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2025	COCαDA - a fast and scalable algorithm for interatomic contact detection in proteins using Cα distance matrices Frontiers in Bioinformatics Rafael Pereira Lemos, Diego Mariano, Sabrina De Azevedo Silveira, Raquel C. de Melo-Minardi
2024	The Role of Structural Bioinformatics in Understanding Tumor Necrosis Factor α-Interacting Protein Mechanisms in Chronic Inflammatory Diseases: A Review Immuno Luana Luiza Bastos, Diego Mariano, Rafael Pereira Lemos, Tatiane Senna Bialves, Carlo Jose Freire Oliveira, Raquel C. de Melo-Minardi
2024	Features, Transmission, Detection, and Case Studies in COVID-19 Eduardo U.M. Moreira, Diego C.B. Mariano, Raquel C. de Melo-Minardi
2024	Binding affinity between coronavirus spike protein and human ACE2 receptor Computational and Structural Biotechnology Journal Marcus Ho-Hin Shum, Yang Lee, Leighton Tam, Hui Xia, Oscar Lung-Wa Chung, Zhihong Guo, Tommy Tsan-Yuk Lam
2023	Lecture Notes in Computer Science Frederico Carvalho, Diego Mariano, Marcos Bomfim, Giovana Fiorini, Luana Bastos, Ana Paula Abreu, Vivian Paixão, Lucas Santos, Juliana Silva, Angie Puelles, Alessandra Silva, Raquel Cardoso de Melo-Minardi