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2025
Role of gut microbiota and its functional products in prenatal alcohol-induced anxiety-like behavior
Progress in Neuro-Psychopharmacology and Biological Psychiatry
2025
A shortcut to sample coverage standardization in metabarcoding data provides new insights into land-use effects on insect diversity
Proceedings of the Royal Society B: Biological Sciences
2025
Enhanced understanding of nitrogen fixing bacteria through DNA extraction with polyvinylidene fluoride membrane
Scientific Reports
2025
The impact of tree mortality and post‐disturbance management on insect diversity in temperate forests: Insights from a replicated experiment
Journal of Applied Ecology
2025
High Schistosoma mansoni infection intensity is associated with distinct gut microbiota and low levels of systemic cytokines in children along the Albert-Nile, Northern Uganda
BMC Microbiology
2025
Identifying one-inflation in regression models for ratio estimators in single-source capture-recapture problems
Journal of Statistical Computation and Simulation
2025
Quantifying and relating the completeness and diversity of process representations using species estimation
Information Systems
2025
Biogeographic Patterns of Estimation Bias of Biodiversity Indices
Journal of Biogeography
2024
The fecal microbiota of the mouse-eared bat (Myotis velifer) with new records of microbial taxa for bats
PLOS ONE
2024
Modulation of AAV transduction and integration targeting by topoisomerase poisons
Molecular Therapy - Methods & Clinical Development
2024
Rapid SARS-CoV-2 surveillance using clinical, pooled, or wastewater sequence as a sensor for population change
Genome Research
2024
Global transmission of extended-spectrum cephalosporin resistance in Escherichia coli driven by epidemic plasmids
eBioMedicine
2024
Estimating the number of sequencing errors in microbial diversity studies
Environmental and Ecological Statistics
2024
A Tutorial on Net Benefit Regression for Real-World Cost-Effectiveness Analysis Using Censored Data from Randomized or Observational Studies
Medical Decision Making
2024
Semi-parametric Bayesian approach for population size estimation modelling the excess of singletons
Journal of the Royal Statistical Society Series C: Applied Statistics
2024
Differentiated cognition of the effects of human activities on typical persistent organic pollutants and bacterioplankton community in drinking water source
Environmental Research
2024
Manipulation of the seagrass‐associated microbiome reduces disease severity
Environmental Microbiology
2024
How to best detect threatened deadwood fungi – Comparing metabarcoding and fruit body surveys
Biological Conservation
2024
Insomnia, OSA, and Mood Disorders: The Gut Connection
Current Psychiatry Reports
2023
Stable coexistence or competitive exclusion? Fern endophytes demonstrate rapid turnover favouring a dominant fungus
Molecular Ecology
2023
Microbial community composition and function in an urban waterway with combined sewer overflows before and after implementation of a stormwater storage pipe
PeerJ
2023
The effect of low-abundance OTU filtering methods on the reliability and variability of microbial composition assessed by 16S rRNA amplicon sequencing
Frontiers in Cellular and Infection Microbiology
2023
Monospecies probiotic preparation and administration with downstream analysis of sex-specific effects on gut microbiome composition in mice
STAR Protocols
2023
Effect of gut microbial composition and diversity on major inhaled allergen sensitization and onset of allergic rhinitis
Allergology International
2022
Neglected epiphytism: Accidental epiphytes dominate epiphytic communities on tree ferns in the Atlantic Forest
Biotropica
2022
Microbiome–host-phylogeny relationships in animal gastrointestinal tract microbiomes
FEMS Microbiology Ecology
2022
Assessment of microbial α-diversity in one meter squared topsoil
Soil Ecology Letters
2022
The number of tree species on Earth
Proceedings of the National Academy of Sciences
2022
The community ecology perspective of omics data
Microbiome
2022
Bayesian analysis of one‐inflated models for elusive population size estimation
Biometrical Journal
2022
Differential richness inference for 16S rRNA marker gene surveys
Genome Biology
2022
The air mycobiome is decoupled from the soil mycobiome in the California San Joaquin Valley
Molecular Ecology
2022
The gut microbiome variability of a butterflyfish increases on severely degraded Caribbean reefs
Communications Biology
2022
Temporary establishment of bacteria from indoor plant leaves and soil on human skin
Environmental Microbiome
2022
Small Area Estimates for National Applications: A Database to Dashboard Strategy Using FIESTA
Frontiers in Forests and Global Change
2022
Species abundance distribution and species accumulation curve: a general framework and results
Electronic Journal of Statistics
2021
Defining and quantifying the core microbiome: Challenges and prospects
Proceedings of the National Academy of Sciences
2021
Long‐term inorganic nitrogen application changes the ammonia‐oxidizing archaeal community composition in paddy soils
European Journal of Soil Science
2021
