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2025	Running against the clock: exploring microbial diversity in an extremely endangered microbial oasis in the Chihuahuan Desert FEMS Microbiology Ecology Ulises E Rodriguez-Cruz, Manuel Ochoa-Sánchez, Luis E Eguiarte, Valeria Souza
2024	Metagenomic insight into taxonomic composition, environmental filtering and functional redundancy for shaping worldwide modern non-lithifying microbial mats PeerJ Mariette Viladomat Jasso, Manuel García-Ulloa, Icoquih Zapata-Peñasco, Luis E. Eguiarte, Valeria Souza
2024	Comparative evaluation of bioinformatic tools for virus-host prediction and their application to a highly diverse community in the Cuatro Ciénegas Basin, Mexico PLOS ONE Alejandro Miguel Cisneros-Martínez, Ulises E. Rodriguez-Cruz, Luis D. Alcaraz, Arturo Becerra, Luis E. Eguiarte, Valeria Souza
2024	Uncovering novel bacterial and archaeal diversity: genomic insights from metagenome-assembled genomes in Cuatro Cienegas, Coahuila Frontiers in Microbiology Ulises E. Rodríguez-Cruz, Hugo G. Castelán-Sánchez, David Madrigal-Trejo, Luis E. Eguiarte, Valeria Souza
2024	Metabolomic Diversity in Microbial Mats Under Different Environmental Conditions: A Tool to Test Microbial Ecosystem Chemical Change Chemistry & Biodiversity Jhoselinne Buenrostro‐Muñoz, Scott A. Jarmusch, Valeria Souza, Anahí Martínez‐Cárdenas, Carlos A. Fajardo‐Hernández, Itzel R. Yeverino, Luis E. Eguiarte, Mario Figueroa
2023	Extraordinary concentrations of local endemism associated with arid-land springs Frontiers in Environmental Science Roderick J. Fensham, Winston F. Ponder, Valeria Souza, Lawrence E. Stevens
2023	Alkali-Resistant Filamentous Fungi of the Coastal Zone of the Dauria Saline Lakes Contemporary Problems of Ecology M. L. Georgieva, S. A. Bondarenko, N. N. Markelova, E. N. Bilanenko
2023	Disentangling a metabolic cross-feeding in a halophilic archaea-bacteria consortium Frontiers in Microbiology Nahui Olin Medina-Chávez, Abigail Torres-Cerda, Jeremy M. Chacón, William R. Harcombe, Susana De la Torre-Zavala, Michael Travisano
2023	A Metagenomic Time-Series Approach to Assess the Ecological Stability of Microbial Mats in a Seasonally Fluctuating Environment Microbial Ecology David Madrigal-Trejo, Jazmín Sánchez-Pérez, Laura Espinosa-Asuar, Jorge A. Valdivia-Anistro, Luis E. Eguiarte, Valeria Souza
2023	Metagenomic comparisons reveal a highly diverse and unique viral community in a seasonally fluctuating hypersaline microbial mat Microbial Genomics Alejandro Miguel Cisneros-Martínez, Luis E. Eguiarte, Valeria Souza
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