range Analysis Against the ECOR Reference Library
PHAGE
2025
Transcriptome Analysis of the Fat Body of the Maize Pest Delphacodes kuscheli (Hemiptera: Delphacidae) Reveals Essential Roles of Fungal Endosymbionts
Microbial Ecology
2025
Computational Systems Biology Methods for Cross‐Disease Comparison of Omics Data
WIREs Computational Molecular Science
2025
De novo transcriptome assembly and analysis during agarwood induction in Gyrinops versteegii Gilg. seedling
Scientific Reports
2025
In-silico and Phylogenetic Analysis of Acetate: Succinate COA-Transferase (ASCT) from Angiostrongylus malaysiensis
Pertanika Journal of Tropical Agricultural Science
2025
Transcriptomic analyses in thirteen Tephritidae species provide insights into the ecological driving force behind odorant receptor evolution
Molecular Phylogenetics and Evolution
2025
Complete genome sequence of Bacillus subtilis bacteriophage Adastra
Microbiology Resource Announcements
2025
FAIR principles in workflows: A GIScience workflow management system for reproducible and replicable studies
International Journal of Applied Earth Observation and Geoinformation
2025
Signatures of Endosymbiosis in Mitochondrial Genomes of Rhabdocoel Flatworms
Molecular Ecology
2024
De novo transcriptomes of cave and surface isopod crustaceans: insights from 11 species across three suborders
Scientific Data
2024
Improved influenza A whole-genome sequencing protocol
Frontiers in Cellular and Infection Microbiology
2024
Proceedings of the 2nd Workshop on Workflows in Distributed Environments
2024
The Families of Non-LTR Transposable Elements within Neritimorpha and Other Gastropoda
Genes
2024
Gene expression analysis identifies hub genes and pathways distinguishing fatal from survivor outcomes of Ebola virus disease
FASEB BioAdvances
2024
Sequencing Strategy to Ensure Accurate Plasmid Assembly
ACS Synthetic Biology
2024
Alone as effective as together: AMF and Trichoderma inoculation boost maize performance but differentially shape soil and rhizosphere microbiota
Journal of Sustainable Agriculture and Environment
2024
A Comprehensive Transcriptomic and Proteomics Analysis of Candidate Secretory Proteins in Rose Grain Aphid, Metopolophium dirhodum (Walker)
Current Issues in Molecular Biology
2024
Unraveling New Frontiers and Advances in Bioinformatics
2024
Draft genome sequence of Neofusicoccum caryigenum associated with pecan leaf dieback
Microbiology Resource Announcements
2024
The venom and telopodal defence systems of the centipede Lithobius forficatus are functionally convergent serial homologues
BMC Biology
2024
Complete genomic analysis of Escherichia phage Mangalyan infecting Escherichia fergusonii
Microbiology Resource Announcements
2023
All About Bioinformatics
2023
Value-Addition in Agri-food Industry Waste Through Enzyme Technology
2023
Genomics of Crucifer's Host- Pathosystem
2023
Understanding Snail Mucus Biosynthesis and Shell Biomineralisation through Genomic Data Mining of the Reconstructed Carbohydrate and Glycan Metabolic Pathways of the Giant African Snail (Achatina fulica)
Biology
2023
Galaxy for open-source computational drug discovery solutions
Expert Opinion on Drug Discovery
2023
Extracellular polymeric substances are closely related to land cover, microbial communities, and enzyme activity in tropical soils
Soil Biology and Biochemistry
2023
Beneficial microbial consortium improves winter rye performance by modulating bacterial communities in the rhizosphere and enhancing plant nutrient acquisition
Frontiers in Plant Science
2023
Bioinformatics for wet-lab scientists: practical application in sequencing analysis
BMC Genomics
2023
Improved DNA Amplification of the Hallmark IS 900 Element in Mycobacterium avium subsp. paratuberculosis : a Reexamination Based on Whole-Genome Sequence Analysis
Applied and Environmental Microbiology
2023
The structure of the tetraploid sour cherry ‘Schattenmorelle’ (Prunus cerasus L.) genome reveals insights into its segmental allopolyploid nature
Frontiers in Plant Science
2023
Discovery of putative long non-coding RNAs expressed in the eyes of Astyanax mexicanus (Actinopterygii: Characidae)
Scientific Reports
2022
Networks of free-living nematodes and co-extracted fungi, associated with symptoms of apple replant disease
