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2026
Disentangling subspecies delimitation in Heldreichia bupleurifolia Boiss. (Brassicaceae) through genomic and quantitative morphological approaches
Molecular Phylogenetics and Evolution
2026
Resolving reticulate evolutionary histories of polyploid species of Azorella (Apiaceae) endemic to New Zealand
Molecular Phylogenetics and Evolution
2026
Microbial valorisation of PET-derived terephthalic acid by Rhizopus arrhizus: towards plastic waste biotransformation
Bioresource Technology
2026
Inverse Latitudinal Diversity Gradient, Systematics and Historical Biogeography in the Gomphocerinae Grasshoppers (Orthoptera, Acrididae)
Zoologica Scripta
2026
Diversification and hybridization in Andinocleome (Cleomaceae)
Molecular Phylogenetics and Evolution
2025
Phasing in and out of phytophagy: Phylogeny and evolution of the family Eurytomidae (Hymenoptera: Chalcidoidea) based on Ultraconserved Elements
Systematic Entomology
2025
Ancient climate changes and relaxed selection shape cave colonization in North American cavefishes
Proceedings of the Royal Society B: Biological Sciences
2025
The Genomic Landscape, Causes, and Consequences of Extensive Phylogenomic Discordance in Murine Rodents
Genome Biology and Evolution
2025
Systematics of the fleshy‐fruited Sonerileae (Melastomataceae)
TAXON
2025
Avian Lifespan Network Reveals Shared Mechanisms and New Key Players in Animal Longevity
Aging Cell
2025
Comparative phylogenetic analyses of RNA editing in fern plastomes suggest possible adaptive innovations
New Phytologist
2025
A tale of two lineages: comparative biogeography across the Southern Cone of two South American Carex (Cyperaceae) groups
Annals of Botany
2025
Phylogenomic study of Orostachys using Angiosperms353: polyphyly of subsections with taxonomic consequences
Frontiers in Plant Science
2025
Phylogenomics of African Melastomateae (Melastomataceae): Revisiting generic relationships, placement of three enigmatic taxa and description of two new genera
TAXON
2025
Rampant Reticulation in a Rapid Radiation of Tropical Trees—Insights from Inga (Fabaceae)
Systematic Biology
2025
Gastritis over Gastrisus Sharp (Coleoptera: Staphylinidae: Xanthopygina): Resolving a major taxonomic impediment with phylogenomics
Systematic Entomology
2025
Ultraconserved element (UCE) phylogenomics illuminates the evolutionary history and biogeography of Dorymyrmex pyramid ants
Systematic Entomology
2025
Evolutionary history of ponerine ants highlights how the timing of dispersal events shapes modern biodiversity
Nature Communications
2025
Chromosome-Scale Genomes of the Flightless Caterpillar Hunter Beetles Calosoma tepidum and Calosoma wilkesii From British Columbia (Coleoptera: Carabidae)
Genome Biology and Evolution
2025
Elucidation of the phylogeny of Cucurbitaceae, particularly Trichosanthes, based on plastome data and nuclear single-copy genes
BMC Plant Biology
2025
TaxaGO: a novel, phylogenetically informed gene ontology enrichment analysis tool
Briefings in Bioinformatics
2025
The first record of Porcupinella profunda from the North Pacific, Aleutian Trench documents phylogenetic position in the Umbellulidae
Progress in Oceanography
2025
Phylogenomic species delimitation of studfishes (Fundulidae: Fundulus): evidence for cryptic species in agreement with the central highlands vicariance hypothesis
Zootaxa
2025
A phylogenetic analysis of scale insects (Hemiptera, Coccoidea) based on genomic and transcriptomic data
Journal of Systematics and Evolution
2025
Phylogenetics and evolution of Digitaria grasses, including cereal crops fonio, raishan and Polish millet
Annals of Botany
2025
Phylogeny of Palicoureeae (Rubiaceae) based on 353 low-copy nuclear genes – with particular focus on Hymenocoleus Robbr.
Molecular Phylogenetics and Evolution
2025
Microsatellite marker resource, genetic diversity, bottleneck, and expected habitat inferences for conservation of critically endangered Saussurea costus (Falc.) Lipsch
Journal of Applied Research on Medicinal and Aromatic Plants
2025
Genome-wide markers test the status of two putative species of North American bumble bees
Conservation Genetics
2025
Advancing phylogenomics in Amaranthaceae sensu stricto: Development and application of a new nuclear target enrichment bait set
Applications in Plant Sciences
2025
Ancient Introgression Explains Mitochondrial Genome Capture and Mitonuclear Discordance Among South American Collared Tropidurus Lizards
Molecular Ecology
2025
Genome Wide Analyses Corroborate Cryptic Speciation in Anurida maritima (Collembola, Poduromorpha)
Zoologica Scripta
2025
A phylogenetic approach to prioritizing crop wild relatives in Brassiceae (Brassicaceae) for breeding applications
Annals of Botany
2025
Increased phenotypic diversity as a consequence of ecological opportunity in the island radiation of Sulawesi ricefishes (Teleostei: Adrianichthyidae)
BMC Ecology and Evolution
2025
Discordance Down Under: Combining Phylogenomics and Fungal Symbioses to Detangle Difficult Nodes in a Diverse Tribe of Australian Terrestrial Orchids
Systematic Biology
2025
Phylogenomic insights into the origin of the Norton grape
PLANTS, PEOPLE, PLANET
2025
Phylogenomics resolves the relationships among Hydrophiloidea‐Histeroidea families (Coleoptera) and challenges the single colonization of aquatic habitats
Systematic Entomology
2025
Two new species of Ormyrus Westwood (Hymenoptera: Ormyridae) from Cynipidae (Hymenoptera) galls on Silphium L. (Asteraceae: Heliantheae)
Zootaxa
2025
Hepatincolaceae (Alphaproteobacteria) are Distinct From Holosporales and Independently Evolved to Associate With Ecdysozoa
Environmental Microbiology
2025
Phylogenomic insights into Adenophora and its allies (Campanulaceae): Revisiting generic delimitation and hybridization dynamics
Plant Diversity
2025
Ant phylogeny is not resolved by the application of site heterogeneous models
Communications Biology
2025
Evaluating the utility of deep genome skimming for phylogenomic analyses: A case study in the species-rich genus Rhododendron
Plant Diversity
2025
Exploring the ecological and functional adaptations in cephalopod beak morphology
Organisms Diversity & Evolution
2025
Can whole genome sequencing resolve taxonomic ambiguities in fungi? The case study of Colletotrichum associated with ferns
Frontiers in Fungal Biology
2025
Phylogenomic placement of a new genus and species of jumping spiders (Araneae: Salticidae: Spartaeini) based on UCE data
Invertebrate Systematics
2025
Phylogenomics provides new insight into the phylogeny and diversification of Asian Lappula (Boraginaceae)
Molecular Phylogenetics and Evolution
2025
Phylogeny and biogeography of Impatiens sect. Racemosae (Balsaminaceae) based on nrDNA and plastome sequences, emphasizing diversification in the Himalaya and the Hengduan Mountains
TAXON
2025
Convergent Evolution in Amblyopsid Cavefishes and the Age of Eastern North American Subterranean Ecosystems
Molecular Biology and Evolution
2025
Phylogenomics unveils Afrotropical origin, trans‐oceanic global diversification and climatic niche conservatism in the sedentary Zodariidae ant spiders
Systematic Entomology
2025
Phylogenomics Resolve the Systematics and Biogeography of the Ant Tribe Myrmicini and Tribal Relationships within the Hyperdiverse Ant Subfamily Myrmicinae
Systematic Biology
2025
The complete chloroplast genome of the Korean endemic plant Sorbaria sorbifolia var. glandulifolia J.-H. Song & S.-P. Hong (Rosaceae) and phylogenetic analysis
Mitochondrial DNA Part B
2025
Integrating genome‐wide traits and multi‐loci phylogeny to investigate orchid evolution—A case study on Pleurothallidinae
The Plant Journal
2025
The mitochondrial genome of the steppe carpenter moth (Paracossulus thrips Hübner, 1818): Structural analysis and phylogenetic implications
Scientific Reports
2025
Phylogenetic Insights from a Novel Rehubryum Species Challenge Generic Boundaries in Orthotrichaceae
Plants
2025
Independent and repeated acquisition of Sodalis endosymbiotic bacteria across the diversification of feather lice
Royal Society Open Science
2025
A new phylogeny of Anastrepha (Diptera: Tephritidae) based on nuclear loci obtained by phylogenomic methods
Systematic Entomology
2025
Characterisation of the genome and secretome of Phytophthora cryptogea and P. erythroseptica
IMA Fungus
2025
Neillia daloushanensis, a new species of Neillia (Rosaceae) from southwest China
PhytoKeys
2025
Biogeographic History of Pigeons and Doves Drives the Origin and Diversification of Their Parasitic Body Lice
Systematic Biology
2025
Whole genome data confirm pervasive gene discordance in the evolutionary history of Coenonympha (Nymphalidae) butterflies
Molecular Phylogenetics and Evolution
2025
Comparative plastome analyses and phylogenetic insights of Elatostema
BMC Plant Biology
2025
Evolutionary genomics reveals variation in structure and genetic content implicated in virulence and lifestyle in the genus Gaeumannomyces
BMC Genomics
2025
Phylogenomic analyses of rare Neotropical lineages reveal the independent loss of antennal rami in railroad-worm beetles (Coleoptera: Phengodidae)
Arthropod Systematics & Phylogeny
2025
Escherichia marmotae: a multidrug-resistant opportunistic human pathogen — first clinical isolation in the Czech Republic
Folia Microbiologica
2025
Phylogenomics reveals the timescale of diversification in Amblycera
Systematic Entomology
2025
Island geography drives evolution of rattan palms in tropical Asian rainforests
Science
2025
A nuclear phylogenomic tree of grasses (Poaceae) recovers current classification despite gene tree incongruence
New Phytologist
2025
