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2026
Groundwork for phage therapy: multi-faceted comparative analysis of lytic bacteriophages infecting uropathogenic Escherichia coli
Virology
2025
Comprehensive Genomic Analysis of Klebsiella pneumoniae and Its Temperate N-15-like Phage: From Isolation to Functional Annotation
Microorganisms
2025
Survey of Thirteen Novel Pseudomonas putida Bacteriophages
Applied Microbiology
2025
Rational Design of a Potent Two-Phage Cocktail Against a Contemporary Acinetobacter baumannii Strain Recovered from a Burned Patient at the Lausanne University Hospital
Viruses
2025
Metagenomic analysis reveals gut phage diversity across three mammalian models
Microbiome
2025
Biogeographic patterns of viral communities, ARG profiles and virus-ARG associations in adjacent paddy and upland soils across black soil region
Journal of Hazardous Materials
2025
The gut virome and human health: From diversity to personalized medicine
Engineering Microbiology
2025
Biogeographic patterns and adaptive strategies of microbial carbon metabolic profiles in paddy soils in the Chinese Mollisol region
Geoderma
2025
Genome sequence of the broad-host-range phage phi1_092033 against Acinetobacter baumannii
Microbiology Resource Announcements
2025
Environmental gradients shape viral-host dynamics in the Pearl River estuary
ISME Communications
2025
Early-life development of the gut virome and plasmidome: A longitudinal study in cesarean-born infants
Cell Reports
2025
Efficacy of phage vB_Ps_ZCPS13 in controlling Pan-drug-resistant Pseudomonas aeruginosa from urinary tract infections (UTIs) and eradicating biofilms from urinary catheters
Virology Journal
2025
Highly stable bacteriophages PIN1 and PIN2 have hallmarks of flagellotropic phages but infect immotile bacteria
npj Viruses
2025
Comprehensive analysis of phage genomes from diverse environments reveals their diversity, potential applications, and interactions with hosts and other phages
Frontiers in Microbiology
2025
PhageDPO: A machine-learning based computational framework for identifying phage depolymerases
Computers in Biology and Medicine
2025
Phage cocktail against Vibrio parahaemolyticus causing acute hepatopancreatic necrosis disease (AHPND) in Penaeus vannamei: Genomic, biological, and pathological characterization
Microbial Pathogenesis
2025
Urinary bacteriophage cooperation with bacterial pathogens during human urinary tract infections supports lysogenic phage therapy
Communications Biology
2025
House dust microbiome differentiation and phage-mediated antibiotic resistance and virulence dissemination in the presence of endocrine-disrupting chemicals and pharmaceuticals
Microbiome
2025
Deep learning-guided structural analysis of a novel bacteriophage KPP105 against multidrug-resistant Klebsiella pneumoniae
Computational and Structural Biotechnology Journal
2025
Viruses Facilitate Energy Acquisition Potential by Their Bacterial Hosts in Rhizosphere of Grafted Plants
Plant, Cell & Environment
2025
Plasticizers determine a deeper reshape of soil virome than microplastics
Chemical Engineering Journal
2025
Bacteriophages carry auxiliary metabolic genes related to energy, sulfur and phosphorus metabolism during a harmful algal bloom in a freshwater lake
Chemosphere
2025
Evaluating the therapeutic potential of a novel bacteriophage cocktail against carbapenem-resistant Pseudomonas aeruginosa in a murine burn wound infection model
BMC Microbiology
2025
Phage vB_KlebPS_265 Active Against Resistant/MDR and Hypermucoid K2 Strains of Klebsiella pneumoniae
Viruses
2025
Exploration of the genetic landscape of bacterial dsDNA viruses reveals an ANI gap amid extensive mosaicism
mSystems
2025
Longitudinal phage–bacteria dynamics in the early life gut microbiome
Nature Microbiology
2025
Deciphering shared receptor usage in genomically unrelated bacteriophages infecting hypervirulent Klebsiella pneumoniae K1 ST23
FEMS Microbes
2025
Close interactions between prokaryotes and plasmids or viruses highlight a pivotal role of horizontal gene transfer in shaping antibiotic/metal(loid) resistome and their prokaryotic supercarriers in untreated hospital sewage