Applied Soil Ecology
2022
Toward a CRISPR-Cas9-Based Gene Drive in the Diamondback Moth Plutella xylostella
The CRISPR Journal
2022
Full Issue PDF
Molecular Plant-Microbe Interactions®
2022
Chromosome-level assembly of the Phytophthora agathidicida genome reveals adaptation in effector gene families
Frontiers in Microbiology
2022
Comparative genomics reveals putative evidence for high-elevation adaptation in the American pika (Ochotona princeps)
G3 Genes|Genomes|Genetics
2022
High-Quality, Phased Genomes of Phytophthora ramorum Clonal Lineages NA1 and EU1
Molecular Plant-Microbe Interactions®
2022
A Practical Bioinformatics Workflow for Routine Analysis of Bacterial WGS Data
Microorganisms
2022
Enterobacteria Phage Ac3's Genome Annotation and Host Range Analysis Against the ECOR Reference Library
PHAGE
2022
Cap-snatching as a possible contributor to photosynthesis shut-off
Journal of General Virology
2022
Development of dim-light vision in the nocturnal reef fish family Holocentridae. I: Retinal gene expression
Journal of Experimental Biology
2022
Bioinformatics in Plant Breeding and Research on Disease Resistance
Plants
2022
NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology
PeerJ
2022
Nematode–Microbe Complexes in Soils Replanted with Apple
Microorganisms
2022
Proceedings of the 2022 International Conference on Computer, Control, Informatics and Its Applications
2021
In-depth Phylogenomic Analysis of Arbuscular Mycorrhizal Fungi Based on a Comprehensive Set of de novo Genome Assemblies
Frontiers in Fungal Biology
2021
Genomic and Proteomic Study of Andreprevotia ripae Isolated from an Anthill Reveals an Extensive Repertoire of Chitinolytic Enzymes
Journal of Proteome Research
2021
The draft chromosome-level genome assembly of tetraploid ground cherry (Prunus fruticosa Pall.) from long reads
Genomics
2021
Building a reference transcriptome for Juniperus squamata (Cupressaceae) based on single-molecule real-time sequencing
BMC Genomic Data
2021
Crosstalk between nitric oxide and retinoic acid pathways is essential for amphioxus pharynx development
eLife
2021
Complete Genome Sequence of the Virulent Klebsiella pneumoniae Phage Geezett Infecting Multidrug-Resistant Clinical Strains
Microbiology Resource Announcements
2021
IsoTV: processing and visualizing functional features of translated transcript isoforms
Bioinformatics
2021
Differential Bacteriophage Efficacy in Controlling Salmonella in Cattle Hide and Soil Models
Frontiers in Microbiology
2021
Whole genome characterization of Streptococcus pneumoniae from respiratory and blood cultures collected from Canadian hospitals before and after PCV-13 implementation in Canada: Focus on serotypes 22F and 33F from CANWARD 2007–2018
Vaccine
2021
Plastid phylogenomics resolves ambiguous relationships within the orchid family and provides a solid timeframe for biogeography and macroevolution
Scientific Reports
2020
Galaxy and Apollo as a biologist-friendly interface for high-quality cooperative phage genome annotation
PLOS Computational Biology
2020
Optimizing computational resource management for the scientific gateways ecosystems based on the service‐oriented paradigm
Software: Practice and Experience
2020
The roles of hybridization and habitat fragmentation in the evolution of Brazil’s enigmatic longwing butterflies, Heliconius nattereri and H. hermathena
BMC Biology
2019
Complete Genome Sequence of Klebsiella pneumoniae Siphophage Seifer
Microbiology Resource Announcements
2019
Complete Genome Sequence of Klebsiella pneumoniae Podophage Patroon
Microbiology Resource Announcements
2019
Complete Genome Sequences of Staphylococcus epidermidis Myophages Quidividi, Terranova, and Twillingate
Microbiology Resource Announcements
2019
Parallel Evolution of Complex Centipede Venoms Revealed by Comparative Proteotranscriptomic Analyses
Molecular Biology and Evolution
2019
A reference genome for pea provides insight into legume genome evolution
Nature Genetics
2019
Complete Genome Sequence of Enterotoxigenic Escherichia coli Podophage LL11
Microbiology Resource Announcements
2019
Complete Genome Sequence of Salmonella enterica Serovar Typhimurium Siphophage Seabear
Microbiology Resource Announcements
2019