Diversity and biogeography of mesophotic and bathyal Onuphidae (Annelida: Eunicida) of the Western Mediterranean sea
Deep Sea Research Part I: Oceanographic Research Papers
2025
A Population Genomics Approach to Understand the Diversity, Migration, and Reproduction of the Rice Pathogen Cercospora janseana
Molecular Plant-Microbe Interactions®
2025
Evolutionary history of Neotropical butterflies of the infratribe Neosatyriti based on target enrichment (Lepidoptera: Nymphalidae, Satyrinae, Satyrini, Pronophilina)
Invertebrate Systematics
2025
Four new species of Leptanillinae (Hymenoptera: Formicidae) from northern Vietnam described with phylogenomics and micro-computed tomography
European Journal of Taxonomy
2025
Phylogenomic incongruence gives new perspectives on the taxonomic complexity of Muscari s.l. (Asparagaceae, Scilloideae)
TAXON
2025
Astragalean819: An Astragalean clade‐specific bait set to resolve phylogenetic relationships in Astragalus
Applications in Plant Sciences
2025
A phylogenomic approach to disentangling the evolution of the large and diverse daisy tribe Anthemideae (Asteraceae)
Journal of Systematics and Evolution
2025
Homoploid hybrid speciation and recurrent hybridization along the northwestern Iberian mountain chains
Annals of Botany
2025
Pliocene Forest Fragmentation Shaped Speciation in Tropical Asia's Giant Squirrels (Ratufa)
Molecular Ecology
2025
Genomic DNA barcodes provide novel insights into species delimitation in the complex Camellia sect. Thea (Theaceae)
BMC Plant Biology
2025
Evolution of the North American seed‐harvester ant genus Veromessor (Hymenoptera: Formicidae)
Systematic Entomology
2025
Uncovering new lineages in the Sunda pangolin ( Manis javanica ) with museum mitogenomics
Biology Letters
2025
Phylogenetic relationships and the repeated loss of traits associated with sicklebill pollination in Centropogon subgenus Centropogon (Campanulaceae)
American Journal of Botany
2025
The first haplotype-resolved genome assembly of Prunus s.l. subgenus Laurocerasus (Prunus spinulosa)
Plant Diversity
2025
Widely acclaimed but poorly named: Phylogeny and systematics of the African daisy genus Dimorphotheca (Asteraceae, Calenduleae)
TAXON
2025
Urticaceae542 as a novel probe set combining universal and lineage-specific loci for phylogenomics of Urticaceae
Scientific Reports
2025
Convergent evolution in nuclear and mitochondrial OXPHOS subunits underlies the phylogenetic discordance in deep lineages of Squamata
Molecular Phylogenetics and Evolution
2025
Lineage-specific targets of positive selection in three leaf beetles correspond with defence capacity against their shared parasitoid wasp
Heredity
2025
Maximising informativeness for target capture-based phylogenomics in Erica (Ericaceae)
PhytoKeys
2025
Unraveling evolutionary pathways: allopolyploidization and introgression in polyploid Prunus (Rosaceae)
The Plant Journal
2025
Functional and genomic analyses of plant growth promoting traits in Priestia aryabhattai and Paenibacillus sp. isolates from tomato rhizosphere
Scientific Reports
2025
Molecular phylogenetic study of Argyreia (Ipomoeeae: Convolvulaceae) and implications for its systematics
Systematics and Biodiversity
2025
Ortho2Web: a workflow for disentangling the roles of hybridization and allopolyploidization in reticulation within Campanulaceae
BMC Biology
2025
Phylogenomic conflict analyses of plastid and mitochondrial genomes of Impatiens (Balsaminaceae) reveal its complex evolutionary history
Molecular Phylogenetics and Evolution
2025
PRDM9 drives the location and rapid evolution of recombination hotspots in salmonid fish
PLOS Biology
2025
Ynesmexia: A novel genus uniting morphologically disparate cheilanthoid ferns (Pteridaceae)
TAXON
2025
A comparison of phylogenomic inference pipelines for low‐coverage whole‐genome sequencing in Formica ants
Systematic Entomology
2025
Phylogenomics and macroevolution of a florally diverse Neotropical plant clade
Evolution
2025
Genomic evidence for flies as carriers of zoonotic pathogens on dairy farms
npj Biofilms and Microbiomes
2025
The winner takes it all: a single genotype of Kalanchoe × houghtonii is a global invader
Annals of Botany
2025
Exploring the phylogenomics of Dipcadi (Asparagaceae, Scilloideae) and assessing the utility of ITS as a DNA barcode
Plant Systematics and Evolution
2025
Origin of obligate dim-light foraging in nomiine sweat bees (Halictidae: Nomiinae), with the description of a new species of Mellitidia
Arthropod-Plant Interactions
2025
Evolutionary history, novel lineages and symbiont coevolution in the ant tribe Camponotini (Hymenoptera: Formicidae)
Systematic Entomology
2025
Resolving taxonomic uncertainty and exploring evolutionary relationships in the Cymopterus terebinthinus (Apiaceae) species complex
TAXON
2025
Phylogenetic relationships among seven freshwater red algal genera in the Batrachospermaceae (Batrachospermales, Rhodophyta) using complete chloroplast genome data
Journal of Phycology
2025
Expanded phylogeny of Nomadinae (Hymenoptera: Apidae) with integration of UCE and DNA barcode sequence data
Insect Systematics and Diversity
2025
A robust phylogenomic framework supports a revised intrafamilial classification of Urticaceae
Plant Diversity
2025
Multiple Horizontal Transfers of Immune Genes Between Distantly Related Teleost Fishes
Molecular Biology and Evolution
2025
Evaluating UCE Data Adequacy and Integrating Uncertainty in a Comprehensive Phylogeny of Ants
Systematic Biology
2025
Resolving Phylogenetic Relationships of a Recently and Rapidly Evolving Lineage from Western North America (Mentzelia Section Bartonia, Loasaceae)
Systematic Botany
2025
Phylogenomic support for the allopolyploid origin of the northwest Iberian endemic orchid Dactylorhiza cantabrica with Hyb‐Seq
Journal of Systematics and Evolution
2025
Molecular phylogenetics and historical biogeography of Mansoa DC. (Bignonieae, Bignoniaceae)
Botanical Journal of the Linnean Society
2025
Draft genome of the endemic alpine ground beetle Carabus (Platycarabus) depressus (Coleoptera: Carabidae) from long-read sequencing of a frozen archived specimen
G3: Genes, Genomes, Genetics
2025
Shedding light on the Chlorophytum comosum complex through phylogenomics and species distribution modeling
TAXON
2025
On the Neotropical spider genus Ciniflella Mello-Leitão, 1921 (Araneae: Zoropsidae, Tengellinae)
Zootaxa
2025
Historical introgression as a driver of diversification of diploid Picris (Compositae) in the Mediterranean Basin
The Plant Journal
2025
An ancient recombination desert is a speciation supergene in placental mammals
Nature
2025
Phylogenomics supports a new subfamily of paedomorphic net-winged beetles (Coleoptera: Lycidae) endemic to the Atlantic Forest biodiversity hotspot
Insect Systematics and Diversity
2025
The first complete mitochondrial genome of a Lethrus species (Coleoptera, Geotrupidae) with phylogenetic implications
ZooKeys
2025
Phylogenomics Of Boraginaceae and Boraginales Using Lineage-Specific and Angiosperms353 Loci
Systematic Botany
2025
Early colonization of New Caledonia by ultrasonic crickets from New Guinea (Orthoptera: Gryllidae: Eneopterinae): Historical biogeography and description of a new genus
Systematic Entomology
2025
Phylogenetic origin of dioecious Callicarpa (Lamiaceae) species endemic to the Ogasawara Islands revealed by chloroplast and nuclear whole genome analyses
Molecular Phylogenetics and Evolution
2025
Ancient polyploidization events influence the evolution of the ginseng family (Araliaceae)
Frontiers in Plant Science
2025
Phylogenomics of Lithospermum (Boraginaceae) based on genome skimming
Brittonia
2025
Unravelling the Web of Life: Incomplete Lineage Sorting and Hybridisation as Primary Mechanisms Over Polyploidisation in the Evolutionary Dynamics of Pear Species
Molecular Ecology Resources
2025
Genomically-selected antifungal Bacillaceae strains improve wheat yield and baking quality
Applied Microbiology and Biotechnology
2025
Evolutionary systematics of the Staphylininae rove beetles (Coleoptera: Staphylinidae) resolved by integration of phylogenomics, comparative morphology and historical biogeography
Systematic Entomology
2025
New insights into the phylogeny and infrageneric taxonomy of Saussurea based on hybrid capture phylogenomics (Hyb-Seq)
Plant Diversity
2025
Syntenic nuclear genes and morphology reveal unusual new climbing bamboo species of Melocalamus in the Gaoligong Mountains
TAXON
2025
Navigating phylogenetic conflict and evolutionary inference in plants with target-capture data
Australian Systematic Botany
2025
Phylogenomic Insights into the Evolution and Origin of Nematoda
Systematic Biology
2025
Nylanderia of the World, Part IV: Taxonomic contributions to the American Clade I of New World Nylanderia (Hymenoptera: Formicidae)
Zootaxa
2025
A shallow‐scale phylogenomics approach reveals repeated patterns of diversification among sympatric lineages of cryptic Neotropical aquatic beetles (Coleoptera: Noteridae)
Systematic Entomology
2025
Integrative taxonomy reveals inflated biodiversity in the European Temnothorax unifasciatus complex (Hymenoptera: Formicidae)
Zoologica Scripta
2025
Transposable elements create distinct genomic niches for effector evolution among Magnaporthe oryzae lineages
BMC Biology
2025
Exon Capture Museomics Deciphers the Nine-Banded Armadillo Species Complex and Identifies a New Species Endemic to the Guiana Shield
Systematic Biology
2025
Classification and biogeography of the weevil subfamily Entiminae (Coleoptera: Curculionidae) based on a comprehensive dated phylogeny
Zoological Journal of the Linnean Society
2025
Phylogenomics and a new classification of the tropical genus Heliconia L. (Monocots, Zingiberales, Heliconiaceae)