All together now: Limitations and recommendations for the simultaneous analysis of all eukaryotic soil sequences
Molecular Ecology Resources
2021
Diverse methanogens, bacteria and tannase genes in the feces of the endangered volcano rabbit (Romerolagus diazi)
PeerJ
2021
Diversity and Metabolic Potential of the Terrestrial Mud Volcano Microbial Community with a High Abundance of Archaea Mediating the Anaerobic Oxidation of Methane
Life
2021
A Neurotoxic Insecticide Promotes Fungal Infection in Aedes aegypti Larvae by Altering the Bacterial Community
Microbial Ecology
2021
Mangroves are an overlooked hotspot of insect diversity despite low plant diversity
BMC Biology
2021
Distinct organization of adaptive immunity in the long-lived rodent Spalax galili
Nature Aging
2021
Scheduled Empiric Antibiotics May Alter the Gut Microbiome and Nutrition Outcomes in Pediatric Intestinal Failure
Nutrition in Clinical Practice
2021
Rigorous quantification of bacterial richness in ticks: A case study
Molecular Ecology
2021
Challenges in estimating numbers of vectors integrated in gene-modified cells using DNA sequence information
Molecular Therapy
2021
A conceptual guide to measuring species diversity
Oikos
2021
Composition and Functional Characteristics and Influencing Factors of Bacterioplankton Community in the Huangshui River, China
Microorganisms
2020
Inventory statistics meet big data: complications for estimating numbers of species
PeerJ
2020
Metabolic insight into bacterial community assembly across ecosystem boundaries
Ecology
2020
Rice bran arabinoxylan compound and quality of life of cancer patients (RBAC-QoL): Study protocol for a randomized pilot feasibility trial
Contemporary Clinical Trials Communications
2020
Microbiomes of a specialist caterpillar are consistent across different habitats but also resemble the local soil microbial communities
Animal Microbiome
2020
Signatures of TRI5, TRI8 and TRI11 Protein Sequences of Fusarium incarnatum-equiseti Species Complex (FIESC) Indicate Differential Trichothecene Analogue Production
Toxins
2020
From environmental DNA sequences to ecological conclusions: How strong is the influence of methodological choices?
Journal of Biogeography
2020
Stem Endophytic Mycobiota in Wild and Domesticated Wheat: Structural Differences and Hidden Resources for Wheat Improvement
Journal of Fungi
2020
Stream microbial communities and ecosystem functioning show complex responses to multiple stressors in wastewater
Global Change Biology
2019
A guide to the application of Hill numbers to DNA‐based diversity analyses
Molecular Ecology Resources
2019
Fungi associated with beetles dispersing from dead wood – Let's take the beetle bus!
Fungal Ecology
2019
A modification of Chao’s lower bound estimator in the case of one-inflation
Metrika
2019
Comparison of the microbiomes of two drinking water distribution systems—with and without residual chloramine disinfection
Microbiome
2019
Bacterial community composition and diversity in Koshi River, the largest river of Nepal
Ecological Indicators
2019
A census-based estimate of Earth's bacterial and archaeal diversity
PLOS Biology
2018
Ecological Stability Properties of Microbial Communities Assessed by Flow Cytometry
mSphere
2018
Comparative analysis of murine T‐cell receptor repertoires
Immunology
2018
Genetic Bioaugmentation of Activated Sludge with Dioxin-Catabolic Plasmids Harbored by Rhodococcus sp. Strain p52
Environmental Science & Technology
2018
Autoreactive IgG and IgA B Cells Evolve through Distinct Subclass Switch Pathways in the Autoimmune Disease Pemphigus Vulgaris
Cell Reports
2018
DAR (diversity–area relationship): Extending classic SAR (species–area relationship) for biodiversity and biogeography analyses
Ecology and Evolution
2018
Effects of sampling effort on biodiversity patterns estimated from environmental DNA metabarcoding surveys
Scientific Reports
2018
Biological invasions increase the richness of arbuscular mycorrhizal fungi from a Hawaiian subtropical ecosystem
Biological Invasions
2018
Fungal communities in organic and mineral soil horizons in an industrially polluted boreal forest
Biodiversity
2018
Assessing and Interpreting the Within-Body Biogeography of Human Microbiome Diversity
Frontiers in Microbiology
2018
Gut microbial features can predict host phenotype response to protein deficiency
Physiological Reports
2018
Metagenomics
2017
Effect of Environmental Variation on Estimating the Bacterial Species Richness
Frontiers in Microbiology
2017
Fungal endophyte communities in the temperate fernPolystichum munitumshow early colonization and extensive temporal turnover
American Journal of Botany
2017
Uncovering unseen fungal diversity from plant DNA banks
PeerJ
2017
Phyllosphere Metaproteomes of Trees from the Brazilian Atlantic Forest Show High Levels of Functional Redundancy
Microbial Ecology
2017
Diversity and composition of herbaceous angiosperms along gradients of elevation and forest-use intensity
PLOS ONE
2017
Community composition and assembly processes of the free-living and particle-attached bacteria in Taihu Lake
FEMS Microbiology Ecology
2016
Encyclopedia of Life Sciences
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