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2025	Intra-tumor microbiome-based tumor survival indices predict immune interaction and drug sensitivity on pan-cancer scale mSystems Yan Gao, Haohong Zhang, Dongliang Chu, Kang Ning
2025	AI-driven multi-modal framework for prognostic modeling in glioblastoma: Enhancing clinical decision support Computerized Medical Imaging and Graphics Zihan Zhao, Nguyen Quoc Khanh Le, Matthew Chin Heng Chua
2024	AH-6809 mediated regulation of lung adenocarcinoma metastasis through NLRP7 and prognostic analysis of key metastasis-related genes Frontiers in Pharmacology Xu Feng, Wei Wu, Feifei Liu
2024	Deep learning enabled integration of tumor microenvironment microbial profiles and host gene expressions for interpretable survival subtyping in diverse types of cancers mSystems Haohong Zhang, Xinghao Xiong, Mingyue Cheng, Lei Ji, Kang Ning
2023	Prognostic and clinicopathological role of RACK1 for cancer patients: a systematic review and meta-analysis PeerJ Qiuhao Wang, Sixin Jiang, Yuqi Wu, You Zhang, Mei Huang, Yan Qiu, Xiaobo Luo
2023	A patient-specific functional module and path identification technique from RNA-seq data Computers in Biology and Medicine Riasat Azim, Shulin Wang, Shoaib Ahmed Dipu, Nazmin Islam, Munshi Rezwan Ala Muid, Md Fazla Elahe, Mei Li
2023	Methods in Molecular Biology Le Minh Thao Doan, Claudio Angione, Annalisa Occhipinti
2022	The E3 ubiquitin ligase HECTD1 contributes to cell proliferation through an effect on mitosis Scientific Reports Natalie Vaughan, Nico Scholz, Catherine Lindon, Julien D. F. Licchesi
2022	Genome-wide identification and analysis of prognostic features in human cancers Cell Reports Joan C. Smith, Jason M. Sheltzer
2022	Pan-cancer surveys indicate cell cycle-related roles of primate-specific genes in tumors and embryonic cerebrum Genome Biology Chenyu Ma, Chunyan Li, Huijing Ma, Daqi Yu, Yufei Zhang, Dan Zhang, Tianhan Su, Jianmin Wu, Xiaoyue Wang, Li Zhang, Chun-Long Chen, Yong E. Zhang
2022	A New Approach to Deriving Prognostic Gene Pairs From Cancer Patient-Specific Gene Correlation Networks IEEE/ACM Transactions on Computational Biology and Bioinformatics Byungkyu Park, Wook Lee, Kyungsook Han
2022	A-to-I nonsynonymous RNA editing was significantly enriched in the ubiquitination site and correlated with clinical features and immune response Scientific Reports Haixia Li, Jianjun Wang, Juchuanli Tu
2021	GeneCoNet: A web application server for constructing cancer patient-specific gene correlation networks with prognostic gene pairs Computer Methods and Programs in Biomedicine Byungkyu Park, Wook Lee, Kyungsook Han
2021	DeepProg: an ensemble of deep-learning and machine-learning models for prognosis prediction using multi-omics data Genome Medicine Olivier B. Poirion, Zheng Jing, Kumardeep Chaudhary, Sijia Huang, Lana X. Garmire
2021	Characterization of the Survival Influential Genes in Carcinogenesis International Journal of Molecular Sciences Divya Sahu, Yu-Lin Chang, Yin-Chen Lin, Chen-Ching Lin
2020	The SWI/SNF complex in cancer — biology, biomarkers and therapy Nature Reviews Clinical Oncology Priya Mittal, Charles W. M. Roberts
2020	Downregulation of ST3GAL5 is associated with muscle invasion, high grade and a poor prognosis in patients with bladder cancer Oncology Letters Song Ouyang, Ji‑Hong Liu, Zhao Ni, Guo‑Fu Ding, Qin‑Zhang Wang
2020	Cancer prognosis prediction using somatic point mutation and copy number variation data: a comparison of gene-level and pathway-based models BMC Bioinformatics Xingyu Zheng, Christopher I. Amos, H. Robert Frost
2019	Characterization of bidirectional gene pairs in The Cancer Genome Atlas (TCGA) dataset PeerJ Juchuanli Tu, Xiaolu Li, Jianjun Wang
2019	Neural Activities Are Unfavorable for the Prognosis of Ovarian Cancer Through Mrna Expression Analysis Biomarkers in Medicine Lili Yang, Li Bie, Liqun Sun, Ying Yue
2019	The mitochondrial chaperone Prohibitin 1 negatively regulates interleukin-8 in human liver cancers Journal of Biological Chemistry Jin Won Yang, Ben Murray, Lucia Barbier-Torres, Ting Liu, Zhenqiu Liu, Heping Yang, Wei Fan, Jiaohong Wang, Yuan Li, Ekihiro Seki, José M. Mato, Shelly C. Lu
2019	Exploration of prognosis-related microRNA and transcription factor co-regulatory networks across cancer types RNA Biology Ruijiang Li, Shuai Jiang, Wanying Li, Hao Hong, Chenghui Zhao, Xin Huang, Zhuo Zhang, Hao Li, Hebing Chen, Xiaochen Bo
2018	GIFT: Guided and Interpretable Factorization for Tensors with an application to large-scale multi-platform cancer analysis Bioinformatics Jungwoo Lee, Sejoon Oh, Lee Sael
2018	Systematic identification of mutations and copy number alterations associated with cancer patient prognosis eLife Joan C Smith, Jason M Sheltzer
2018	Cancer transcriptome profiling at the juncture of clinical translation Nature Reviews Genetics Marcin Cieślik, Arul M. Chinnaiyan
2016	OncoLnc: linking TCGA survival data to mRNAs, miRNAs, and lncRNAs PeerJ Computer Science Jordan Anaya
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