Complete Genome Sequence of Proteus mirabilis Siphophage Stubb
Microbiology Resource Announcements
2019
Complete Genome Sequence of Serratia marcescens Siphophage Serbin
Microbiology Resource Announcements
2019
Complete Genome Sequence of Citrobacter freundii Myophage Maleficent
Microbiology Resource Announcements
2019
Complete Genome Sequence of Klebsiella pneumoniae Myophage Menlow
Microbiology Resource Announcements
2019
Complete Genome Sequence of Salmonella enterica Serovar Typhimurium Siphophage Siskin
Microbiology Resource Announcements
2019
Complete Genome Sequence of Klebsiella pneumoniae Podophage Pylas
Microbiology Resource Announcements
2019
Complete Genome Sequence of Salmonella enterica Serovar Heidelberg Myophage Meda
Microbiology Resource Announcements
2019
Complete Genome Sequence of Salmonella enterica Serovar Newport Myophage Melville
Microbiology Resource Announcements
2019
DNA Packaging and Genomics of theSalmonella9NA-Like Phages
Journal of Virology
2019
Investigation of the estuarine stonefish (Synanceia horrida) venom composition
Journal of Proteomics
2019
A Centipede Toxin Family Defines an Ancient Class of CSαβ Defensins
Structure
2019
Complete Genome Sequence of Salmonella enterica Serovar Typhimurium Siphophage Skate
Microbiology Resource Announcements
2019
Complete Genome Sequence of Staphylococcus aureus Siphophage Lorac
Microbiology Resource Announcements
2019
Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315
Scientific Reports
2019
Coding-Complete Genome Sequence of Staphylococcus aureus Podophage Portland
Microbiology Resource Announcements
2019
Complete Genome Sequence of Salmonella enterica Serovar Enteritidis Myophage Mooltan
Microbiology Resource Announcements
2019
A History-Based Resource Manager for Genome Analysis Workflows Applications on Clusters with Heterogeneous Nodes
International Journal of Parallel Programming
2019
Complete Genome Sequence of Salmonella enterica Serovar Typhimurium Myophage Mutine
Microbiology Resource Announcements
2019
Complete Genome Sequence of Klebsiella pneumoniae Myophage Mineola
Microbiology Resource Announcements
2019
Complete Genome Sequence of Klebsiella pneumoniae Siphophage Sanco
Microbiology Resource Announcements
2019
Complete Genome Sequence of Klebsiella pneumoniae Myophage Mulock
Microbiology Resource Announcements
2019
A High-Quality Grapevine Downy Mildew Genome Assembly Reveals Rapidly Evolving and Lineage-Specific Putative Host Adaptation Genes
Genome Biology and Evolution
2019
Complete Genome Sequence of Salmonella enterica Serovar Heidelberg Siphophage Sepoy
Microbiology Resource Announcements
2019
Complete Genome Sequence of Klebsiella pneumoniae Myophage May
Microbiology Resource Announcements
2019
Complete Genome Sequence of Serratia marcescens Siphophage Scapp
Microbiology Resource Announcements
2019
Complete Genome Sequence of Proteus mirabilis Phage Mydo
Microbiology Resource Announcements
2019
Complete Genome Sequence of Salmonella enterica Serovar Enteritidis Siphophage Seafire
Microbiology Resource Announcements
2019
A secreted WY-domain-containing protein present in European isolates of the oomycete Plasmopara viticola induces cell death in grapevine and tobacco species
PLOS ONE
2019
Complete Genome Sequence of Enterotoxigenic Escherichia coli Myophage LL12
Microbiology Resource Announcements
2019
Complete Genome Sequence of Proteus mirabilis Phage Myduc
Microbiology Resource Announcements
2019
Complete Genome Sequence of Citrobacter freundii Myophage Maroon
Microbiology Resource Announcements
2019
Intercellular communication is required for trap formation in the nematode-trapping fungus Duddingtonia flagrans
PLOS Genetics
2019
Complete Genome Sequence of Citrobacter freundii Siphophage Sazh
Microbiology Resource Announcements
2018
A Workflow Management System for Scalable Data Mining on Clouds
IEEE Transactions on Services Computing
2018
Genome-Wide Association Studies Reveal Genomic Regions Associated With the Response of Wheat (Triticum aestivum L.) to Mycorrhizae Under Drought Stress Conditions
Frontiers in Plant Science
2018
Draft Genome Sequence for the Tree PathogenPhytophthora plurivora
Genome Biology and Evolution
2018
Xapuri virus, a novel mammarenavirus: natural reassortment and increased diversity between New World viruses