PhytoKeys
2025
Forget-me-not phylogenomics: Improving the resolution and taxonomy of a rapid island and mountain radiation in Aotearoa New Zealand (Myosotis; Boraginaceae)
Molecular Phylogenetics and Evolution
2025
Novel phylogenomic and biogeographic insights into Palaquium and tribe Isonandreae (Sapotaceae)
Molecular Phylogenetics and Evolution
2025
Exploring the potential of Angiosperms353 markers for species identification of Eastern Mediterranean orchids
Molecular Phylogenetics and Evolution
2024
Geogenomic Predictors of Genetree Heterogeneity Explain Phylogeographic and Introgression History: A Case Study in an Amazonian Bird (Thamnophilus aethiops)
Systematic Biology
2024
De novo assembly and annotation of Popillia japonica’s genome with initial clues to its potential as an invasive pest
BMC Genomics
2024
The phylogeny of ceutorhynchine weevils (Ceutorhynchinae, Curculionidae): Mitogenome data improve the resolution of tribal relationships
Systematic Entomology
2024
Orchidinae‐205: A new genome‐wide custom bait set for studying the evolution, systematics, and trade of terrestrial orchids
Molecular Ecology Resources
2024
Phylogenomics and biogeography of sawflies and woodwasps (Hymenoptera, Symphyta)
Molecular Phylogenetics and Evolution
2024
Geometric morphometrics casts light on phylogenetic relevance of cephalopod beak morphological
Journal of Morphology
2024
Phylogenomics of the psychoactive mushroom genus Psilocybe and evolution of the psilocybin biosynthetic gene cluster
Proceedings of the National Academy of Sciences
2024
“Picking up signals” in male genital morphospace and integrating phylogenomics to delimit Neotropical Nylanderia Emery species (Hymenoptera: Formicidae)
Insect Systematics and Diversity
2024
Phylogenomics of endemic Australian Ulopinae (Hemiptera: Cicadomorpha: Cicadellidae)
Invertebrate Systematics
2024
Plastid phylogenomics with broad taxon sampling provides insights into the generic delimitation of Paraphlomideae (Lamiaceae)
TAXON
2024
Phylogenomic conflict analyses of the plastid and mitochondrial genomes via deep genome skimming highlight their independent evolutionary histories: A case study in the cinquefoil genus Potentilla sensu lato (Potentilleae, Rosaceae)
Molecular Phylogenetics and Evolution
2024
2024 24th International Conference on Transparent Optical Networks (ICTON)
2024
Genome‐Wide Data Uncover Cryptic Diversity With Multiple Reticulation Events in the Balkan‐Anatolian Cardamine (Brassicaceae) Species Complex
Molecular Ecology
2024
From museum drawer to tree: Historical DNA phylogenomics clarifies the systematics of rare dung beetles (Coleoptera: Scarabaeinae) from museum collections
PLOS ONE
2024
Host association and intracellularity evolved multiple times independently in the Rickettsiales
Nature Communications
2024
Next‐generation bioinformatics: An ultrafast and user‐friendly tool for phylogenomic data exploration
Molecular Ecology Resources
2024
Phylogenomics and morphology of Celmisiinae (Asteraceae: Astereae): Taxonomic and evolutionary implications
Molecular Phylogenetics and Evolution
2024
Phylogeny and infrageneric classification of Clerodendrum (Lamiaceae)
Botanical Journal of the Linnean Society
2024
Artifactual Orthologs and the Need for Diligent Data Exploration in Complex Phylogenomic Datasets: A Museomic Case Study from the Andean Flora
Systematic Biology
2024
Tangled webs and spider‐flowers: Phylogenomics, biogeography, and seed morphology inform the evolutionary history of Cleomaceae
American Journal of Botany
2024
Genome and life-history evolution link bird diversification to the end-Cretaceous mass extinction
Science Advances
2024
Populating a Continent: Phylogenomics Reveal the Timing of Australian Frog Diversification
Systematic Biology
2024
AdvancingPyrusphylogeny: Deep genome skimming‐based inference coupled with paralogy analysis yields a robust phylogenetic backbone and an updated infrageneric classification of the pear genus (Maleae, Rosaceae)
TAXON
2024
Reassessment of the genetic basis of natural rifampin resistance in the genus Rickettsia
MicrobiologyOpen
2024
Lessons from assembling UCEs: A comparison of common methods and the case of Clavinomia (Halictidae)
Molecular Ecology Resources
2024
SEGUL: Ultrafast, memory‐efficient and mobile‐friendly software for manipulating and summarizing phylogenomic datasets
Molecular Ecology Resources
2024
Identifying the multiple drivers of cactus diversification
Nature Communications
2024
Specific amino acid changes correlate with pathogenic flavobacteria
Genome
2024
A Phylogenomic Analysis of Genipa (Rubiaceae) Using Target Sequence Capture Data
Systematic Botany
2024
Phylogenomics of the major lineages of Bembidion and related ground beetles (Coleoptera: Carabidae: Bembidiini)
Insect Systematics and Diversity
2024
Phylogenomics and the rise of the angiosperms
Nature
2024
A snow-dwelling tropical butterfly? An unprecedented discovery of a new genus of the Pedaliodes clade in an extreme, high-altitude Andean environment (Lepidoptera: Nymphalidae: Satyrinae)
Zoological Journal of the Linnean Society
2024
Evolutionary bursts drive morphological novelty in the world’s largest skinks
Current Biology
2024
Mitochondrial genome fragmentation is correlated with increased rates of molecular evolution
PLOS Genetics
2024
Large‐scale genomic data reveal the phylogeny and evolution of owlet moths (Noctuoidea)
Cladistics
2024
Seeking the identity of an enigmatic moss by embracing phylogenomics
Journal of Systematics and Evolution
2024
Convergent genomic signatures associated with vertebrate viviparity
BMC Biology
2024
Differential Conservation and Loss of Chicken Repeat 1 (CR1) Retrotransposons in Squamates Reveal Lineage-Specific Genome Dynamics Across Reptiles
Genome Biology and Evolution
2024
Plastid genome and its phylogenetic implications of Asiatic Spiraea (Rosaceae)
BMC Plant Biology
2024
Mitochondrial phylogenomics supports a Carboniferous origin of Xenonomia
The European Zoological Journal
2024
Comparative genomic analysis provides insights into the genetic diversity and pathogenicity of the genus Brucella
Frontiers in Microbiology
2024
Phylogenomics and divergence pattern of Polygonatum (Asparagaceae: Polygonateae) in the north temperate region
Molecular Phylogenetics and Evolution
2024
The complete chloroplast genome and phylogenetic analysis of Rubus sumatranus Miq 1861 (Roseaceae)
Mitochondrial DNA Part B
2024
Reduced evolutionary constraint accompanies ongoing radiation in deep-sea anglerfishes
Nature Ecology & Evolution
2024
Phylogeny, biogeography and ecological diversification of New Caledonian palms (Arecaceae)
Annals of Botany
2024
Whole-genome-based taxonomy as the most accurate approach to identify Flavobacterium species
FEMS Microbiology Letters
2024
Mitogenomes do not substantially improve phylogenetic resolution in a young non-model adaptive radiation of freshwater gastropods
BMC Ecology and Evolution
2024
Discovery of a new tarantula species from the Madrean Sky Islands and the first documented instance of syntopy between two montane endemics (Araneae, Theraphosidae, Aphonopelma): a case of prior mistaken identity
ZooKeys
2024
Cryptic or underworked? Taxonomic revision of the Antistrophus rufus species complex (Cynipoidea, Aulacideini)
Journal of Hymenoptera Research
2024
The evolution of ephemeral flora in Xinjiang, China: insights from plastid phylogenomic analyses of Brassicaceae
BMC Plant Biology
2024
Truly the best of both worlds: Merging lineage‐specific and universal probe kits to maximize phylogenomic inference
Applications in Plant Sciences
2024
Insights into the phylogeny of longhorn beetles from phylogenomic data
Zoological Journal of the Linnean Society
2024
The origin and maintenance of supergenes contributing to ecological adaptation in Atlantic herring
Nature Communications
2024
2024 24th International Conference on Transparent Optical Networks (ICTON)
2024
Parvodontia relampaga sp. nov.: A Cystostereaceae fungal pathogen that is the causal agent of relampago blight of woody plants in Florida, USA
Fungal Biology
2024
Phylogenomics of Phengodidae (Coleoptera: Elateroidea): towards a natural classification of a bioluminescent and paedomorphic beetle lineage, with recognition of a new subfamily
Zoological Journal of the Linnean Society
2024
Novel evolutionary insights on the interactions of the Holosporales (Alphaproteobacteria) with eukaryotic hosts from comparative genomics
Environmental Microbiology
2024
Phylogenetic insights into the Salicaceae: The evolution of willows and beyond
Molecular Phylogenetics and Evolution
2024
The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps
Cladistics
2024
How to cross the desert if you are small and need mountains? Out‐of‐Ethiopia dispersal in Afromontane shrews
Journal of Biogeography
2024
Phylogenomic analysis and molecular identification of true fruit flies
Frontiers in Genetics
2024
Diversity and evolution of the vertebrate chemoreceptor gene repertoire
Nature Communications
2024
Phylogenomic reconstruction illuminates the evolutionary history of freshwater to marine transition in the subfamily Haloveliinae (Hemiptera: Heteroptera: Veliidae)
Systematic Entomology
2024
Genome sequence of Ehrlichia muris from Ixodes ricinus collected in Italy on a migratory bird provides epidemiological and evolutionary insights
Ticks and Tick-borne Diseases
2024
A new nuclear phylogeny of the tea family (Theaceae) unravels rapid radiations in genus Camellia
Molecular Phylogenetics and Evolution
2024
Boring systematics: A genome skimmed phylogeny of ctenostome bryozoans and their endolithic family Penetrantiidae with the description of one new species
