Citation sources

Updated weekly. Details via Crossref
Crossref Scopus Google Scholar
134 112 Search
2020
Reference Module in Food Science
2020
Infant respiratory syncytial virus prophylaxis and nasopharyngeal microbiota until 6 years of life: a subanalysis of the MAKI randomised controlled trial
The Lancet Respiratory Medicine
2020
Reference Module in Life Sciences
2020
Pattern analysis of genetics and genomics: a survey of the state-of-art
Multimedia Tools and Applications
2020
Analysis of microbial communities involved in organic matter and nitrogen removal in a full-scale moving bed biofilm reactor located near the Polar Arctic Circle
International Biodeterioration & Biodegradation
2020
Advances in Food and Nutrition Research
2020
ReClustOR: a re‐clustering tool using an open‐reference method that improves operational taxonomic unit definition
Methods in Ecology and Evolution
2020
Reference Module in Food Science
2020
Polar Arctic Circle biomass enhances performance and stability of aerobic granular sludge systems operated under different temperatures
Bioresource Technology
2020
DISCo-microbe: design of an identifiable synthetic community of microbes
PeerJ
2020
Progress in Molecular Biology and Translational Science
2019
Untapped sponge microbiomes: structure specificity at host order and family levels
FEMS Microbiology Ecology
2019
Understanding and overcoming the pitfalls and biases of next-generation sequencing (NGS) methods for use in the routine clinical microbiological diagnostic laboratory
European Journal of Clinical Microbiology & Infectious Diseases
2019
Bioinformatics matters: The accuracy of plant and soil fungal community data is highly dependent on the metabarcoding pipeline
Fungal Ecology
2019
Responses of Bacterial and Fungal Community Structure to Different Rates of 1,3-Dichloropropene Fumigation
Phytobiomes Journal
2019
High-throughput DNA sequencing technologies for water and wastewater analysis
Science Progress
2019
Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms
Microbiome
2019
A De Novo Robust Clustering Approach for Amplicon-Based Sequence Data
Journal of Computational Biology
2019
Insight on the bacterial ecology in membrane bioreactor: Operational conditions effect over dominant ecological players
AIChE Journal
2019
Enriched taxa were found among the gut microbiota of centenarians in East China
PLOS ONE
2019
iMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis
BMC Bioinformatics
2019
A critical analysis of state-of-the-art metagenomics OTU clustering algorithms
Journal of Biosciences
2019
Influent salinity conditions affect the bacterial communities of biofouling in hybrid MBBR-MBR systems
Journal of Water Process Engineering
2019
Experimental old nest material predicts hoopoe Upupa epops eggshell and uropygial gland microbiota
Journal of Avian Biology
2019
Metabarcoding free‐living marine nematodes using curated 18S and CO1 reference sequence databases for species‐level taxonomic assignments
Ecology and Evolution
2019
Current challenges and best-practice protocols for microbiome analysis
Briefings in Bioinformatics
2019
Shifts in Ectomycorrhizal Fungal Communities and Exploration Types Relate to the Environment and Fine-Root Traits Across Interior Douglas-Fir Forests of Western Canada
Frontiers in Plant Science
2019
Encyclopedia of Water
2019
Identification and evaluation of the microbiome in the female and male reproductive tracts
Human Reproduction Update
2019
SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data
BMC Bioinformatics
2019
Host NLRP6 exacerbates graft-versus-host disease independent of gut microbial composition
Nature Microbiology
2019
DMSC: A Dynamic Multi-Seeds Method for Clustering 16S rRNA Sequences Into OTUs
Frontiers in Microbiology
2019
Archaeorhizomycetes Spatial Distribution in Soils Along Wide Elevational and Environmental Gradients Reveal Co-abundance Patterns With Other Fungal Saprobes and Potential Weathering Capacities
Frontiers in Microbiology
2019
Influence of salinity cycles in bioreactor performance and microbial community structure of membrane-based tidal-like variable salinity wastewater treatment systems
Environmental Science and Pollution Research
2019
The impact of OTU sequence similarity threshold on diatom-based bioassessment: A case study of the rivers of Mayotte (France, Indian Ocean)
Ecology and Evolution
2019
Genome-wide association studies on the phyllosphere microbiome: Embracing complexity in host-microbe interactions
The Plant Journal
2019
Systematic processing of ribosomal RNA gene amplicon sequencing data
GigaScience
2019
Reintroducing mothur: 10 Years Later
Applied and Environmental Microbiology
