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2025	Wastewater Metavirome Diversity: Exploring Replicate Inconsistencies and Bioinformatic Tool Disparities International Journal of Environmental Research and Public Health André F. B. Santos, Mónica Nunes, Andreia Filipa-Silva, Victor Pimentel, Marta Pingarilho, Patrícia Abrantes, Mafalda N. S. Miranda, Maria Teresa Barreto Crespo, Ana B. Abecasis, Ricardo Parreira, Sofia G. Seabra
2025	Evaluation of the taxonomic classification tools and visualizers for metagenomic analysis using the Oxford nanopore sequence database Journal of Applied Genetics Abraam S. Bebawy, Bishoy T. Saad, Mina T. Saad, Gamal S. Mosaad, Fatma Alzahraa M. Gomaa, Mohammad Y. Alshahrani, Khaled M. Aboshanab
2024	Filtering out the noise: metagenomic classifiers optimize ancient DNA mapping Briefings in Bioinformatics Shyamsundar Ravishankar, Vilma Perez, Roberta Davidson, Xavier Roca-Rada, Divon Lan, Yassine Souilmi, Bastien Llamas
2024	Impact of database choice and confidence score on the performance of taxonomic classification using Kraken2 aBIOTECH Yunlong Liu, Morteza H. Ghaffari, Tao Ma, Yan Tu
2024
2023	Benchmarking Metagenomic Classifiers on Simulated Ancient and Modern Metagenomic Data Microorganisms Vaidehi Pusadkar, Rajeev K. Azad
2023	Metagenomic Analysis of Primary Clinical Samples of Sheep Pox to Detect Sheep Pox Virus and De Novo Virus Genome Assembly Nanobiotechnology Reports D. A. Kwon, E. D. Ryabinkin
2022	Detection of Ancient Viruses and Long-Term Viral Evolution Viruses Luca Nishimura, Naoko Fujito, Ryota Sugimoto, Ituro Inoue
2022	A Case Study for the Recovery of Authentic Microbial Ancient DNA from Soil Samples Microorganisms Vilma Pérez, Yichen Liu, Martha B. Hengst, Laura S. Weyrich
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