Ecology and Evolution
2024
Species delimitation in Xanthium sect. Acanthoxanthium (Heliantheae, Asteraceae) and the neglected species Xanthium argenteum
TAXON
2024
OrthoMaM v12: a database of curated single-copy ortholog alignments and trees to study mammalian evolutionary genomics
Nucleic Acids Research
2024
Synchronized Expansion and Contraction of Olfactory, Vomeronasal, and Taste Receptor Gene Families in Hystricomorph Rodents
Molecular Biology and Evolution
2024
Digging into boring bryozoans: new characters and new species of Immergentiidae
Organisms Diversity & Evolution
2024
Detection of Anaplasma and Ehrlichia bacteria in humans, wildlife, and ticks in the Amazon rainforest
Nature Communications
2024
Ecological diversification preceded geographical expansion during the evolutionary radiation of Cataglyphis desert ants
iScience
2024
Phylogeny and evolution of hemipteran insects based on expanded genomic and transcriptomic data
BMC Biology
2024
Genomic incongruence accompanies the evolution of flower symmetry in Eudicots: a case study in the poppy family (Papaveraceae, Ranunculales)
Frontiers in Plant Science
2024
Current status of global conservation and characterisation of wild and cultivated Brassicaceae genetic resources
GigaScience
2024
Characterization of Aeromonas salmonicida mesophilic isolates from Alberta (Canada) allows the development of a more sensitive Dictyostelium discoideum predation test
FEMS Microbiology Letters
2024
A Multiomics Perspective on Plant Cell Wall-Degrading Enzyme Production: Insights from the Unexploited Fungus Trichoderma erinaceum
Journal of Fungi
2023
A nuclear target sequence capture probe set for phylogeny reconstruction of the charismatic plant family Bignoniaceae
Frontiers in Genetics
2023
Biosynthetic gene profiling and genomic potential of the novel photosynthetic marine bacterium Roseibaca domitiana
Frontiers in Microbiology
2023
A genome‐wide phylogeny and the diversification of genus Liriomyza (Diptera: Agromyzidae) inferred from anchored phylogenomics
Systematic Entomology
2023
Chromosome-Aware Phylogenomics of Assassin Bugs (Hemiptera: Reduvioidea) Elucidates Ancient Gene Conflict
Molecular Biology and Evolution
2023
Four species in one: taxonomic revision of the Eirmocides helenita (Semper, 1879) complex (Lepidoptera: Lycaenidae) from Australia and New Guinea
Austral Entomology
2023
Phylotranscriptomics supports numerous polyploidization events and phylogenetic relationships in Nicotiana
Frontiers in Plant Science
2023
Antimicrobial resistance genes and associated mobile genetic elements in Lactobacillales from various sources
Frontiers in Microbiology
2023
Environmental Biofilms from an Urban Community in Salvador, Brazil, Shelter Previously Uncharacterized Saprophytic Leptospira
Microbial Ecology
2023
Multilocus phylogeny and historical biogeography of theCrematogaster inflata-group (Hymenoptera: Formicidae) in South-East Asia
Zoological Journal of the Linnean Society
2023
A new genus in the diverse Andean Pedaliodes complex uncovered using target enrichment (Lepidoptera, Nymphalidae)
Systematic Entomology
2023
Genomic insights into the coupling of aChlorella-like microeukaryote and sulfur bacteria in the chemocline of permanently stratified Lake Cadagno
The ISME Journal
2023
Phylogenomic Analysis of the Parrots of the World Distinguishes Artifactual from Biological Sources of Gene Tree Discordance
Systematic Biology
2023
Is it inappropriate to ask for your age? Evaluating parameter impact on tree dating in a challenging clade (Macroscelidea)
Molecular Phylogenetics and Evolution
2023
Diversification and Biogeography of North American Thistles (Cirsium: Carduoideae: Compositae): Drivers of a Rapid Continent-Wide Radiation
International Journal of Plant Sciences
2023
Species diversity and molecular characterization of Alternaria section Alternaria isolates collected mainly from cereal crops in Canada
Frontiers in Microbiology
2023
A k-mer-Based Approach for Phylogenetic Classification of Taxa in Environmental Genomic Data
Systematic Biology
2023
Genomic analysis of the initial dissemination of carbapenem-resistant Klebsiella pneumoniae clones in a tertiary hospital
Microbial Genomics
2023
Nightmare or delight: Taxonomic circumscription meets reticulate evolution in the phylogenomic era
Molecular Phylogenetics and Evolution
2023
Ancient Rapid Radiation Explains Most Conflicts Among Gene Trees and Well-Supported Phylogenomic Trees of Nostocalean Cyanobacteria
Systematic Biology
2023
Rapid radiation of ant parasitic butterflies during the Miocene aridification of Africa
Ecology and Evolution
2023
Interspecific gene flow obscures phylogenetic relationships in an important insect pest species complex
Molecular Phylogenetics and Evolution
2023
A phylogeny of Cereus (Cactaceae) and the placement and description of two new species
TAXON
2023
Beetle evolution illuminates the geological history of the World's most diverse tropical archipelago
Ecography
2023
Tapping Culture Collections for Fungal Endophytes: First Genome Assemblies for Three Genera and Five Species in theAscomycota
Genome Biology and Evolution
2023
Parallel evolution and cryptic diversification in a common and widespread Amazonian tree, Protium subserratum
Molecular Ecology
2023
Changes in parrot diversity after human arrival to the Caribbean
Proceedings of the National Academy of Sciences
2023
Resolving Marine–Freshwater Transitions by Diatoms Through a Fog of Gene Tree Discordance
Systematic Biology
2023
Investigating the phylogenetic history of toxin tolerance in mushroom‐feeding Drosophila
Ecology and Evolution
2023
Diversification processes in Gerp's mouse lemur demonstrate the importance of rivers and altitude as biogeographic barriers in Madagascar's humid rainforests
Ecology and Evolution
2023
Evolution of hygrophytic plant species in the Anatolia–Caucasus region: insights from phylogenomic analyses ofCardamineperennials
Annals of Botany
2023
Phylogenomic insights into the polyphyletic nature of Altai falcons within eastern sakers (Falco cherrug) and the origins of gyrfalcons (Falco rusticolus)
Scientific Reports
2023
One in, one out: Generic circumscription within subtribe Manilkarinae (Sapotaceae)
TAXON
2023
Phylogeny and morphological evolution of the Neotropical genus Cuspidaria (Bignonieae, Bignoniaceae): Combining high‐throughput sequencing and targeted loci data
TAXON
2023
A genomic timescale for placental mammal evolution
Science
2023
The State of Squamate Genomics: Past, Present, and Future of Genome Research in the Most Speciose Terrestrial Vertebrate Order
Genes
2023
A long-awaited taxogenomic investigation of the family Halomonadaceae
Frontiers in Microbiology
2023
Phylotranscriptomics interrogation uncovers a complex evolutionary history for the planarian genus Dugesia (Platyhelminthes, Tricladida) in the Western Mediterranean
Molecular Phylogenetics and Evolution
2023
Untangling the evolution of soldier beetles (Coleoptera: Cantharidae) and the evaluation of the morphological phylogenetic signal in a soft‐bodied elateroid lineage
Cladistics
2023
Dynamic evolution of size and colour in the highly specializedZodarionant-eating spiders
Proceedings of the Royal Society B: Biological Sciences
2023
Balkan‐Anatolian biogeographic links and the evolutionary significance of Anatolian mountains, as evidenced by Cardamine (Brassicaceae)
TAXON
2023
Ultraconserved elements resolve the phylogeny and corroborate patterns of molecular rate variation in herons (Aves: Ardeidae)
Ornithology
2023
Target capture sequencing for phylogenomic and population studies in the Southeast Asian genusPalaquium(Sapotaceae)
Botanical Journal of the Linnean Society
2023
Next-generation sequencing data show rapid radiation and several long-distance dispersal events in early Costaceae
Molecular Phylogenetics and Evolution
2023
Evidence for a single, ancient origin of a genus-wide alternative life history strategy
Science Advances
2023
Ancient hybridization inCurcuma(Zingiberaceae)—Accelerator or brake in lineage diversifications?
The Plant Journal
2023
Phylogenetic Relationships and Next-Generation Barcodes in the Genus Torreya Reveal a High Proportion of Misidentified Cultivated Plants
International Journal of Molecular Sciences
2023
First molecular phylogeny and species delimitation of West PalaearcticPollenia(Diptera: Polleniidae)
Zoological Journal of the Linnean Society
2023
Convergent evolution of the sensory pits in and within flatworms
BMC Biology
2023
Proterozoic Acquisition of Archaeal Genes for Extracellular Electron Transfer: A Metabolic Adaptation of Aerobic Ammonia-Oxidizing Bacteria to Oxygen Limitation
Molecular Biology and Evolution
2023
The evolution of white-tailed jackrabbit camouflage in response to past and future seasonal climates
Science
2023
Malus includes Docynia (Maleae, Rosaceae): evidence from phylogenomics and morphology
PhytoKeys
2023
Horizontal transfer of therfbcluster inLeptospirais a genetic determinant of serovar identity
Life Science Alliance
2023
Range-wide population genomics of common seadragons shows secondary contact over a former barrier and insights on illegal capture
BMC Biology
2023
A three-genome ultraconserved element phylogeny of cryptophytes
Protist
2023
Postglacial adaptations enabled colonization and quasi-clonal dispersal of ammonia-oxidizing archaea in modern European large lakes
Science Advances
2023
Phylogenetic relationships, hybridization events, and drivers of diversification of East Asian wild grapes as revealed by phylogenomic analyses
Journal of Systematics and Evolution
2023
Genomic Surveillance of Salmonella from the Comunitat Valenciana (Spain)