2019
Latitudinal gradient of cyanobacterial diversity in tidal flats
PLOS ONE
2019
Full Issue PDF
Phytobiomes Journal
2018
Community profiling of the urinary microbiota: considerations for low-biomass samples
Nature Reviews Urology
2018
Modulation of the Fecal Microbiota in Sprague-Dawley Rats Using Genetically Modified and Isogenic Corn Lines
Journal of Agricultural and Food Chemistry
2018
Microplastic pollution increases gene exchange in aquatic ecosystems
Environmental Pollution
2018
Increased Variance in Oral and Gastric Microbiome Correlates With Esophagectomy Anastomotic Leak
The Annals of Thoracic Surgery
2018
Microbial ecology of full-scale wastewater treatment systems in the Polar Arctic Circle: Archaea, Bacteria and Fungi
Scientific Reports
2018
Detection of stable community structures within gut microbiota co-occurrence networks from different human populations
PeerJ
2018
Sequence clustering in bioinformatics: an empirical study
Briefings in Bioinformatics
2018
Impact of DNA Sequencing and Analysis Methods on 16S rRNA Gene Bacterial Community Analysis of Dairy Products
mSphere
2018
Highlighting Clinical Metagenomics for Enhanced Diagnostic Decision-making: A Step Towards Wider Implementation
Computational and Structural Biotechnology Journal
2018
Methods in Molecular Biology
2018
Terminal restriction fragment length polymorphism is an “old school” reliable technique for swift microbial community screening in anaerobic digestion
Scientific Reports
2018
The impact of bacteriophages on phyllosphere bacterial abundance and composition
Molecular Ecology
2018
Comparison of Mothur and QIIME for the Analysis of Rumen Microbiota Composition Based on 16S rRNA Amplicon Sequences
Frontiers in Microbiology
2018
The gut microbiome is required for full protection against acute arsenic toxicity in mouse models
Nature Communications
2018
A common garden experiment with Porphyra umbilicalis (Rhodophyta) evaluates methods to study spatial differences in the macroalgal microbiome
Journal of Phycology
2018
Pollutants degradation performance and microbial community structure of aerobic granular sludge systems using inoculums adapted at mild and low temperature
Chemosphere
2018
Scaling up: A guide to high-throughput genomic approaches for biodiversity analysis
Molecular Ecology
2018
NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform
GigaScience
2018
Microbial metabolite sensor GPR43 controls severity of experimental GVHD
Nature Communications
2018
Maximum Influent Salinity Affects the Diversity of Mineral-Precipitation-Mediating Bacterial Communities in Membrane Biofilm of Hybrid Moving Bed Biofilm Reactor-Membrane Bioreactor
Water, Air, & Soil Pollution
2018
The Madness of Microbiome: Attempting To Find Consensus “Best Practice” for 16S Microbiome Studies
Applied and Environmental Microbiology
2018
The fecal metabolome as a functional readout of the gut microbiome
Nature Genetics
2018
A comparison of bioinformatic approaches for 16S rRNA gene profiling of food bacterial microbiota
International Journal of Food Microbiology
2018
Bacterial community succession and degradation patterns of hydrocarbons in seawater at low temperature
Journal of Hazardous Materials
2018
Heritable components of the human fecal microbiome are associated with visceral fat
Gut Microbes
2018
Intestinal microbiome and its potential functions in bighead carp (Aristichthys nobilis) under different feeding strategies
PeerJ
2018
Updating the 97% identity threshold for 16S ribosomal RNA OTUs
Bioinformatics
2018
Deciphering Endodontic Microbial Communities by Next-generation Sequencing
Journal of Endodontics
2018
Characterization of the Microbiota in Air- or Vacuum-Packed Crisp Grass Carp (Ctenopharyngodon idella C. et V.) Fillets by 16S rRNA PCR–Denaturing Gradient Gel Electrophoresis and High-Throughput Sequencing
Journal of Food Protection
2018
The Microbiome in Rheumatic Diseases and Infection
2018
GeFaST: An improved method for OTU assignment by generalising Swarm’s fastidious clustering approach
BMC Bioinformatics
2018
Metagenomics
2018
Characterization of the salivary microbiome in people with obesity
PeerJ
2018
HmmUFOtu: An HMM and phylogenetic placement based ultra-fast taxonomic assignment and OTU picking tool for microbiome amplicon sequencing studies
Genome Biology
2017
Longitudinal sampling of the lung microbiota in individuals with cystic fibrosis
PLOS ONE
2017
A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis
Microbiome
2017
Moving beyond de novo clustering in fungal community ecology
New Phytologist
2017
Assessment of Common and Emerging Bioinformatics Pipelines for Targeted Metagenomics
PLOS ONE
