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2025	Novel natural vector with asymmetric covariance for classifying biological sequences Gene Guoqing Hu, Tao Zhou, Piyu Zhou, Stephen Shing-Toung Yau
2025	Energy entropy vector: a novel approach for efficient microbial genomic sequence analysis and classification Briefings in Bioinformatics Hao Wang, Guoqing Hu, Stephen S-T Yau
2025	Overview and Prospects of DNA Sequence Visualization International Journal of Molecular Sciences Yan Wu, Xiaojun Xie, Jihong Zhu, Lixin Guan, Mengshan Li
2024	MANOCCA: a robust and computationally efficient test of covariance in high-dimension multivariate omics data Briefings in Bioinformatics Christophe Boetto, Arthur Frouin, Léo Henches, Antoine Auvergne, Yuka Suzuki, Etienne Patin, Marius Bredon, Alec Chiu, Milieu Interieur Consortium, Sriram Sankararaman, Noah Zaitlen, Sean P Kennedy, Lluis Quintana-Murci, Darragh Duffy, Harry Sokol, Hugues Aschard
2024	Investigating alignment-free machine learning methods for HIV-1 subtype classification Bioinformatics Advances Kaitlyn E Wade, Lianghong Chen, Chutong Deng, Gen Zhou, Pingzhao Hu
2024	A Novel Natural Graph for Efficient Clustering of Virus Genome Sequences Current Bioinformatics Harris Song, Nan Sun, Wenping Yu, Stephen S.-T. Yau
2022	In-depth investigation of the point mutation pattern of HIV-1 Frontiers in Cellular and Infection Microbiology Nan Sun, Stephen S.-T. Yau