Antibiotics
2023
Unravelling phylogenetic relationships of the tribe Cereeae using target enrichment sequencing
Annals of Botany
2023
Pangolin Genomes Offer Key Insights and Resources for the World’s Most Trafficked Wild Mammals
Molecular Biology and Evolution
2023
Phylogenomics sheds new light on the drivers behind a long‐lasting systematic riddle: the figwort family Scrophulariaceae
New Phytologist
2023
To design, or not to design? Comparison of beetle ultraconserved element probe set utility based on phylogenetic distance, breadth, and method of probe design
Insect Systematics and Diversity
2023
A revision of Scipopus Enderlein including the subgenera Scipopus s. str., Phaeopterina Frey and Parascipopus subgen. nov. (Diptera, Micropezidae, Taeniapterinae)
European Journal of Taxonomy
2023
Phylogenomic analyses support a new infrageneric classification of Pourthiaea (Maleae, Rosaceae) using multiple inference methods and extensive taxon sampling
TAXON
2023
The evolution of the hypotetraploid Catolobus pendulus genome – the poorly known sister species of Capsella
Frontiers in Plant Science
2023
Revisiting phylogeny, systematics, and biogeography of a Pleistocene radiation
American Journal of Botany
2023
Ancient and Nonuniform Loss of Olfactory Receptor Expression Renders the Shark Nose a De Facto Vomeronasal Organ
Molecular Biology and Evolution
2023
UCE phylogenomics, biogeography, and classification of long-horned bees (Hymenoptera: Apidae: Eucerini), with insights on using specimens with extremely degraded DNA
Insect Systematics and Diversity
2023
The Artefactual Branch Effect and Phylogenetic Conflict: Species Delimitation with Gene Flow in Mangrove Pit Vipers (Trimeresurus purpureomaculatus-erythrurus Complex)
Systematic Biology
2023
Tracking the Emergence and Dissemination of a bla NDM-23 Gene in a Multidrug Resistance Plasmid of Klebsiella pneumoniae
Microbiology Spectrum
2023
Combining target enrichment and Sanger sequencing data to clarify the systematics of the diverse Neotropical butterfly subtribe Euptychiina (Nymphalidae, Satyrinae)
Systematic Entomology
2023
First chromosome scale genomes of ithomiine butterflies (Nymphalidae: Ithomiini): Comparative models for mimicry genetic studies
Molecular Ecology Resources
2023
Monnina (Polygalaceae), a New World monophyletic genus full of contrasts
Botanical Journal of the Linnean Society
2023
Target enrichment of long open reading frames and ultraconserved elements to link microevolution and macroevolution in non‐model organisms
Molecular Ecology Resources
2023
Phylogenetic relationships in the Eugongylini (Squamata: Scincidae): generic limits and biogeography
Australian Journal of Zoology
2023
Phylogeny of the flea beetles (Galerucinae: Alticini) and the position of Aulacothorax elucidated through anchored phylogenomics (Coleoptera: Chrysomelidae: Alticini)
Systematic Entomology
2023
Speciation across the Earth driven by global cooling in terrestrial orchids
Proceedings of the National Academy of Sciences
2023
Phylogenomics of Lasiodoriforms: reclassification of the South American genus Vitalius Lucas, Silva and Bertani and allied genera (Araneae: Theraphosidae)
Frontiers in Ecology and Evolution
2023
Transcriptomic analysis of the Brazilian blind characid, Stygichthys typhlops, reveals convergent selection with Astyanax mexicanus and other cavefishes
Frontiers in Ecology and Evolution
2023
The genome of Bacillus tequilensis EA-CB0015 sheds light into its epiphytic lifestyle and potential as a biocontrol agent
Frontiers in Microbiology
2023
A phylogenomic approach to species delimitation in the mango fruit fly (Bactrocera frauenfeldi) complex: A new synonym of an important pest species with variable morphotypes (Diptera: Tephritidae)
Systematic Entomology
2023
Plastome evolution and phylogenomic insights into the evolution of Lysimachia (Primulaceae: Myrsinoideae)
BMC Plant Biology
2023
Methods in Molecular Biology
2023
Diversity and relationships between Andean shrubland puna butterflies in the genus Punargentus (Lepidoptera: Nymphalidae: Satyrinae)
European Journal of Entomology
2023
One to host them all: genomics of the diverse bacterial endosymbionts of the spider Oedothorax gibbosus
Microbial Genomics
2023
Key innovations and the diversification of Hymenoptera
Nature Communications
2023
Which molecular marker is better? Comparative analyses of COI and ITS2 in molecular identification of Trichogramma (Hymenoptera: Trichogrammatidae)
BioControl
2023
Langbiangia, a new genus of Gesneriaceae endemic to Langbiang Plateau, southern Vietnam and a taxonomic endeavor to achieve key targets of the post-2020 global biodiversity framework
PLOS ONE
2023
Phylogenomic analyses of Sapindales support new family relationships, rapid Mid-Cretaceous Hothouse diversification, and heterogeneous histories of gene duplication
Frontiers in Plant Science
2023
Phylogenetic challenges in a recently diversified and polyploid-rich Alyssum (Brassicaceae) lineage: low divergence, reticulation, and parallel polyploid speciation
Evolution
2023
Cooperative motility, force generation and mechanosensing in a foraging non-photosynthetic diatom
Open Biology
2023
A target enrichment probe set for resolving phylogenetic relationships in the coffee family, Rubiaceae
Applications in Plant Sciences
2023
Sequence capture: Obsolete or irreplaceable? A thorough validation across phylogenetic distances and its applicability to hybrids and allopolyploids
Molecular Ecology Resources
2023
Two novel Bartonella (sub)species isolated from edible dormice (Glis glis): hints of cultivation stress-induced genomic changes
Frontiers in Microbiology
2023
Phylogenomic analyses using a new 1013-gene Vitaceae bait-set support major groups of North American Vitis
Molecular Phylogenetics and Evolution
2022
Life-history traits drive spatial genetic structuring in Dinaric cave spiders
Frontiers in Ecology and Evolution
2022
New Insights Into the Relationships Within Subtribe Scorzonerinae (Cichorieae, Asteraceae) Using Hybrid Capture Phylogenomics (Hyb-Seq)
Frontiers in Plant Science
2022
A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life
Systematic Biology
2022
A global phylogenomic and metabolic reconstruction of the large intestine bacterial community of domesticated cattle
Microbiome
2022
Molecular Evolution across Mouse Spermatogenesis
Molecular Biology and Evolution
2022
Anthurium caldasii: a new species of Araceae from Colombia and its phylogenetic relationships with other black-spathed Anthurium species
Brittonia
2022
Phylogeny, evolution, and classification of the ant genus Lasius, the tribe Lasiini and the subfamily Formicinae (Hymenoptera: Formicidae)
Systematic Entomology
2022
Plastid phylogenomics of tribe Perseeae (Lauraceae) yields insights into the evolution of East Asian subtropical evergreen broad-leaved forests
BMC Plant Biology
2022
Hybridization and genome duplication for early evolutionary success in the Asian Palmate group of Araliaceae
Journal of Systematics and Evolution
2022
Population genetics, demographic and evolutionary history of the Dudley’s lousewort (Pedicularis dudleyi), a rare redwood forest specialist
Conservation Genetics
2022
Conservation genomics of federally endangered Texella harvester species (Arachnida, Opiliones, Phalangodidae) from cave and karst habitats of central Texas
Conservation Genetics
2022
BioKIT: a versatile toolkit for processing and analyzing diverse types of sequence data
Genetics
2022
Phylogeny, biogeography and diversification of the mining bee family Andrenidae
Systematic Entomology
2022
Phylogenetic Relationships Within the Hyper-Diverse Genus Eugenia (Myrtaceae: Myrteae) Based on Target Enrichment Sequencing
Frontiers in Plant Science
2022
An Epistatic Network Describes oppA and glgB as Relevant Genes for Mycobacterium tuberculosis
Frontiers in Molecular Biosciences
2022
Phylogenomic Delimitation of Morphologically Cryptic Species in Globetrotting Nylanderia (Hymenoptera: Formicidae) Species Complexes
Insect Systematics and Diversity
2022
Phylogenetic and ecological reevaluation of the order Onygenales
Fungal Diversity
2022
Ancient proteins resolve controversy over the identity ofGenyorniseggshell
Proceedings of the National Academy of Sciences
2022
Phylogeny of Globba section Nudae and taxonomic revision of the new Globba subsection Pelecantherae
Plant Systematics and Evolution
2022
Spatial phylogenetic patterns in the North American moss flora are shaped by history and climate
Journal of Biogeography
2022
Radiation and hybridization underpin the spread of the fire ant social supergene
Proceedings of the National Academy of Sciences
2022
SNP-based phylogenomic inference in Holarctic ground squirrels (Urocitellus)
Molecular Phylogenetics and Evolution
2022
Speciation in Nearctic oak gall wasps is frequently correlated with changes in host plant, host organ, or both
Evolution
2022
Complete mitochondrial genomes and updated divergence time of the two freshwater clupeids endemic to Lake Tanganyika (Africa) suggest intralacustrine speciation
BMC Ecology and Evolution
2022
Fascinating Life Sciences
2022
Mitogenomic data elucidate the phylogeny and evolution of life strategies in Dermestidae (Coleoptera)
Systematic Entomology
2022
Delimiting the cryptic diversity and host preferences of Sycophila parasitoid wasps associated with oak galls using phylogenomic data
Molecular Ecology
2022
Biogeography and eye size evolution of the ogre-faced spiders
Scientific Reports
2022
Untying Gordian knots: unraveling reticulate polyploid plant evolution by genomic data using the large Ranunculus auricomus species complex
New Phytologist
2022