2017
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
The ISME Journal
2017
From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data
GigaScience
2017
The Protistan Microbiome of Grassland Soil: Diversity in the Mesoscale
Protist
2017
Low abundant soil bacteria can be metabolically versatile and fast growing
Ecology
2017
A clinician's guide to microbiome analysis
Nature Reviews Gastroenterology & Hepatology
2017
DBH: A de Bruijn graph-based heuristic method for clustering large-scale 16S rRNA sequences into OTUs
Journal of Theoretical Biology
2017
Accuracy of microbial community diversity estimated by closed- and open-reference OTUs
PeerJ
2017
Polysaccharides from Chrysanthemum morifolium Ramat ameliorate colitis rats by modulating the intestinal microbiota community
Oncotarget
2017
The gut microbiome composition associates with bipolar disorder and illness severity
Journal of Psychiatric Research
2017
Isolation of Cultivation-Resistant Oomycetes, First Detected as Amplicon Sequences, from Roots of Herbicide-Terminated Winter Rye
Phytobiomes Journal
2017
Gastrointestinal microbial population of turkey (Meleagris gallopavo) affected by hemorrhagic enteritis virus
Poultry Science
2017
DMclust, a Density-based Modularity Method for Accurate OTU Picking of 16S rRNA Sequences
Molecular Informatics
2017
High-resolution characterization of the human microbiome
Translational Research
2017
Comprehensive Molecular Characterization of Bacterial Communities in Feces of Pet Birds Using 16S Marker Sequencing
Microbial Ecology
2017
Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing
Frontiers in Microbiology
2017
Associations between acute gastrointestinal GvHD and the baseline gut microbiota of allogeneic hematopoietic stem cell transplant recipients and donors
Bone Marrow Transplantation
2017
Microbiome sharing between children, livestock and household surfaces in western Kenya
PLOS ONE
2017
OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units
mSphere
2017
PipeCraft: Flexible open-source toolkit for bioinformatics analysis of custom high-throughput amplicon sequencing data
Molecular Ecology Resources
2017
Full Issue PDF
Phytobiomes Journal
2017
The gut microbiome in human neurological disease: A review
Annals of Neurology
2017
Early diverging lineages within Cryptomycota and Chytridiomycota dominate the fungal communities in ice-covered lakes of the McMurdo Dry Valleys, Antarctica
Scientific Reports
2017
Critical Issues in Mycobiota Analysis
Frontiers in Microbiology
2017
ESPRIT-Forest: Parallel clustering of massive amplicon sequence data in subquadratic time
PLOS Computational Biology
2017
Subtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems
Scientific Reports
2017
Characterization of Gut Microbiome Dynamics in Developing Pekin Ducks and Impact of Management System
Frontiers in Microbiology
2017
The Brazilian Microbiome
2017
Effects of intrauterine contraception on the vaginal microbiota
Contraception
2016
Looking for a Signal in the Noise: Revisiting Obesity and the Microbiome
mBio
2016
Deciphering bacterial community changes in zucker diabetic fatty rats based on 16S rRNA gene sequences analysis
Oncotarget
2016
Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing
Applied and Environmental Microbiology
2016
A heritability-based comparison of methods used to cluster 16S rRNA gene sequences into operational taxonomic units
PeerJ
2016
Distinguishing the Signals of Gingivitis and Periodontitis in Supragingival Plaque: a Cross-Sectional Cohort Study in Malawi
Applied and Environmental Microbiology
2016
Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes
FEMS Microbiology Reviews
2016
Open-Source Sequence Clustering Methods Improve the State Of the Art
mSystems
2016
Emerging investigators series: microbial communities in full-scale drinking water distribution systems – a meta-analysis
Environmental Science: Water Research & Technology
2016
Application of a Database-Independent Approach To Assess the Quality of Operational Taxonomic Unit Picking Methods
mSystems
2016
16S rRNA Amplicon Sequencing for Epidemiological Surveys of Bacteria in Wildlife
mSystems
2016
Suddenly everyone is a microbiota specialist
Clinical Microbiology and Infection
2016
Experimental design considerations in microbiota/inflammation studies
Clinical & Translational Immunology
2016
Status of the Archaeal and Bacterial Census: an Update
mBio
2016
VSEARCH: a versatile open source tool for metagenomics
PeerJ
2016
Structural and functional changes within the gut microbiota and susceptibility to Clostridium difficile infection
Anaerobe
Additional cited-by details will be shown when available from Crossref