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2025	L2S2: chemical perturbation and CRISPR KO LINCS L1000 signature search engine Nucleic Acids Research Giacomo B Marino, John E Evangelista, Daniel J B Clarke, Avi Ma’ayan
2025	lncRNAlyzr: Enrichment Analysis for lncRNA Sets Journal of Molecular Biology John Erol Evangelista, Tahleel Ali-Nasser, Lauren E. Malek, Zhuorui Xie, Giacomo B. Marino, Assaf C. Bester, Avi Ma’ayan
2024	Comparative analysis of single-cell pathway scoring methods and a novel approach NAR Genomics and Bioinformatics Ruoqiao H Wang, Juilee Thakar
2024	Exploring salt tolerance mechanisms using machine learning for transcriptomic insights: case study in Spartina alterniflora Horticulture Research Zhangping Huang, Shoukun Chen, Kunhui He, Tingxi Yu, Junjie Fu, Shang Gao, Huihui Li
2024	2024 Asian Conference on Communication and Networks (ASIANComNet) A. Manimaran, K. S. Balamurugan, Mohammed I. Hashim, Fatima Hashim, Hussein Ali Rasool, Dulfikar Jawad Hashim
2023	lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs Database Giacomo B Marino, Megan L Wojciechowicz, Daniel J B Clarke, Maxim V Kuleshov, Zhuorui Xie, Minji Jeon, Alexander Lachmann, Avi Ma’ayan
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