First Phylogenomic Assessment of the Amphitropical New World Ant Genus Dorymyrmex (Hymenoptera: Formicidae), a Longstanding Taxonomic Puzzle
Insect Systematics and Diversity
2022
Peeling back the layers: First phylogenomic insights into the Ledebouriinae (Scilloideae, Asparagaceae)
Molecular Phylogenetics and Evolution
2022
Lifestyle Transitions in Fusarioid Fungi are Frequent and Lack Clear Genomic Signatures
Molecular Biology and Evolution
2022
Discovery and characterization of sweetpotato’s closest tetraploid relative
New Phytologist
2022
Effectiveness of Two Universal Angiosperm Probe Sets Tested In Silico for Caryophyllids Taxa with Emphasis on Cacti Species
Genes
2022
Whole genome sequencing and phylogenomic analysis show support for the splitting of genusPythium
Mycologia
2022
An NGS-Based Phylogeny of Orthotricheae (Orthotrichaceae, Bryophyta) With the Proposal of the New Genus Rehubryum From Zealandia
Frontiers in Plant Science
2022
Phenotypic Variability and Genetic Diversity of the Pathogenic Fungus Macrophomina phaseolina from Several Hosts and Host Specialization in Strawberry
Current Microbiology
2022
Using natural history to guide supervised machine learning for cryptic species delimitation with genetic data
Frontiers in Zoology
2022
The Galapagos giant tortoise Chelonoidis phantasticus is not extinct
Communications Biology
2022
Plastome structure, phylogenomics, and divergence times of tribe Cinnamomeae (Lauraceae)
BMC Genomics
2022
Anchored phylogenomics and a revised classification of the planidial larva clade of jewel wasps (Hymenoptera: Chalcidoidea)
Systematic Entomology
2022
Evolutionary Déjà Vu: Extreme Convergence in an Ant-Plant Association
SSRN Electronic Journal
2022
Every hooked beak is maintained by a prey: Ecological signal in cephalopod beak shape
Functional Ecology
2022
Phylogenomic conflict analyses in the apple genus Malus s.l. reveal widespread hybridization and allopolyploidy driving diversification, with insights into the complex biogeographic history in the Northern Hemisphere
Journal of Integrative Plant Biology
2022
Genomic resolution of cryptic species diversity in chipmunks
Evolution
2022
Plastid phylogenomics of the Sansevieria Clade of Dracaena (Asparagaceae) resolves a recent radiation
Molecular Phylogenetics and Evolution
2022
Phylotranscriptomics of Theaceae: generic-level relationships, reticulation and whole-genome duplication
Annals of Botany
2022
The RadOrgMiner pipeline: Automated genotyping of organellar loci from RADseq data
Methods in Ecology and Evolution
2022
Benefits of alignment quality‐control processing steps and an Angiosperms353 phylogenomics pipeline applied to the Celastrales
Cladistics
2022
Target capture data resolve recalcitrant relationships in the coffee family (Rubioideae, Rubiaceae)
Frontiers in Plant Science
2022
Phylogenomics of the Aphididae: Deep relationships between subfamilies clouded by gene tree discordance, introgression and the gene tree anomaly zone
Systematic Entomology
2022
A diversification relay race from Caribbean-Mesoamerica to the Andes: historical biogeography of Xylophanes hawkmoths
Proceedings of the Royal Society B: Biological Sciences
2022
Phylogeny of gracillariid leaf‐mining moths: evolution of larval behaviour inferred from phylogenomic and Sanger data
Cladistics
2022
Phylogenomics and Fossil Data Inform the Systematics and Geographic Range Evolution of a Diverse Neotropical Ant Lineage
Insect Systematics and Diversity
2022
Pantropical diversification of padauk trees and relatives was influenced by biome‐switching and long‐distance dispersal
Journal of Biogeography
2022
A 638‐gene phylogeny supports the recognition of twice as many species in the Malagasy endemic genusCapurodendron(Sapotaceae)
TAXON
2022
Afro-alpine flagships revisited II: elucidating the evolutionary relationships and species boundaries in the giant senecios (Dendrosenecio, Asteraceae)
Alpine Botany
2022
Comparative Chloroplast Genomes of Nicotiana Species (Solanaceae): Insights Into the Genetic Variation, Phylogenetic Relationship, and Polyploid Speciation
Frontiers in Plant Science
2022
Complete mitogenomes reveal limited genetic variability in the garden dormouse Eliomys quercinus of the Iberian Peninsula
Animal Biodiversity and Conservation
2022
A remarkable troglomorphic ant, Yavnella laventa sp. nov. (Hymenoptera: Formicidae: Leptanillinae), identified as the first known worker of Yavnella Kugler by phylogenomic inference
Invertebrate Systematics
2022
Phylogenomic systematics of the spotted skunks (Carnivora, Mephitidae, Spilogale): Additional species diversity and Pleistocene climate change as a major driver of diversification
Molecular Phylogenetics and Evolution
2022
Comparative Genomic Insights into the Evolution of Halobacteria -Associated “ Candidatus Nanohaloarchaeota”
mSystems
2022
Mahonia vs. Berberis Unloaded: Generic Delimitation and Infrafamilial Classification of Berberidaceae Based on Plastid Phylogenomics
Frontiers in Plant Science
2022
Island Biogeography Revisited: Museomics Reveals Affinities of Shelf Island Birds Determined by Bathymetry and Paleo-Rivers, Not by Distance to Mainland
Molecular Biology and Evolution
2022
New molecular markers for distinguishing the main phylogenetic lineages within Alternaria section Alternaria
Canadian Journal of Plant Pathology
2022
Neotropical niche evolution of Otoba trees in the context of global biogeography of the nutmeg family
Journal of Biogeography
2022
A Bird’s Eye View of the Systematics of Convolvulaceae: Novel Insights From Nuclear Genomic Data
Frontiers in Plant Science
2022
Phylogenomic and morphological evidence reveal a new species of spider lily, Lycoris longifolia (Amaryllidaceae) from China
PhytoKeys
2021
Testing the Utility of Alternative Metrics of Branch Support to Address the Ancient Evolutionary Radiation of Tunas, Stromateoids, and Allies (Teleostei: Pelagiaria)
Systematic Biology
2021
HyRAD-X Exome Capture Museomics Unravels Giant Ground Beetle Evolution
Genome Biology and Evolution
2021
Plastome variation and phylogeny of Taxillus (Loranthaceae)
PLOS ONE
2021
A nuclear phylogenomic study of the angiosperm order Myrtales, exploring the potential and limitations of the universal Angiosperms353 probe set
American Journal of Botany
2021
Phylogeny of drepanosiphine aphids sensu lato (Hemiptera, Aphidoidea) inferred from molecular and morphological data
Current Zoology
2021
Allele Sorting as a Novel Approach to Resolving the Origin of Allotetraploids Using Hyb-Seq Data: A Case Study of the Balkan Mountain Endemic Cardamine barbaraeoides
Frontiers in Plant Science
2021
Comprehensive phylogeny of Myrmecocystus honey ants highlights cryptic diversity and infers evolution during aridification of the American Southwest
Molecular Phylogenetics and Evolution
2021
Molecular Systematics of the Firefly Genus Luciola (Coleoptera: Lampyridae: Luciolinae) with the Description of a New Species from Singapore
Animals
2021
The limits of Quediini at last (Staphylinidae: Staphylininae): a rove beetle mega‐radiation resolved by comprehensive sampling and anchored phylogenomics
Systematic Entomology
2021
On the Species Delimitation of the Maddenia Group of Prunus (Rosaceae): Evidence From Plastome and Nuclear Sequences and Morphology
Frontiers in Plant Science
2021
A robust phylogenomic framework for the calamoid palms
Molecular Phylogenetics and Evolution
2021
Anchored Phylogenomics, Evolution and Systematics of Elateridae: Are All Bioluminescent Elateroidea Derived Click Beetles?
Biology
2021
Rare and widespread: integrating Bayesian MCMC approaches, Sanger sequencing and Hyb‐Seq phylogenomics to reconstruct the origin of the enigmatic Rand Flora genus Camptoloma
American Journal of Botany
2021
The widespread presence of a family of fish virulence plasmids in Vibrio vulnificus stresses its relevance as a zoonotic pathogen linked to fish farms
Emerging Microbes & Infections
2021
Molecular Clocks and Archeogenomics of a Late Period Egyptian Date Palm Leaf Reveal Introgression from Wild Relatives and Add Timestamps on the Domestication
Molecular Biology and Evolution
2021
Partitioned Gene-Tree Analyses and Gene-Based Topology Testing Help Resolve Incongruence in a Phylogenomic Study of Host-Specialist Bees (Apidae: Eucerinae)
Molecular Biology and Evolution
2021
Ultra‐Conserved Elements and morphology reciprocally illuminate conflicting phylogenetic hypotheses in Chalcididae (Hymenoptera, Chalcidoidea)
Cladistics
2021
First Record of a Polystome from Alligator Snapping Turtle, Macrochelys temminckii (Cryptodira: Chelydridae) or Mississippi; with Comments on “Neopolystoma orbiculare (Stunkard, 1916)” and Its Junior Subjective Synonyms
Journal of Parasitology
2021
A new classification of Cyperaceae (Poales) supported by phylogenomic data
Journal of Systematics and Evolution
2021
Synonymisation of the male-based ant genus Phaulomyrma (Hymenoptera : Formicidae) with Leptanilla based upon Bayesian total-evidence phylogenetic inference
Invertebrate Systematics
2021
Precise Species Identification for Acinetobacter: a Genome-Based Study with Description of Two Novel Acinetobacter Species
mSystems
2021
Cytological Study of <i>Begonia</i> Sect. <i>Baryandra</i> (Begoniaceae)
CYTOLOGIA
2021
Targeted sequencing supports morphology and embryo features in resolving the classification of Cyperaceae tribe Fuireneae s.l.
Journal of Systematics and Evolution
2021
BUSCO: Assessing Genomic Data Quality and Beyond
Current Protocols
2021
Eusociality Shapes Convergent Patterns of Molecular Evolution across Mitochondrial Genomes of Snapping Shrimps
Molecular Biology and Evolution
2021
Genome-Based Taxonomy of Brevundimonas with Reporting Brevundimonas huaxiensis sp. nov.
