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2025
Phylogenetic Diversity and Geographic Distribution of Atlantic Salmon Calicivirus in Major Salmon Farming Regions
Journal of Fish Diseases
2025
AliMarko: A Pipeline for Virus Identification Using an Expert-Guided Approach
Viruses
2025
From sewage to genomes: Expanding our understanding of the urban and semi-urban wastewater RNA virome
Environmental Research
2025
Beneath the surface: Unsolved questions in soil virus ecology
Soil Biology and Biochemistry
2025
A positive-sense single-stranded RNA virus acquired a negative-sense open reading frame through recombination
PLOS Pathogens
2025
Cameroonian blackflies (Diptera: Simuliidae) harbour a plethora of RNA viruses
Virus Evolution
2025
Viral replication modulated by hallmark conformational ensembles: how AlphaFold-predicted features of RdRp folding dynamics combined with intrinsic disorder-mediated function enable RNA virus discovery
Frontiers in Virology
2025
Detection of viral sequences at single-cell resolution identifies novel viruses associated with host gene expression changes
Nature Biotechnology
2025
Uncovering the hidden RNA virus diversity in Lake Nam Co: Evolutionary insights from an extreme high-altitude environment
Proceedings of the National Academy of Sciences
2025
Limited diversity of bat-associated RNA viruses in endangered and geographically isolated Christmas Island flying foxes
One Health
2025
A group of segmented viruses contains genome segments sharing homology with multiple viral taxa
Journal of Virology
2025
Phosphate amendment drives bloom of RNA viruses after soil wet-up
Soil Biology and Biochemistry
2024
A comprehensive RNA virome identified in the oyster Magallana gigas reveals the intricate network of virus sharing between seawater and mollusks
Microbiome
2024
Host species and geography impact bee-associated RNA virus communities with evidence for isolation by distance in viral populations
ISME Communications
2024
Exploring the hidden world of RNA viruses with a transformer-based tool
Patterns
2024
NeoRdRp2 with improved seed data, annotations, and scoring
Frontiers in Virology
2024
Recent evolutionary origin and localized diversity hotspots of mammalian coronaviruses
eLife
2024
Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities
Frontiers in Virology
2024
Recent evolutionary origin and localized diversity hotspots of mammalian coronaviruses
eLife
2024
Transmission of mycoviruses: new possibilities
Frontiers in Microbiology
2024
Analysis of the genetic diversity in RNA-directed RNA polymerase sequences: implications for an automated RNA virus classification system
Virus Evolution
2024
A parasite odyssey: An RNA virus concealed in Toxoplasma gondii
Virus Evolution
2024
Discovery of novel and known viruses associated with toxigenic and non-toxigenic bloom forming diatoms from the Northern Adriatic Sea
Harmful Algae
2024
Using artificial intelligence to document the hidden RNA virosphere
Cell
2024
VirID: Beyond Virus Discovery—An Integrated Platform for Comprehensive RNA Virus Characterization
Molecular Biology and Evolution
2023
Viral community composition of hypersaline lakes
Virus Evolution
2023
Exploring the Potential of GANs in Biological Sequence Analysis
Biology
2023
Known phyla dominate the Tara Oceans RNA virome
Virus Evolution
2023
Evidence for an ancient aquatic origin of the RNA viral order Articulavirales
Proceedings of the National Academy of Sciences
2023
Identification of RNA Virus–Derived RdRp Sequences in Publicly Available Transcriptomic Data Sets
Molecular Biology and Evolution
2023
Hybrids of RNA viruses and viroid-like elements replicate in fungi
Nature Communications
2023
Transcriptome mining extends the host range of the Flaviviridae to non-bilaterians
Virus Evolution
2023
Current trends inRNAvirus detection through metatranscriptome sequencing data
FEBS Open Bio
2022
Muscle5: High-accuracy alignment ensembles enable unbiased assessments of sequence homology and phylogeny
Nature Communications
2022
An Unwanted Association: The Threat to Papaya Crops by a Novel Potexvirus in Northwest Argentina
Viruses
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