Water Research
2025
Engrafting gut bacteriophages have potential to modulate microbial metabolism in fecal microbiota transplantation
Microbiome
2025
Comparative genomics reveals diversity and taxonomic relationships among Clostridioides difficile phages
Microbiology Spectrum
2025
Exploring diversity and distribution patterns of chicken gut bacteriophage community
Animal Microbiome
2025
Uncovering soil amendment-induced genomic and functional divergence in soybean rhizosphere microbiomes during cadmium-contaminated soil remediation: Novel insights from field multi-omics
Environmental Pollution
2025
Evolutionary selection of trimethoprim-resistant dfrA genes in lytic phages affects phage and host fitness during infection
Science Advances
2025
Complete genome sequences of three Pseudomonas aeruginosa phages of the genus Phikmvvirus
Microbiology Resource Announcements
2025
Highly specific virus-host linkages in mesothermophilic and circumneutral hot springs microbial communities
Research in Microbiology
2025
Phage therapy with nebulized cocktail BX004-A for chronic Pseudomonas aeruginosa infections in cystic fibrosis: a randomized first-in-human trial
Nature Communications
2025
Genome sequence of a lytic phage phi1_092060 targeting ST2 KL104-type Acinetobacter baumannii
Microbiology Resource Announcements
2025
KlebPhaCol: a community-driven resource for Klebsiella research identified a novel phage family
Nucleic Acids Research
2025
Antibiotic perturbation of the human gut phageome preserves its individuality and promotes blooms of virulent phages
Cell Reports
2025
Genome sequences of two phages active against cystic fibrosis isolates of Pseudomonas aeruginosa
Microbiology Resource Announcements
2025
Towards Comprehensive Metagenomic Recovery and Data Mining of Complex Environmental DNA Viromes
Environmental DNA
2025
Unveiling Host Interactions and Evolutionary Constraints of a Novel Bacteriophage Infecting Xanthomonas hortorum pv. vitians
Environmental Microbiology Reports
2025
Lytic activity, stability, biofilm disruption capabilities, and genomic characterization of two bacteriophages active against respiratory MRSA
Journal of Applied Microbiology
2025
Salinity-driven shifts in estuarine viral community composition and diversity near the Shenzhen coast
Applied and Environmental Microbiology
2025
Negativeome characterization and decontamination in early-life virome studies
Nature Communications
2025
Phage quest: a beginner’s guide to explore viral diversity in the prokaryotic world
Briefings in Bioinformatics
2025
A novel broad host range phage phiA85 displays a synergistic effect with antibiotics targeting carbapenem-resistant Klebsiella pneumoniae
Microbiology Spectrum
2025
Genome sequence of staphylococcal phage ESa4 of the genus Rosenblumvirus
Microbiology Resource Announcements
2025
Characterization of the phyllosphere virome of fresh vegetables and potential transfer to the human gut
Nature Communications
2025
Dysbiosis of gut microbiota in COVID-19 is associated with intestinal DNA phage dynamics of lysogenic and lytic infection
Microbiology Spectrum
2025
Genomic and proteomic characterization of four novel Schitoviridae family phages targeting uropathogenic Escherichia coli strain
Virology Journal
2025
Characterization and therapeutic potential of phage vB_Eco_ZCEC08 against multidrug-resistant uropathogenic Escherichia coli
BMC Microbiology
2025
Host–virome associations in the weathering crust of a rapidly retreating temperate Alpine glacier
Microbial Genomics
2025
Complete genome sequence of the lytic vB_EcoP_ShWW44 bacteriophage, effective against bovine pathogenic Escherichia coli
Microbiology Resource Announcements
2025
Long-term health outcomes in adolescents with obesity treated with faecal microbiota transplantation: 4-year follow-up
Nature Communications
2025
Novel bacteriophages targeting wheat phyllosphere bacteria carry DNA modifications and single-strand breaks
Virus Research
2025
PredPVP: A Stacking Model for Predicting Phage Virion Proteins Based on Feature Selection Methods
