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2025
VITALdb: to select the best viroinformatics tools for a desired virus or application
Briefings in Bioinformatics
2025
Genomic, socio-environmental, and sequencing capability patterns in the surveillance of SARS-CoV-2 in Latin America and the Caribbean up to 2023
Scientific Reports
2025
PathoSeq-QC: a decision support bioinformatics workflow for robust genomic surveillance
Bioinformatics
2024
Lessons learned: overcoming common challenges in reconstructing the SARS-CoV-2 genome from short-read sequencing data via CoVpipe2
F1000Research
2024
SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL), a Snakemate workflow for rapid and bulk analysis of Illumina sequencing of SARS-CoV-2 genomes
NAR Genomics and Bioinformatics
2023
Transmission dynamics of SARS-CoV-2 variants in the Brazilian state of Pará
Frontiers in Public Health
2023
Mutational Analysis of Circulating Omicron SARS-CoV-2 Lineages in the Al-Baha Region of Saudi Arabia
Journal of Multidisciplinary Healthcare
2023
Lessons learned: overcoming common challenges in reconstructing the SARS-CoV-2 genome from short-read sequencing data via CoVpipe2
F1000Research
2023
Overview of the SARS-CoV-2 genotypes circulating in Latin America during 2021
Frontiers in Public Health
2022
Sierra SARS-CoV-2 sequence and antiviral resistance analysis program
Journal of Clinical Virology
2022
Advanced Molecular and Immunological Diagnostic Methods to Detect SARS-CoV-2 Infection
Microorganisms
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