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2025	TNFR‐LSTM: A Deep Intelligent Model for Identification of Tumour Necroses Factor Receptor (TNFR) Activity IET Systems Biology Faisal Binzagr, Ansar Naseem, Muhammad Umer Farooq, Nashwan Alromema
2025	DHUpredET: A comparative computational approach for identification of dihydrouridine modification sites in RNA sequence Analytical Biochemistry Md Fahim Sultan, Tasmin Karim, Md Shazzad Hossain Shaon, Sayed Mehedi Azim, Iman Dehzangi, Mst Shapna Akter, Sobhy M. Ibrahim, Md Mamun Ali, Kawsar Ahmed, Francis M. Bui
2025	PADG‐Pred: Exploring Ensemble Approaches for Identifying Parkinson's Disease Associated Biomarkers Using Genomic Sequences Analysis IET Systems Biology Ayesha Karim, Tamim Alkhalifah, Fahad Alturise, Yaser Daanial Khan
2025	Diaproteo: A supervised learning framework for early detection of diabetes mellitus based on proteomic profiles DIGITAL HEALTH Hamza Shahab Awan, Fahad Alturise, Tamim Alkhalifah, Yaser Daanial Khan
2025	Artificial Intelligence for Molecular Biology Muhammad Nabeel Asim, Sheraz Ahmed, Andreas Dengel
2025	PhageVir: An evaluation of computational intelligence models for the precise identification of phage virion proteins International Journal of ADVANCED AND APPLIED SCIENCES Nashwan Alromema, Hussnain Arshad, Sharaf J. Malebary, Faisal Binzagr, Yaser Daanial Khan
2024	iDLB-Pred: identification of disordered lipid binding residues in protein sequences using convolutional neural network Scientific Reports Sharaf J. Malebary, Nashwan Alromema
2024	m5c-iDeep: 5-Methylcytosine sites identification through deep learning Methods Sharaf J. Malebary, Nashwan Alromema, Muhammad Taseer Suleman, Maham Saleem
2024	Stack-DHUpred: Advancing the accuracy of dihydrouridine modification sites detection via stacking approach Computers in Biology and Medicine Md. Harun-Or-Roshid, Kazuhiro Maeda, Le Thi Phan, Balachandran Manavalan, Hiroyuki Kurata
2024	m5c-iEnsem: 5-methylcytosine sites identification through ensemble models Bioinformatics Anas Bilal, Fawaz Khaled Alarfaj, Rafaqat Alam Khan, Muhammad Taseer Suleman, Haixia Long
2024	m1A-Ensem: accurate identification of 1-methyladenosine sites through ensemble models BioData Mining Muhammad Taseer Suleman, Fahad Alturise, Tamim Alkhalifah, Yaser Daanial Khan
2022	RCCC_Pred: A Novel Method for Sequence-Based Identification of Renal Clear Cell Carcinoma Genes through DNA Mutations and a Blend of Features Diagnostics Arfa Hassan, Tamim Alkhalifah, Fahad Alturise, Yaser Khan