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2025	DIAMOND2GO: rapid Gene Ontology assignment and enrichment detection for functional genomics Frontiers in Bioinformatics Christopher Golden, David J. Studholme, Rhys A. Farrer
2025	Methods in Molecular Biology Maxat Kulmanov, Robert Hoehndorf
2024	2024 Asia Pacific Conference on Innovation in Technology (APCIT) M. Bharaneedharan, Harini P, Keerthana S, Parameswari E, Gowtham K, John Wesley S
2024	POLAT: Protein function prediction based on soft mask graph network and residue-Label ATtention Computational Biology and Chemistry Yang Liu, Yi Zhang, ZiHao Chen, Jing Peng
2023	In silico protein function prediction: the rise of machine learning-based approaches Medical Review Jiaxiao Chen, Zhonghui Gu, Luhua Lai, Jianfeng Pei
2023	An exhaustive review of computational prediction techniques for PPI sites, protein locations, and protein functions Network Modeling Analysis in Health Informatics and Bioinformatics Prajna Bhat, Nagamma Patil
2023	A systematic review of state-of-the-art strategies for machine learning-based protein function prediction Computers in Biology and Medicine Tian-Ci Yan, Zi-Xuan Yue, Hong-Quan Xu, Yu-Hong Liu, Yan-Feng Hong, Gong-Xing Chen, Lin Tao, Tian Xie
2022	Eusocial Transition in Blattodea: Transposable Elements and Shifts of Gene Expression Genes Juliette Berger, Frédéric Legendre, Kevin-Markus Zelosko, Mark C. Harrison, Philippe Grandcolas, Erich Bornberg-Bauer, Bertrand Fouks
2022	CrowdGO: Machine learning and semantic similarity guided consensus Gene Ontology annotation PLOS Computational Biology Maarten J. M. F. Reijnders, Robert M. Waterhouse
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