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2024
Thallium spill shifts the structural and functional characteristics of viral communities with different lifestyles in river sediments
Science of The Total Environment
2024
Metagenomic analysis reveals high diversity of gut viromes in yaks (Bos grunniens) from the Qinghai-Tibet Plateau
Communications Biology
2024
Benchmarking bioinformatic virus identification tools using real-world metagenomic data across biomes
Genome Biology
2024
Interactive dynamics between rhizosphere bacterial and viral communities facilitate soybean fitness to cadmium stress revealed by time-series metagenomics
Soil Biology and Biochemistry
2024
Viral Diversity and Ecological Impact of DNA Viruses in Dominant Tick Species in China
Microorganisms
2024
Community Structure, Drivers, and Potential Functions of Different Lifestyle Viruses in Chaohu Lake
Viruses
2024
The insights into the phage communities of fermented foods in the age of viral metagenomics
Critical Reviews in Food Science and Nutrition
2024
A rumen virosphere with implications of contribution to fermentation and methane production, and endemism in cattle breeds and individuals
Applied and Environmental Microbiology
2024
Consensus statement from the first RdRp Summit: advancing RNA virus discovery at scale across communities
Frontiers in Virology
2024
Macroalgal virosphere assists with host–microbiome equilibrium regulation and affects prokaryotes in surrounding marine environments
The ISME Journal
2024
Glacier-preserved Tibetan Plateau viral community probably linked to warm–cold climate variations
Nature Geoscience
2024
Phylogenomic analysis expands the known repertoire of single-stranded DNA viruses in benthic zones of the South Indian Ocean
ISME Communications
2024
Viral potential to modulate microbial methane metabolism varies by habitat
Nature Communications
2024
Biodiversity of mudflat intertidal viromes along the Chinese coasts
Nature Communications
2024
Unveiling the unknown viral world in groundwater
Nature Communications
2024
Highly diverse RNA viruses and phage sequences concealed within birds
Microbiology Spectrum
2024
Prokaryotic-virus-encoded auxiliary metabolic genes throughout the global oceans
Microbiome
2024
Polysaccharides induce deep-sea Lentisphaerae strains to release chronic bacteriophages
eLife
2024
Tools and methodology to in silico phage discovery in freshwater environments
Frontiers in Microbiology
2024
Metagenome sequence data mining for viral interaction studies: Review on progress and prospects
Virus Research
2024
Decrypting the viral community in aerobic activated sludge reactors treating antibiotic production wastewater
Water Research
2024
Genomic diversity of phages infecting the globally widespread genus Sulfurimonas
Communications Biology
2023
Viral Diversity in Benthic Abyssal Ecosystems: Ecological and Methodological Considerations
Viruses
2023
Distinct adaptive strategies and microbial interactions of soil viruses under different metal(loid) contaminations
Journal of Hazardous Materials
2023
Benzo[a]pyrene stress impacts adaptive strategies and ecological functions of earthworm intestinal viromes
The ISME Journal
2023
Emerging investigator series: the role of phage lifestyle in wastewater microbial community structures and functions: insights into diverse microbial environments
Environmental Science: Water Research & Technology
2023
MArVD2: a machine learning enhanced tool to discriminate between archaeal and bacterial viruses in viral datasets
ISME Communications
2023
Viral metagenomics reveals diverse virus-host interactions throughout the soil depth profile
mBio
2023
Diversity and potential function of pig gut DNA viruses
Heliyon
2023
Viral Community Structure and Potential Functions in the Dried-Out Aral Sea Basin Change along a Desiccation Gradient
mSystems
2023
Significant Differences in Planktonic Virus Communities Between “Cellular Fraction” (0.22 ~ 3.0 µm) and “Viral Fraction” (< 0.22 μm) in the Ocean
Microbial Ecology
2023
Lower viral evolutionary pressure under stable versus fluctuating conditions in subzero Arctic brines
Microbiome
2023
Metagenomic analysis unveils the underexplored roles of prokaryotic viruses in a full-scale landfill leachate treatment plant
Water Research
2023
Evaluation of computational phage detection tools for metagenomic datasets
Frontiers in Microbiology
2023
Enhanced Bacterium–Phage Symbiosis in Attached Microbial Aggregates on a Membrane Surface Facing Elevated Hydraulic Stress
Environmental Science & Technology
2023
Viruses in deep-sea cold seep sediments harbor diverse survival mechanisms and remain genetically conserved within species
The ISME Journal
2023
Divergent endophytic viromes and phage genome repertoires among banana (Musa) species
Frontiers in Microbiology
2023
Diversity and function of mountain and polar supraglacial DNA viruses
Science Bulletin
2023
Metaviromic analyses of DNA virus community from sediments of the N-Choe stream, North India
Virus Research
2023
Interrogating the viral dark matter of the rumen ecosystem with a global virome database
Nature Communications
2023
Mesophilic and thermophilic viruses are associated with nutrient cycling during hyperthermophilic composting
The ISME Journal
2023
An extended catalog of integrated prophages in the infant and adult fecal microbiome shows high prevalence of lysogeny
Frontiers in Microbiology
2023
Viral community structure and functional potential vary with lifestyle and altitude in soils of Mt. Everest
Environment International
2023
ViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis
Gut Microbes
2022
Ecological and functional roles of bacteriophages in contrasting environments: marine, terrestrial and human gut
Current Opinion in Microbiology
2022
Virus diversity and interactions with hosts in deep-sea hydrothermal vents
Microbiome
2022
Potential metabolic and genetic interaction among viruses, methanogen and methanotrophic archaea, and their syntrophic partners
ISME Communications
2022
Viral community-wide auxiliary metabolic genes differ by lifestyles, habitats, and hosts
Microbiome
2022
A mixed blessing of viruses in wastewater treatment plants
Water Research
2022
Virus genomics: what is being overlooked?
Current Opinion in Virology
2022
The role of virome in the gastrointestinal tract and beyond
FEMS Microbiology Reviews
2022
Genomic Analysis Unveils the Pervasiveness and Diversity of Prophages Infecting Erwinia Species
Pathogens
2022
Ecogenomics reveals viral communities across the Challenger Deep oceanic trench
Communications Biology
2022
Metabolic arsenal of giant viruses: Host hijack or self-use?
eLife
2021
Glacier ice archives nearly 15,000-year-old microbes and phages
Microbiome
2021
efam: an expanded, metaproteome-supported HMM profile database of viral protein families
Bioinformatics
2021
Perspective on taxonomic classification of uncultivated viruses
Current Opinion in Virology
2021
Active virus-host interactions at sub-freezing temperatures in Arctic peat soil
Microbiome
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