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2021	Advances in Experimental Medicine and Biology Diego Mauricio Riaño-Pachón, Hector Fabio Espitia-Navarro, John Jaime Riascos, Gabriel Rodrigues Alves Margarido
2021	Improving the quality of barley transcriptome <i>de novo</i> assembling by using a hybrid approach for lines with varying spike and stem coloration Vavilov Journal of Genetics and Breeding N. A. Shmakov
2020	Hardware Performance Evaluation of De novo Transcriptome Assembly Software in Amazon Elastic Compute Cloud Current Bioinformatics Fernando Mora-Márquez, José Luis Vázquez-Poletti, Víctor Chano, Carmen Collada, Álvaro Soto, Unai López de Heredia
2019	Extension of Partial Gene Transcripts by Iterative Mapping of RNA-Seq Raw Reads IEEE/ACM Transactions on Computational Biology and Bioinformatics Kumar Saurabh Singh, Bartlomiej J. Troczka, Katherine Beadle, Linda M. Field, T. G. Emyr Davies, Martin S. Williamson, Ralf Nauen, Chris Bass
2019	Unravelling the molecular mechanisms of nickel in woodlice. Environmental Research Nuno G.C. Ferreira, Rui G. Morgado, Luís Cunha, Marta Novo, Amadeu M.V.M. Soares, Andrew J. Morgan, Susana Loureiro, Peter Kille
2019	Effector mining from the Erysiphe pisi haustorial transcriptome identifies novel candidates involved in pea powdery mildew pathogenesis Molecular Plant Pathology Gunjan Sharma, Raghavendra Aminedi, Divya Saxena, Arunima Gupta, Priyajit Banerjee, Deepti Jain, Divya Chandran
2018	De novo transcriptome assembly and its annotation for the black ant Formica fusca at the larval stage Scientific Data Claire Morandin, Unni Pulliainen, Nick Bos, Eva Schultner
2017	Expression of eukaryotic‐like protein in the microbiome of sponges Molecular Ecology C. Díez‐Vives, L. Moitinho‐Silva, S. Nielsen, D. Reynolds, T. Thomas
2017	Challenges and advances for transcriptome assembly in non-model species PLOS ONE Arnaud Ungaro, Nicolas Pech, Jean-François Martin, R. J. Scott McCairns, Jean-Philippe Mévy, Rémi Chappaz, André Gilles
2017	A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the chicken model Biology Open Mickael Orgeur, Marvin Martens, Stefan T. Börno, Bernd Timmermann, Delphine Duprez, Sigmar Stricker
2017	Applications of RNA-Seq and Omics Strategies - From Microorganisms to Human Health Michele Araújo Pereira, Eddie Luidy Imada, Rafael Lucas Muniz Guedes
2016	Single-cell TCRseq: paired recovery of entire T-cell alpha and beta chain transcripts in T-cell receptors from single-cell RNAseq Genome Medicine David Redmond, Asaf Poran, Olivier Elemento
2016	Transcriptome analysis reveals differentially expressed genes associated with germ cell and gonad development in the Southern bluefin tuna (Thunnus maccoyii) BMC Genomics Ido Bar, Scott Cummins, Abigail Elizur
2016	dbHT-Trans: An Efficient Tool for Filtering the Protein-Encoding Transcripts Assembled by RNA-Seq According to Search for Homologous Proteins Journal of Computational Biology Feilong Deng, Shi-Yi Chen
2015	TRUFA: A User-Friendly Web Server for de novo RNA-seq Analysis Using Cluster Computing Evolutionary Bioinformatics Etienne Kornobis, Luis Cabellos, Fernando Aguilar, Cristina Frías-López, Julio Rozas, Jesús Marco, Rafael Zardoya
2015	First insights into the giant panda (Ailuropoda melanoleuca) blood transcriptome: a resource for novel gene loci and immunogenetics Molecular Ecology Resources Lianming Du, Wujiao Li, Zhenxin Fan, Fujun Shen, Mingyu Yang, Zili Wang, Zuoyi Jian, Rong Hou, Bisong Yue, Xiuyue Zhang
2015	Genomics of Adaptation to Multiple Concurrent Stresses: Insights from Comparative Transcriptomics of a Cichlid Fish from One of Earth’s Most Extreme Environments, the Hypersaline Soda Lake Magadi in Kenya, East Africa Journal of Molecular Evolution Geraldine D. Kavembe, Paolo Franchini, Iker Irisarri, Gonzalo Machado-Schiaffino, Axel Meyer
2014	Metabolic Modeling of CommonEscherichia coliStrains in Human Gut Microbiome BioMed Research International Yue-Dong Gao, Yuqi Zhao, Jingfei Huang
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