Emerging Microbes & Infections
2018
Coordinated RNA-Seq and peptidomics identify neuropeptides and G-protein coupled receptors (GPCRs) in the large pine weevil Hylobius abietis, a major forestry pest
Insect Biochemistry and Molecular Biology
2018
Complete Genome Sequence of Klebsiella pneumoniae Siphophage Sugarland
Microbiology Resource Announcements
2018
PHAB toxins: a unique family of predatory sea anemone toxins evolving via intra-gene concerted evolution defines a new peptide fold
Cellular and Molecular Life Sciences
2018
Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization
Clinical Proteomics
2018
Molecular characterization of predominant Streptococcus pneumoniae serotypes causing invasive infections in Canada: the SAVE study, 2011–15
Journal of Antimicrobial Chemotherapy
2018
Facebook-based cloud resource sharing
Computers & Electrical Engineering
2018
Comparative Genomics of the Baltic Sea Toxic Cyanobacteria Nodularia spumigena UHCC 0039 and Its Response to Varying Salinity
Frontiers in Microbiology
2018
Free-Living Nematodes Together With Associated Microbes Play an Essential Role in Apple Replant Disease
Frontiers in Plant Science
2018
Phytophthora parasiticaEffector PpRxLR2 SuppressesNicotiana benthamianaImmunity
Molecular Plant-Microbe Interactions®
2018
True Lies: Using Proteomics to Assess the Accuracy of Transcriptome-Based Venomics in Centipedes Uncovers False Positives and Reveals Startling Intraspecific Variation in Scolopendra subspinipes
Toxins
2017
2017 Fifth International Symposium on Computing and Networking (CANDAR)
2017
Quantitative analysis of the tomato nuclear proteome during Phytophthora capsici infection unveils regulators of immunity
New Phytologist
2017
Revisiting venom of the sea anemone Stichodactyla haddoni : Omics techniques reveal the complete toxin arsenal of a well-studied sea anemone genus
Journal of Proteomics
2016
Clinical Virology Manual
2016
Using registries to integrate bioinformatics tools and services into workbench environments
International Journal on Software Tools for Technology Transfer
2016
Next-Generation Sequencing and the Crustacean Immune System: The Need for Alternatives in Immune Gene Annotation
Integrative and Comparative Biology
2016
The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp
BMC Genomics
2016
Development of a cloud-based platform for reproducible science: A case study of an IUCN Red List of Ecosystems Assessment
Ecological Informatics
2016
Cloning and Functional Characterization of Cycloartenol Synthase from the Red Seaweed Laurencia dendroidea
PLOS ONE
2016
Gene expression changes in diapause or quiescent potato cyst nematode,Globodera pallida, eggs after hydration or exposure to tomato root diffusate
PeerJ
2016
blastjs: a BLAST+ wrapper for Node.js
BMC Research Notes
2016
Proteomic analysis of silenced cathepsin B expression suggests non-proteolytic cathepsin B functionality
Biochimica et Biophysica Acta (BBA) - Molecular Cell Research
2016
Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets
BMC Genomics
2016
Serological and Virological Evidence of Crimean-Congo Haemorrhagic Fever Virus Circulation in the Human Population of Borno State, Northeastern Nigeria
PLOS Neglected Tropical Diseases
2015
Influence of a Non-Hospital Medical Care Facility on Antimicrobial Resistance in Wastewater
PLOS ONE
2015
Draft Genome Sequence of Pseudomonas putida JLR11, a Facultative Anaerobic 2,4,6-Trinitrotoluene Biotransforming Bacterium
Genome Announcements
2015
Comparison of the Mitochondrial Genomes and Steady State Transcriptomes of Two Strains of the Trypanosomatid Parasite, Leishmania tarentolae
PLOS Neglected Tropical Diseases
2015
Comparative RNA-seq analysis of the Tritrichomonas foetus PIG30/1 isolate from pigs reveals close association with Tritrichomonas foetus BP-4 isolate ‘bovine genotype’
Veterinary Parasitology
2015
NCBI BLAST+ integrated into Galaxy
Gigascience
2015
Lecture Notes in Computer Science
2014
Methods in Molecular Biology
2014
Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida
BMC Genomics
2014
Proceedings of the 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics
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