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2025	Deep learning in microbiome analysis: a comprehensive review of neural network models Frontiers in Microbiology Piotr Przymus, Krzysztof Rykaczewski, Adrián Martín-Segura, Jaak Truu, Enrique Carrillo De Santa Pau, Mikhail Kolev, Irina Naskinova, Aleksandra Gruca, Alexia Sampri, Marcus Frohme, Alina Nechyporenko
2025	Exploring deep learning in phage discovery and characterization Virology Monyque Karoline de Paula Silva, Vitória Yumi Uetuki Nicoleti, Barbara da Paixão Perez Rodrigues, Ademir Sergio Ferreira Araujo, Joel Henrique Ellwanger, James Moraes de Almeida, Leandro Nascimento Lemos
2024	Deep learning methods in metagenomics: a review Microbial Genomics Gaspar Roy, Edi Prifti, Eugeni Belda, Jean-Daniel Zucker
2024	Proceedings of the 2024 13th International Conference on Computing and Pattern Recognition Lu Jin, Li Deng, Yiding Zhou, Haoyi Tang
2023	SaPt-CNN-LSTM-AR-EA: a hybrid ensemble learning framework for time series-based multivariate DNA sequence prediction PeerJ Wu Yan, Li Tan, Li Meng-Shan, Sheng Sheng, Wang Jun, Wu Fu-an
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