Current Bioinformatics
2025
Abundance measurements reveal the balance between lysis and lysogeny in the human gut microbiome
Current Biology
2025
Effect of an antibiotic and a probiotic on phage communities in the swine gut microbiota
BMC Research Notes
2025
Isolation of Lytic Bacteriophages of Escherichia coli and Their Combined Use with Antibiotics Against the Causative Agents of Colibacillosis in Calves
Veterinary Sciences
2024
In vivo efficacy of phage cocktails against carbapenem resistance Acinetobacter baumannii in the rat pneumonia model
Journal of Virology
2024
Diverse phage communities are maintained stably on a clonal bacterial host
Science
2024
Characterization of four virulent bacteriophages as potential therapeutics for clinical multidrug-resistant, extensively drug-resistant Acinetobacter baumannii
Future Virology
2024
The gut virome is associated with stress-induced changes in behaviour and immune responses in mice
Nature Microbiology
2024
Discovery and description of novel phage genomes from urban microbiomes sampled by the MetaSUB consortium
Scientific Reports
2024
Massive expansion of the pig gut virome based on global metagenomic mining
npj Biofilms and Microbiomes
2024
Efficient Recovery of Complete Gut Viral Genomes by Combined Short‐ and Long‐Read Sequencing
Advanced Science
2024
Assessing phage-host population dynamics by reintroducing virulent viruses to synthetic microbiomes
Cell Host & Microbe
2024
Distributions, interactions, and dynamics of prokaryotes and phages in a hybrid biological wastewater treatment system
Microbiome
2024
Developmental Dynamics of the Gut Virome in Tibetan Pigs at High Altitude: A Metagenomic Perspective across Age Groups
Viruses
2024
Coding genomes with gapped pattern graph convolutional network
Bioinformatics
2024
Host population structure and species resolution reveal prophage transmission dynamics
mBio
2024
Fecal microbiota transplantation alters gut phage communities in a clinical trial for obesity
Microbiome
2024
Dynamic nature of viral and bacterial communities in human faeces
iScience
2024
Viral diversity within marine biofilms and interactions with corrosive microbes
Environmental Research
2024
Unveiling the unknown viral world in groundwater
Nature Communications
2024
The bacterial defense system MADS interacts with CRISPR-Cas to limit phage infection and escape
Cell Host & Microbe
2024
Antimicrobial resistance crisis: could artificial intelligence be the solution?
Military Medical Research
2024
Targeted viromes and total metagenomes capture distinct components of bee gut phage communities
Microbiome
2024
Wild-type lytic bacteriophages against Salmonella Heidelberg: Further characterization and effect of prophylactic therapy in broiler chickens
Research in Veterinary Science
2024
Targeted phage hunting to specific Klebsiella pneumoniae clinical isolates is an efficient antibiotic resistance and infection control strategy
Microbiology Spectrum
2024
Ultraconserved bacteriophage genome sequence identified in 1300-year-old human palaeofaeces
Nature Communications
2024
High activity and specificity of bacteriophage cocktails against carbapenem-resistant Klebsiella pneumoniae belonging to the high-risk clones CG258 and ST307
Frontiers in Microbiology
2024
Two novel phages, Klebsiella phage GADU21 and Escherichia phage GADU22, from the urine samples of patients with urinary tract infection
Virus Genes
2024
Phylogenomics of novel clones of Aeromonas veronii recovered from a freshwater lake reveals unique biosynthetic gene clusters
Microbiology Spectrum
2024
Interspecies ecological competition rejuvenates decayed Geobacter electroactive biofilm
The ISME Journal
2024
Phenotypic characterization and genomic analysis of a Salmonella phage L223 for biocontrol of Salmonella spp. in poultry
Scientific Reports
2024
Correlation between the gut microbiome and neurodegenerative diseases: a review of metagenomics evidence
Neural Regeneration Research
2024
A compendium of ruminant gastrointestinal phage genomes revealed a higher proportion of lytic phages than in any other environments
Microbiome
2024
