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2025	PhageVir: An evaluation of computational intelligence models for the precise identification of phage virion proteins International Journal of ADVANCED AND APPLIED SCIENCES Nashwan Alromema, Hussnain Arshad, Sharaf J. Malebary, Faisal Binzagr, Yaser Daanial Khan
2025	TNFR‐LSTM: A Deep Intelligent Model for Identification of Tumour Necroses Factor Receptor (TNFR) Activity IET Systems Biology Faisal Binzagr, Ansar Naseem, Muhammad Umer Farooq, Nashwan Alromema
2024	m1A-Ensem: accurate identification of 1-methyladenosine sites through ensemble models BioData Mining Muhammad Taseer Suleman, Fahad Alturise, Tamim Alkhalifah, Yaser Daanial Khan
2024	AdaptorPro:A Deep Learning Approach for Accurate Identification of Adaptor Proteins VFAST Transactions on Software Engineering Waqas Ahmed, Sibgha Rauf, Nosheen Sabahat
2024	iDLB-Pred: identification of disordered lipid binding residues in protein sequences using convolutional neural network Scientific Reports Sharaf J. Malebary, Nashwan Alromema
2024	Gluconeogenesis unraveled: A proteomic Odyssey with machine learning Methods Seher Ansar Khawaja, Fahad Alturise, Tamim Alkhalifah, Sher Afzal Khan, Yaser Daanial Khan
2024	Identification of 6-methyladenosine sites using novel feature encoding methods and ensemble models Scientific Reports Nashwan Alromema, Muhammad Taseer Suleman, Sharaf J. Malebary, Amir Ahmed, Bandar Ali Mohammed Al-Rami Al-Ghamdi, Yaser Daanial Khan
2024	DeepO-GlcNAc: a web server for prediction of protein O-GlcNAcylation sites using deep learning combined with attention mechanism Frontiers in Cell and Developmental Biology Liyuan Zhang, Tingzhi Deng, Shuijing Pan, Minghui Zhang, Yusen Zhang, Chunhua Yang, Xiaoyong Yang, Geng Tian, Jia Mi
2024	SumoPred-PLM: human SUMOylation and SUMO2/3 sites Prediction using Pre-trained Protein Language Model NAR Genomics and Bioinformatics Andrew Vargas Palacios, Pujan Acharya, Anthony Stephen Peidl, Moriah Rene Beck, Eduardo Blanco, Avdesh Mishra, Tasneem Bawa-Khalfe, Subash Chandra Pakhrin
2024	ESM-BBB-Pred: a fine-tuned ESM 2.0 and deep neural networks for the identification of blood–brain barrier peptides Briefings in Bioinformatics Ansar Naseem, Fahad Alturise, Tamim Alkhalifah, Yaser Daanial Khan
2024	iSUMO-RsFPN: A predictor for identifying lysine SUMOylation sites based on multi-features and feature pyramid networks Analytical Biochemistry Zhe Lv, Xin Wei, Siqin Hu, Gang Lin, Wangren Qiu
2024	An intelligent model for prediction of abiotic stress-responsive microRNAs in plants using statistical moments based features and ensemble approaches Methods Ansar Naseem, Yaser Daanial Khan
2024	FNeXter: A Multi-Scale Feature Fusion Network Based on ConvNeXt and Transformer for Retinal OCT Fluid Segmentation Sensors Zhiyuan Niu, Zhuo Deng, Weihao Gao, Shurui Bai, Zheng Gong, Chucheng Chen, Fuju Rong, Fang Li, Lan Ma
2023	BBB-PEP-prediction: improved computational model for identification of blood–brain barrier peptides using blending position relative composition specific features and ensemble modeling Journal of Cheminformatics Ansar Naseem, Fahad Alturise, Tamim Alkhalifah, Yaser Daanial Khan
2023	Ensemble Learning for Hormone Binding Protein Prediction: A Promising Approach for Early Diagnosis of Thyroid Hormone Disorders in Serum Diagnostics Ahmad Hassan Butt, Tamim Alkhalifah, Fahad Alturise, Yaser Daanial Khan
2023	Lecture Notes in Networks and Systems Thi-Xuan Tran, Van-Nui Nguyen, Nguyen Quoc Khanh Le
2023	A Framework for Prediction of Oncogenomic Progression Aiding Personalized Treatment of Gastric Cancer Diagnostics Fahad M. Alotaibi, Yaser Daanial Khan
2023	Emerging trends in post-translational modification: Shedding light on Glioblastoma multiforme Biochimica et Biophysica Acta (BBA) - Reviews on Cancer Smita Kumari, Rohan Gupta, Rashmi K. Ambasta, Pravir Kumar