Microbiology Spectrum
2021
Beyond Drosophila: resolving the rapid radiation of schizophoran flies with phylotranscriptomics
BMC Biology
2021
The Legacy of Recurrent Introgression during the Radiation of Hares
Systematic Biology
2021
Relative performance of customized and universal probe sets in target enrichment: A case study in subtribe Malinae
Applications in Plant Sciences
2021
Combining molecular datasets with strongly heterogeneous taxon coverage enlightens the peculiar biogeographic history of stoneflies (Insecta: Plecoptera)
Systematic Entomology
2021
A comprehensive phylogenomic study of the monocot order Commelinales, with a new classification of Commelinaceae
American Journal of Botany
2021
Phylogeny, origin, and dispersal of Dubyaea (Asteraceae) based on Hyb-Seq data
Molecular Phylogenetics and Evolution
2021
Joint effect of phylogenetic relatedness and trait selection on the elevational distribution of Rhododendron species
Journal of Systematics and Evolution
2021
Resolving species boundaries in a recent radiation with the Angiosperms353 probe set: the Lomatium packardiae/L. anomalum clade of the L. triternatum (Apiaceae) complex
American Journal of Botany
2021
PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data
Bioinformatics
2021
Exploring systematic biases, rooting methods and morphological evidence to unravel the evolutionary history of the genus Ficus (Moraceae)
Cladistics
2021
Phylogenomic species delimitation in the ants of the Temnothorax salvini group (Hymenoptera: Formicidae): an integrative approach
Systematic Entomology
2021
MetaHiC phage-bacteria infection network reveals active cycling phages of the healthy human gut
eLife
2021
New genetic markers for Sapotaceae phylogenomics: More than 600 nuclear genes applicable from family to population levels
Molecular Phylogenetics and Evolution
2021
An integrative monograph of Carex section Schoenoxiphium (Cyperaceae)
PeerJ
2021
Phylogeographic analysis delimits three evolutionary significant units of least chipmunks in North America and identifies unique genetic diversity within the imperiled Peñasco population
Ecology and Evolution
2021
Phylogenomics of Gesneriaceae using targeted capture of nuclear genes
Molecular Phylogenetics and Evolution
2021
Whole‐genome single nucleotide polymorphism and mating compatibility studies reveal the presence of distinct species in sub‐Saharan Africa Bemisia tabaci whiteflies
Insect Science
2021
Phylogenomics of Monitor Lizards and the Role of Competition in Dictating Body Size Disparity
Systematic Biology
2021
Phylogenomics and evolutionary history of Oreobates (Anura: Craugastoridae) Neotropical frogs along elevational gradients
Molecular Phylogenetics and Evolution
2021
Accurate large-scale phylogeny-aware alignment using BAli-Phy
Bioinformatics
2021
Integrative phylogenomics reveals a Permian origin of Adephaga beetles
Systematic Entomology
2021
Adding leaves to the Lepidoptera tree: capturing hundreds of nuclear genes from old museum specimens
Systematic Entomology
2021
Capturing single‐copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in Vitaceae
Journal of Systematics and Evolution
2021
Resolving Recalcitrant Clades in the Pantropical Ochnaceae: Insights From Comparative Phylogenomics of Plastome and Nuclear Genomic Data Derived From Targeted Sequencing
Frontiers in Plant Science
2021
Phylogenomics reveals accelerated late Cretaceous diversification of bee flies (Diptera: Bombyliidae)
Cladistics
2021
Phylogenomic Discordance in the Eared Seals is best explained by Incomplete Lineage Sorting following Explosive Radiation in the Southern Hemisphere
Systematic Biology
2021
Phylogenomic relationships and character evolution of the grape family (Vitaceae)
Molecular Phylogenetics and Evolution
2021
Reconstructing Dipsacales phylogeny using Angiosperms353: issues and insights
American Journal of Botany
2021
Diverse phylogenomic datasets uncover a concordant scenario of laurasiatherian interordinal relationships
Molecular Phylogenetics and Evolution
2021
Target enrichment improves phylogenetic resolution in the genus Zanthoxylum (Rutaceae) and indicates both incomplete lineage sorting and hybridization events
Annals of Botany
2021
Lineage‐specific vs. universal: A comparison of the Compositae1061 and Angiosperms353 enrichment panels in the sunflower family
Applications in Plant Sciences
2021
Markers for genetic change
Heliyon
2021
Comprehending Cornales: phylogenetic reconstruction of the order using the Angiosperms353 probe set
American Journal of Botany
2021
Phylogenetic analysis places Spicaticribra within Cyclotella
Diatom Research
2021
The interplay between host biogeography and phylogeny in structuring diversification of the feather louse genus Penenirmus
Molecular Phylogenetics and Evolution
2021
Phylogenomic relationships of bioluminescent elateroids define the ‘lampyroid’ clade with clicking Sinopyrophoridae as its earliest member
Systematic Entomology
2021
Molecular phylogenetics of Lotus (Leguminosae) with emphasis in the tempo and patterns of colonization in the Macaronesian region
Molecular Phylogenetics and Evolution
2021
Towards a new classification of Muscidae (Diptera): a comparison of hypotheses based on multiple molecular phylogenetic approaches
Systematic Entomology
2021
Joining forces in Ochnaceae phylogenomics: a tale of two targeted sequencing probe kits
American Journal of Botany
2021
Taxonomic revision of a radiation of South-east Asian freshwater mussels (Unionidae : Gonideinae : Contradentini+Rectidentini)
Invertebrate Systematics
2020
Conflicting signal in transcriptomic markers leads to a poorly resolved backbone phylogeny of chalcidoid wasps
Systematic Entomology
2020
Uneven Missing Data Skew Phylogenomic Relationships within the Lories and Lorikeets
Genome Biology and Evolution
2020
Gene flow creates a mirage of cryptic species in a Southeast Asian spotted stream frog complex
Molecular Ecology
2020
A distinct lineage of Caudovirales that encodes a deeply branching multi-subunit RNA polymerase
Nature Communications
2020
Genome Sequence of the Euryhaline Javafish Medaka, Oryzias javanicus: A Small Aquarium Fish Model for Studies on Adaptation to Salinity
G3 Genes|Genomes|Genetics
2020
A phylogenomic analysis of Nepenthes (Nepenthaceae)
Molecular Phylogenetics and Evolution
2020
TREEasy: An automated workflow to infer gene trees, species trees, and phylogenetic networks from multilocus data
Molecular Ecology Resources
2020
Phylogenetic relationships and chloroplast capture in the Amelanchier-Malacomeles-Peraphyllum clade (Maleae, Rosaceae): Evidence from chloroplast genome and nuclear ribosomal DNA data using genome skimming
Molecular Phylogenetics and Evolution
2020
Acinetobacter baumannii NCIMB8209: a Rare Environmental Strain Displaying Extensive Insertion Sequence-Mediated Genome Remodeling Resulting in the Loss of Exposed Cell Structures and Defensive Mechanisms
mSphere
2020
CAPRIB: a user-friendly tool to study amino acid changes and selection for the exploration of intra-genus evolution
BMC Genomics
2020
Target-capture phylogenomics provide insights on gene and species tree discordances in Old World treefrogs (Anura: Rhacophoridae)
Proceedings of the Royal Society B: Biological Sciences
2020
Ancient Divergence Driven by Geographic Isolation and Ecological Adaptation in Forest Dependent Sundaland Tree Squirrels
Frontiers in Ecology and Evolution
2020
Phylogenomics of the Leaf-Footed Bug Subfamily Coreinae (Hemiptera: Coreidae)
Insect Systematics and Diversity
2020
Six new species of Begonia from Guangxi, China
Botanical Studies
2020
Phylogenomic and Morphological Reevaluation of the Bee Tribes Biastini, Neolarrini, and Townsendiellini (Hymenoptera: Apidae) With Description of Three New Species ofSchwarzia
Insect Systematics and Diversity
2020
A new target capture phylogeny elucidates the systematics and evolution of wing coupling in sack‐bearer moths
Systematic Entomology
2020
A deeper meaning for shallow‐level phylogenomic studies: nested anchored hybrid enrichment offers great promise for resolving the tiger moth tree of life (Lepidoptera: Erebidae: Arctiinae)
Systematic Entomology
2020
Larger, unfiltered datasets are more effective at resolving phylogenetic conflict: Introns, exons, and UCEs resolve ambiguities in Golden-backed frogs (Anura: Ranidae; genus Hylarana)
Molecular Phylogenetics and Evolution
2020
Improved systematics of lorikeets reflects their evolutionary history and frames conservation priorities
Emu - Austral Ornithology
2020
The assessment of leading traits in the taxonomy of the Bacillus cereus group
Antonie van Leeuwenhoek
2020
Mitogenomes Reveal Multiple Colonization of Mountains by Rattus in Sundaland
Journal of Heredity
2020
A transmissible cancer shifts from emergence to endemism in Tasmanian devils
Science
2020
Precise Species Identification and Taxonomy Update for the Genus Kluyvera With Reporting Kluyvera sichuanensis sp. nov.
Frontiers in Microbiology
2020
Hikarchaeia demonstrate an intermediate stage in the methanogen-to-halophile transition
Nature Communications
2020
Precise Species Identification for Enterobacter : a Genome Sequence-Based Study with Reporting of Two Novel Species, Enterobacter quasiroggenkampii sp. nov. and Enterobacter quasimori sp. nov
mSystems
2020
Genome-based classification of Burkholderia cepacia complex provides new insight into its taxonomic status
Biology Direct
2020
Reappraising plastid markers of the red algae for phylogenetic community ecology in the genomic era
Ecology and Evolution
2020
A first phylogenomic hypothesis for Eulophidae (Hymenoptera, Chalcidoidea)
Journal of Natural History
2020
So Closely Related and Yet So Different: Strong Contrasts Between the Evolutionary Histories of Species of the Cardamine pratensis Polyploid Complex in Central Europe
Frontiers in Plant Science
2020
Introgression across evolutionary scales suggests reticulation contributes to Amazonian tree diversity
Molecular Ecology
2020
Host-symbiont coevolution, cryptic structure, and bleaching susceptibility, in a coral species complex (Scleractinia; Poritidae)
Scientific Reports
2020
Major clades and a revised classification of Magnolia and Magnoliaceae based on whole plastid genome sequences via genome skimming
Journal of Systematics and Evolution
2020
Spaghetti to a Tree: A Robust Phylogeny for Terebelliformia (Annelida) Based on Transcriptomes, Molecular and Morphological Data
Biology
2020
Phylogenomics unravels Quaternary vicariance and allopatric speciation patterns in temperate‐montane plant species: A case study on the Ranunculus auricomus species complex
Molecular Ecology
2020
A multidimensional systems biology analysis of cellular senescence in aging and disease
Genome Biology
2020
Generic boundaries in subtribe Saussureinae (Compositae: Cardueae): Insights from Hyb‐Seq data
TAXON
2020
A Phylogenomic Perspective on Evolution and Discordance in the Alpine-Arctic Plant Clade Micranthes (Saxifragaceae)
Frontiers in Plant Science
2020
Comprehensive phylogenomic analyses re-write the evolution of parasitism within cynipoid wasps
BMC Evolutionary Biology
2020
Phylogenomics — principles, opportunities and pitfalls of big‐data phylogenetics
Systematic Entomology
2020
UCE data reveal multiple origins of rose gallers in North America: Global phylogeny of Diplolepis Geoffroy (Hymenoptera: Cynipidae)
Molecular Phylogenetics and Evolution
2020
Global domination by crazy ants: phylogenomics reveals biogeographical history and invasive species relationships in the genus Nylanderia (Hymenoptera: Formicidae)