Chronic exposure to polycyclic aromatic hydrocarbons alters skin virome composition and virus–host interactions
The ISME Journal
2024
Investigating the viral ecology and contribution to the microbial ecology in full-scale mesophilic anaerobic digesters
Chemosphere
2024
Isolation and characterization of bacteriophages for controlling Rhizobium radiobacter – causing stem and crown gall of highbush blueberry
Frontiers in Microbiology
2024
Genome sequence of the Klebsiella quasipneumoniae bacteriophage EKq1 with activity against Klebsiella pneumoniae
Microbiology Resource Announcements
2024
Genome sequences of five Klebsiella bacteriophages that belong to the genus Jiaodavirus
Microbiology Resource Announcements
2024
ProkBERT PhaStyle: accurate phage lifestyle prediction with pretrained genomic language models
Bioinformatics Advances
2024
Isolation and Characterization of Six Novel Fusobacterium necrophorum Phages
PHAGE
2024
TolRad, a model for predicting radiation tolerance using Pfam annotations, identifies novel radiosensitive bacterial species from reference genomes and MAGs
Microbiology Spectrum
2024
Phage-inclusive profiling of human gut microbiomes with Phanta
Nature Biotechnology
2024
PhageGE: an interactive web platform for exploratory analysis and visualization of bacteriophage genomes
GigaScience
2024
The role of phages for microdiverse bacterial communities in proglacial stream biofilms
Frontiers in Microbiomes
2024
Complete genome sequences of three Pseudomonas aeruginosa jumbo bacteriophages discovered in Kenya
Microbiology Resource Announcements
2024
A novel Enterococcus faecalis bacteriophage Ef212: biological and genomic features
International Microbiology
2024
Biological and genomic characteristics of three novel bacteriophages and a phage-plasmid of Klebsiella pneumoniae
Canadian Journal of Microbiology
2024
Complete genome sequence of Escherichia phage iGC_PHA_EC001
Microbiology Resource Announcements
2024
Phylogenomic analysis expands the known repertoire of single-stranded DNA viruses in benthic zones of the South Indian Ocean
ISME Communications
2023
PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer
Bioinformatics
2023
PacBio sequencing of human fecal samples uncovers the DNA methylation landscape of 22 673 gut phages
Nucleic Acids Research
2023
Genomic and proteomic characterization of vB_SauM-UFV_DC4, a novel Staphylococcus jumbo phage
Applied Microbiology and Biotechnology
2023
Machine Learning Mediated Advanced Phage and Antimicrobial Therapy- A Futuristic Approach
Highlights in BioScience
2023
Significant Differences in Planktonic Virus Communities Between “Cellular Fraction” (0.22 ~ 3.0 µm) and “Viral Fraction” (< 0.22 μm) in the Ocean
Microbial Ecology
2023
Simultaneous entry as an adaptation to virulence in a novel satellite-helper system infecting Streptomyces species
The ISME Journal
2023
Progress in Molecular Biology and Translational Science
2023
Awaking the dormant virome in the rhizosphere
Molecular Ecology
2023
Distinct adaptive strategies and microbial interactions of soil viruses under different metal(loid) contaminations
Journal of Hazardous Materials
2023
Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes
Cell
2023
Complete genome sequence of the broad host range Acinetobacter baumannii phage EAb13
Microbiology Resource Announcements
2023
Comparative Genomics of Bacillus subtilis Phages Related to phiNIT1 from Desert Soils of the Southwest United States
PHAGE
2023
Epitopes in the capsular polysaccharide and the porin OmpK36 receptors are required for bacteriophage infection of Klebsiella pneumoniae
Cell Reports
2023
Bacteriophage therapy against pathological Klebsiella pneumoniae ameliorates the course of primary sclerosing cholangitis
Nature Communications
2023
Characterization of Klebsiella pneumoniae bacteriophages, KP1 and KP12, with deep learning-based structure prediction
Frontiers in Microbiology
2023
Genome Sequence of Staphylococcus aureus Phage ESa2
Microbiology Resource Announcements
2023
Unveiling the hidden role of aquatic viruses in hydrocarbon pollution bioremediation
Journal of Hazardous Materials