2023	An application of topological data analysis in predicting sumoylation sites PeerJ Xiaoxi Lin, Yaru Gao, Fengchun Lei
2023	PseU-Pred: An ensemble model for accurate identification of pseudouridine sites Analytical Biochemistry Muhammad Taseer Suleman, Yaser Daanial Khan
2023	iDHU-Ensem: Identification of dihydrouridine sites through ensemble learning models DIGITAL HEALTH Muhammad Taseer Suleman, Fahad Alturise, Tamim Alkhalifah, Yaser Daanial Khan
2022	A comprehensive tool for accurate identification of methyl-Glutamine sites Journal of Molecular Graphics and Modelling Sharaf J. Malebary, Ebraheem Alzahrani, Yaser Daanial Khan
2022	ResSUMO: A Deep Learning Architecture Based on Residual Structure for Prediction of Lysine SUMOylation Sites Cells Yafei Zhu, Yuhai Liu, Yu Chen, Lei Li
2022	A machine learning technique for identifying DNA enhancer regions utilizing CIS-regulatory element patterns Scientific Reports Ahmad Hassan Butt, Tamim Alkhalifah, Fahad Alturise, Yaser Daanial Khan
2022	LBCEPred: a machine learning model to predict linear B-cell epitopes Briefings in Bioinformatics Wajdi Alghamdi, Muhammad Attique, Ebraheem Alzahrani, Malik Zaka Ullah, Yaser Daanial Khan
2022	RCCC_Pred: A Novel Method for Sequence-Based Identification of Renal Clear Cell Carcinoma Genes through DNA Mutations and a Blend of Features Diagnostics Arfa Hassan, Tamim Alkhalifah, Fahad Alturise, Yaser Khan
2022	Evaluation of deep learning techniques for identification of sarcoma-causing carcinogenic mutations DIGITAL HEALTH Asghar Ali Shah, Fahad Alturise, Tamim Alkhalifah, Yaser Daanial Khan
2021	A Technique for Prediction Cytokines based On Statistical Moments and a Random Forest Classifier VFAST Transactions on Software Engineering Adeel Ashraf, Rana Ali Rza Ashraf
2021	2021 International Conference on Innovative Computing (ICIC) Haider Ali Baig, Amna Arshad, Ahsan Raza
2021	Prediction of Allergen and Non-Allergen Proteins Sequence via Chou's 5-Step Rule VFAST Transactions on Software Engineering Sumbal Nawaz, Kalsoom Fatima, Adeel Ashraf
2021	2021 International Conference on Innovative Computing (ICIC) Muhammad Taseer Suleman
2021	2021 International Conference on Innovative Computing (ICIC) Anam Sana, Seher Ansar Khawaja, Muhammad Farooq
2021	Computational Identification of Lungs Cancer Causing Genes by Machine Learning (Ml) Classifiers VFAST Transactions on Software Engineering Muntaha Saleem, Muhammad Sohaib Akram, Seher Ansar Khawaja
2021	2021 International Conference on Innovative Computing (ICIC) Rana M. Nadir, Hafsa Mateen, Saif U Din
2021	2021 International Conference on Innovative Computing (ICIC) Muhammad Taseer Suleman
2021	Identifying Key Genes of Liver Cancer by Using Random Forest Classification VFAST Transactions on Software Engineering Adeel Ashraf, Muhammad Sohaib Roomi, Muhammad Sohaib Akram
2021	Diagnosis of Alzheimer’s Disease using Comparative Study on Machine Learning Models VFAST Transactions on Software Engineering Ghulam Zohra, Muhammad Sohaib Akram, Saif ud Din
2021	2021 International Conference on Innovative Computing (ICIC) Muhammad Abdullah, Seher Ansar Khawaja, Muhammad Farooq
2021	2021 International Conference on Innovative Computing (ICIC) Jabar Saleem, Amna Arsahd
2021	Protein Carbonylation Sites Prediction using Biomarkers of Oxidative Stress in Various Human Diseases: A Systematic Literature Review VFAST Transactions on Software Engineering Adeel Ashraf, Anam Shahzadi, Muhammad Sohaib Akram
2021	2021 International Conference on Innovative Computing (ICIC) Sania Srhar, Amna Arshad, Ahsan Raza
2021	Bladder And Kidney Cancer Genome Classification Using Neural Network VFAST Transactions on Software Engineering Tanzeel Sultan Rana, Adeel Ashraf
2021	2021 International Conference on Innovative Computing (ICIC) Syed Muhammad Shehryar, Muhammad Ammar Shahid, Asghar Ali Shah
2021	2021 International Conference on Innovative Computing (ICIC) Zareen Kalim, Amna Arshad
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