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2025	A Hybrid Sequential Feature Selection Approach for Identifying New Potential mRNA Biomarkers for Usher Syndrome Using Machine Learning Biomolecules Rama Krishna Thelagathoti, Wesley A. Tom, Dinesh S. Chandel, Chao Jiang, Gary Krzyzanowski, Appolinaire Olou, M. Rohan Fernando
2025	Editorial: Integrative genetics and multi-omics of complex human disorders Frontiers in Genetics Hongsheng Gui, Christopher J. Lessard, Jinhui Liu, Miaoxin Li, Indra Adrianto
2025	RCE-IFE: recursive cluster elimination with intra-cluster feature elimination PeerJ Computer Science Cihan Kuzudisli, Burcu Bakir-Gungor, Bahjat Qaqish, Malik Yousef
2024	Topic selection for text classification using ensemble topic modeling with grouping, scoring, and modeling approach Scientific Reports Daniel Voskergian, Rashid Jayousi, Malik Yousef
2024	CCPred: Global and population-specific colorectal cancer prediction and metagenomic biomarker identification at different molecular levels using machine learning techniques Computers in Biology and Medicine Burcu Bakir-Gungor, Mustafa Temiz, Yasin Inal, Emre Cicekyurt, Malik Yousef
2024	2024 32nd Signal Processing and Communications Applications Conference (SIU) Emma Qumsiyeh, Burcu Bakir-Gungor, Malik Yousef
2024	2024 32nd Signal Processing and Communications Applications Conference (SIU) Nur Sebnem Ersoz, Cihan Kuzudisli, Malik Yousef, Burcu Bakir-Gungor
2024	Machine Learning Strategies in MicroRNA Research: Bridging Genome to Phenome OMICS: A Journal of Integrative Biology Sonet Daniel Thomas, Krithika Vijayakumar, Levin John, Deepak Krishnan, Niyas Rehman, Amjesh Revikumar, Jalaluddin Akbar Kandel Codi, Thottethodi Subrahmanya Keshava Prasad, Vinodchandra S.S., Rajesh Raju
2024	A miRNA-disease association prediction model based on tree-path global feature extraction and fully connected artificial neural network with multi-head self-attention mechanism BMC Cancer Hou Biyu, Li Mengshan, Hou Yuxin, Zeng Ming, Wang Nan, Guan Lixin
2024	Enhanced TextNetTopics for Text Classification Using the G-S-M Approach with Filtered fastText-Based LDA Topics and RF-Based Topic Scoring: fasTNT Applied Sciences Daniel Voskergian, Rashid Jayousi, Malik Yousef
2023	PriPath: identifying dysregulated pathways from differential gene expression via grouping, scoring, and modeling with an embedded feature selection approach BMC Bioinformatics Malik Yousef, Fatma Ozdemir, Amhar Jaber, Jens Allmer, Burcu Bakir-Gungor
2023	2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Miray Unlu Yazici, J. S. Marron, Burcu Bakir-Gungor, Malik Yousef
2023	GeNetOntology: identifying affected gene ontology terms via grouping, scoring, and modeling of gene expression data utilizing biological knowledge-based machine learning Frontiers in Genetics Nur Sebnem Ersoz, Burcu Bakir-Gungor, Malik Yousef
2023	AMP-GSM: Prediction of Antimicrobial Peptides via a Grouping–Scoring–Modeling Approach Applied Sciences Ümmü Gülsüm Söylemez, Malik Yousef, Burcu Bakir-Gungor
2023	microBiomeGSM: the identification of taxonomic biomarkers from metagenomic data using grouping, scoring and modeling (G-S-M) approach Frontiers in Microbiology Burcu Bakir-Gungor, Mustafa Temiz, Amhar Jabeer, Di Wu, Malik Yousef
2023	miRdisNET: Discovering microRNA biomarkers that are associated with diseases utilizing biological knowledge-based machine learning Frontiers in Genetics Amhar Jabeer, Mustafa Temiz, Burcu Bakir-Gungor, Malik Yousef
2023	Invention of 3Mint for feature grouping and scoring in multi-omics Frontiers in Genetics Miray Unlu Yazici, J. S. Marron, Burcu Bakir-Gungor, Fei Zou, Malik Yousef
2023	Review of feature selection approaches based on grouping of features PeerJ Cihan Kuzudisli, Burcu Bakir-Gungor, Nurten Bulut, Bahjat Qaqish, Malik Yousef
2023	TextNetTopics Pro, a topic model-based text classification for short text by integration of semantic and document-topic distribution information Frontiers in Genetics Daniel Voskergian, Burcu Bakir-Gungor, Malik Yousef
2023	miRGediNET: A comprehensive examination of common genes in miRNA-Target interactions and disease associations: Insights from a grouping-scoring-modeling approach Heliyon Emma Qumsiyeh, Zaidoun Salah, Malik Yousef
2022	TextNetTopics: Text Classification Based Word Grouping as Topics and Topics’ Scoring Frontiers in Genetics Malik Yousef, Daniel Voskergian
2022	GediNET for discovering gene associations across diseases using knowledge based machine learning approach Scientific Reports Emma Qumsiyeh, Louise Showe, Malik Yousef
2022	Studies in Computational Intelligence Fatima Nazish Khan, Malik Yousef, Khalid Raza
2022	Inflammatory bowel disease biomarkers of human gut microbiota selected via different feature selection methods PeerJ Burcu Bakir-Gungor, Hilal Hacılar, Amhar Jabeer, Ozkan Ufuk Nalbantoglu, Oya Aran, Malik Yousef
2022	miRModuleNet: Detecting miRNA-mRNA Regulatory Modules Frontiers in Genetics Malik Yousef, Gokhan Goy, Burcu Bakir-Gungor
2022	Prediction of Linear Cationic Antimicrobial Peptides Active against Gram-Negative and Gram-Positive Bacteria Based on Machine Learning Models Applied Sciences Ümmü Gülsüm Söylemez, Malik Yousef, Zülal Kesmen, Mine Erdem Büyükkiraz, Burcu Bakir-Gungor
2021	Communications in Computer and Information Science Malik Yousef, Ahmet Sayıcı, Burcu Bakir-Gungor
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