Systematic Entomology
2020
Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus
PLOS Genetics
2020
Synergism between the Black Queen effect and the proteomic constraint on genome size reduction in the photosynthetic picoeukaryotes
Scientific Reports
2020
Reconstructing the Complex Evolutionary History of the Papuasian Schefflera Radiation Through Herbariomics
Frontiers in Plant Science
2020
Genomic Evidence for Sensorial Adaptations to a Nocturnal Predatory Lifestyle in Owls
Genome Biology and Evolution
2020
Two evolutionary units on the South American razor clam Ensis macha (Bivalvia: Pharidae): genetic and morphometric evidence
Organisms Diversity & Evolution
2020
Unraveling the Spiraling Radiation: A Phylogenomic Analysis of Neotropical Costus L
Frontiers in Plant Science
2020
Comparative genomic analysis of Vibrios yields insights into genes associated with virulence towards C. gigas larvae
BMC Genomics
2020
Transgressing Wallace's Line brings hyperdiverse weevils down to earth
Ecography
2020
Evolutionary Origins of Three Rare Alpine-Endemic Species ofLomatium(Apiaceae) in the Wallowa and Elkhorn Mountains of Northeastern Oregon
International Journal of Plant Sciences
2020
Mayahuelin, a Type I Ribosome Inactivating Protein: Characterization, Evolution, and Utilization in Phylogenetic Analyses of Agave
Frontiers in Plant Science
2020
RNA-Seq of three free-living flatworm species suggests rapid evolution of reproduction-related genes
BMC Genomics
2020
Data, time and money: evaluating the best compromise for inferring molecular phylogenies of non-model animal taxa
Molecular Phylogenetics and Evolution
2020
Eriobotrya Belongs to Rhaphiolepis (Maleae, Rosaceae): Evidence From Chloroplast Genome and Nuclear Ribosomal DNA Data
Frontiers in Plant Science
2019
An empirical assessment of a single family‐wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae
Applications in Plant Sciences
2019
Convergent Evolution of the Army Ant Syndrome and Congruence in Big-Data Phylogenetics
Systematic Biology
2019
Investigation of the virulence and genomics of Aeromonas salmonicida strains isolated from human patients
Infection, Genetics and Evolution
2019
Nuclear and plastid DNA phylogeny of tribe Cardueae (Compositae) with Hyb-Seq data: A new subtribal classification and a temporal diversification framework
Molecular Phylogenetics and Evolution
2019
GeM-Pro: a tool for genome functional mining and microbial profiling
Applied Microbiology and Biotechnology
2019
Evolutionary Rate Correlation between Mitochondrial-Encoded and Mitochondria-Associated Nuclear-Encoded Proteins in Insects
Molecular Biology and Evolution
2019
Α Quantum Pattern Recognition Method for Improving Pairwise Sequence Alignment
Scientific Reports
2019
Phylogeny, origin and dispersal of Saussurea (Asteraceae) based on chloroplast genome data
Molecular Phylogenetics and Evolution
2019
A Mesophilic Aeromonas salmonicida Strain Isolated from an Unsuspected Host, the Migratory Bird Pied Avocet
Microorganisms
2019
Evolution of fossil and living spider flies based on morphological and molecular data (Diptera, Acroceridae)
Systematic Entomology
2019
Towards resolving and redefining Amphipyrinae (Lepidoptera, Noctuoidea, Noctuidae): a massively polyphyletic taxon
Systematic Entomology
2019
Optimized DNA extraction and library preparation for minute arthropods: Application to target enrichment in chalcid wasps used for biocontrol
Molecular Ecology Resources
2019
DNA barcodes reveal inconsistent species boundaries in Diplolepis rose gall wasps and their Periclistus inquilines (Hymenoptera: Cynipidae)
The Canadian Entomologist
2019
Phylogenomic analyses reveal an exceptionally high number of evolutionary shifts in a florally diverse clade of African legumes
Molecular Phylogenetics and Evolution
2019
Genome-wide epistasis and co-selection study using mutual information
Nucleic Acids Research
2019
Genome sequencing and comparison of five Tilletia species to identify candidate genes for the detection of regulated species infecting wheat
IMA Fungus
2019
Head Shape Modulates Diversification of a Classic Cichlid Pharyngeal Jaw Innovation
The American Naturalist
2019
Phylogenomic analysis resolves the relationships among net‐winged beetles (Coleoptera: Lycidae) and reveals the parallel evolution of morphological traits
Systematic Entomology
2019
Compositional heterogeneity and outgroup choice influence the internal phylogeny of the ants
Molecular Phylogenetics and Evolution
2019
Impacts of Inference Method and Data set Filtering on Phylogenomic Resolution in a Rapid Radiation of Ground Squirrels (Xerinae: Marmotini)
Systematic Biology
2019
A customized nuclear target enrichment approach for developing a phylogenomic baseline for Dioscorea yams (Dioscoreaceae)
Applications in Plant Sciences
2019
Providencia huaxiensis sp. nov., recovered from a human rectal swab
International Journal of Systematic and Evolutionary Microbiology
2019
Post K-Pg diversification of the mammalian order Eulipotyphla as suggested by phylogenomic analyses of ultra-conserved elements
Molecular Phylogenetics and Evolution
2019
Revisiting the taxonomy and evolution of pathogenicity of the genus Leptospira through the prism of genomics
PLOS Neglected Tropical Diseases
2019
Evolution of green lacewings (Neuroptera: Chrysopidae): an anchored phylogenomics approach
Systematic Entomology
2019
Phylogenomics Yields New Insight Into Relationships Within Vernonieae (Asteraceae)
Frontiers in Plant Science
2019
Mitochondrial DNA and their nuclear copies in the parasitic wasp Pteromalus puparum: A comparative analysis in Chalcidoidea
International Journal of Biological Macromolecules
2019
Mobilome of Brevibacterium aurantiacum Sheds Light on Its Genetic Diversity and Its Adaptation to Smear-Ripened Cheeses
Frontiers in Microbiology
2019
Phylogenetic relationships among species of Barleria (Acanthaceae, Lamiales): Molecular data reveal complex patterns of morphological evolution and support a revised classification
TAXON
2019
RNAseq‐based phylogenetic reconstruction of Taxaceae and Cephalotaxaceae
Cladistics
2019
Phylogenomic analyses of thePhotiniacomplex support the recognition of a new genusPhippsiomelesand the resurrection of a redefinedStranvaesiain Maleae (Rosaceae)
Journal of Systematics and Evolution
2019
Chloroplast primers for clade‐wide phylogenetic studies of Thalictrum
Applications in Plant Sciences
2019
Orthologous nuclear markers and new transcriptomes that broadly cover the phylogenetic diversity of Acanthaceae
Applications in Plant Sciences
2018
Genomic and phenotypic characterization of an atypical Aeromonas salmonicida strain isolated from a lumpfish and producing unusual granular structures
Journal of Fish Diseases
2018
Paleotropical Diversification Dominates the Evolution of the Hyperdiverse Ant Tribe Crematogastrini (Hymenoptera: Formicidae)
Insect Systematics and Diversity
2018
Anchored phylogenomics unravels the evolution of spider flies (Diptera, Acroceridae) and reveals discordance between nucleotides and amino acids
Molecular Phylogenetics and Evolution
2018
Museum specimens provide phylogenomic data to resolve relationships of sack‐bearer moths (Lepidoptera, Mimallonoidea, Mimallonidae)
Systematic Entomology
2018
Targeting legume loci: A comparison of three methods for target enrichment bait design in Leguminosae phylogenomics
Applications in Plant Sciences
2018
Trait‐specific processes of convergence and conservatism shape ecomorphological evolution in ground‐dwelling squirrels
Evolution
2018
Hidden endemism, deep polyphyly, and repeated dispersal across the Isthmus of Tehuantepec: Diversification of the White‐collared Seedeater complex (Thraupidae: Sporophila torqueola)
Ecology and Evolution
2018
Signal, Uncertainty, and Conflict in Phylogenomic Data for a Diverse Lineage of Microbial Eukaryotes (Diatoms, Bacillariophyta)
Molecular Biology and Evolution
2018
Phylogenomics picks out the par excellence markers for species phylogeny in the genus Staphylococcus
PeerJ
2018
The Mycobacterial Cell Envelope: A Relict From the Past or the Result of Recent Evolution?
Frontiers in Microbiology
2018
Oak genome reveals facets of long lifespan
Nature Plants
2018
HybPhyloMaker: Target Enrichment Data Analysis From Raw Reads to Species Trees
Evolutionary Bioinformatics
2018
Reconstructing the functions of endosymbiotic Mollicutes in fungus-growing ants
eLife
2018
Genome sequence of walking catfish (Clarias batrachus) provides insights into terrestrial adaptation
BMC Genomics
2018
Exploring data processing strategies in NGS target enrichment to disentangle radiations in the tribe Cardueae (Compositae)
Molecular Phylogenetics and Evolution
2018
Bridging the micro‐ and macroevolutionary levels in phylogenomics: Hyb‐Seq solves relationships from populations to species and above
New Phytologist
2018
Enterobacter sichuanensis sp. nov., recovered from human urine
International Journal of Systematic and Evolutionary Microbiology
2018
Phylogenomics reveals an extensive history of genome duplication in diatoms (Bacillariophyta)
American Journal of Botany
2018
Convergent evolution of complex structures for ant–bacterial defensive symbiosis in fungus-farming ants
Proceedings of the National Academy of Sciences
2018
Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils
Molecular Biology and Evolution
2018
Recurrent Loss, Horizontal Transfer, and the Obscure Origins of Mitochondrial Introns in Diatoms (Bacillariophyta)
Genome Biology and Evolution
2018
Evolution of lacewings and allied orders using anchored phylogenomics (Neuroptera, Megaloptera, Raphidioptera)
Systematic Entomology
2018
Resolving the rapid plant radiation of early diverging lineages in the tropical Zingiberales: Pushing the limits of genomic data
Molecular Phylogenetics and Evolution
2017
Genetic diversity and population structure ofBrachymystax lenok tsinlingensisusing mitochondrial DNA sequences
Mitochondrial DNA Part B
2017
Phylogenomic Insights into Mouse Evolution Using a Pseudoreference Approach
Genome Biology and Evolution
2017
Insights into the evolution, biogeography and natural history of the acorn ants, genus Temnothorax Mayr (hymenoptera: Formicidae)
BMC Evolutionary Biology
2017
Phylogenomic analyses of 539 highly informative loci dates a fully resolved time tree for the major clades of living turtles (Testudines)
Molecular Phylogenetics and Evolution
2017
Strong Genomic and Phenotypic Heterogeneity in the Aeromonas sobria Species Complex
Frontiers in Microbiology
2017
Ecological opportunity alters the timing and shape of adaptive radiation
Evolution
2017
Phylogenomic analysis of a rapid radiation of misfit fishes (Syngnathiformes) using ultraconserved elements
Molecular Phylogenetics and Evolution
2017
The impact of GC bias on phylogenetic accuracy using targeted enrichment phylogenomic data
Molecular Phylogenetics and Evolution
2017
The generic status of Rattus annandalei (Bonhote, 1903) (Rodentia, Murinae) and its evolutionary implications
Journal of Mammalogy
2016
Out of the Neotropics: newly discovered relictual species sheds light on the biogeographical history of spider ants (Leptomyrmex, Dolichoderinae, Formicidae)
Systematic Entomology
2016
Sequence Capture and Phylogenetic Utility of Genomic Ultraconserved Elements Obtained from Pinned Insect Specimens
PLOS ONE
2015
Comparative Genomics of Amphibian-like Ranaviruses, Nucleocytoplasmic Large DNA Viruses of Poikilotherms
Evolutionary Bioinformatics
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