2023
Viral Community Structure and Potential Functions in the Dried-Out Aral Sea Basin Change along a Desiccation Gradient
mSystems
2023
Comprehensive Characterization of a Novel Bacteriophage, vB_VhaS_MAG7 against a Fish Pathogenic Strain of Vibrio harveyi and Its In Vivo Efficacy in Phage Therapy Trials
International Journal of Molecular Sciences
2023
Advances in the field of phage-based therapy with special emphasis on computational resources
Briefings in Bioinformatics
2023
Virus–pathogen interactions improve water quality along the Middle Route of the South-to-North Water Diversion Canal
The ISME Journal
2023
Isolation and characterization of a novel Tenacibaculum species and a corresponding bacteriophage from a Mediterranean fish hatchery: Description of Tenacibaculum larymnensis sp. nov. and Tenacibaculum phage Larrie
Frontiers in Microbiology
2023
PCR Assay for Rapid Taxonomic Differentiation of Virulent Staphylococcus aureus and Klebsiella pneumoniae Bacteriophages
International Journal of Molecular Sciences
2023
Phages against Noncapsulated Klebsiella pneumoniae: Broader Host range, Slower Resistance
Microbiology Spectrum
2023
iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria
PLOS Biology
2023
Horizontal Gene Transfer and CRISPR Targeting Drive Phage-Bacterial Host Interactions and Coevolution in “Pink Berry” Marine Microbial Aggregates
Applied and Environmental Microbiology
2023
Biological Characterization and Genomic Analysis of Novel Phages DLDT_So2 and BHDT_So9 Against Pseudomonas solanacearum, an Infectious Agent in Tomato in Vietnam
Indian Journal of Microbiology
2023
Genomic Analysis and Taxonomic Characterization of Seven Bacteriophage Genomes Metagenomic-Assembled from the Dishui Lake
Viruses
2023
Gut virome profiling identifies an association between temperate phages and colorectal cancer promoted by Helicobacter pylori infection
Gut Microbes
2023
Viruses in deep-sea cold seep sediments harbor diverse survival mechanisms and remain genetically conserved within species
The ISME Journal
2023
Long-term CRISPR locus dynamics and stable host-virus co-existence in subsurface fractured shales
Current Biology
2023
A novel Queuovirinae lineage of Pseudomonas aeruginosa phages encode dPreQ0 DNA modifications with a single GA motif that provide restriction and CRISPR Cas9 protection in vitro
Nucleic Acids Research
2023
Bacillus subtilis Phages Related to SIOphi from Desert Soils of the Southwest United States
PHAGE
2023
Administration of Bacteriophages via Nebulization during Mechanical Ventilation: In Vitro Study and Lung Deposition in Macaques
Viruses
2023
Disturbed gut virome with potent interferonogenic property in systemic lupus erythematosus
Science Bulletin
2023
The Lytic Activity of Bacteriophage ZCSE9 against Salmonella enterica and Its Synergistic Effects with Kanamycin
Viruses
2023
DePolymerase Predictor (DePP): a machine learning tool for the targeted identification of phage depolymerases
BMC Bioinformatics
2023
Discovery of an Abundant Viral Genus in Polar Regions through the Isolation and Genomic Characterization of a New Virus againstOceanospirillaceae
Applied and Environmental Microbiology
2023
Knowing and Naming: Phage Annotation and Nomenclature for Phage Therapy
Clinical Infectious Diseases
2023
Multiomic spatial analysis reveals a distinct mucosa-associated virome
Gut Microbes
2023
Characterization and Genome Analysis of Vibrio campbellii Lytic Bacteriophage OPA17
Microbiology Spectrum
2023
Ongoing shuffling of protein fragments diversifies core viral functions linked to interactions with bacterial hosts
Nature Communications
2023
Centenarians have a diverse gut virome with the potential to modulate metabolism and promote healthy lifespan
Nature Microbiology
2023
ViroProfiler: a containerized bioinformatics pipeline for viral metagenomic data analysis
Gut Microbes
2023
Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem
Microbiome
2023
Bacteriophages playing nice: Lysogenic bacteriophage replication stable in the human gut microbiota
iScience
2023
Isolation, characterization, and evaluation of putative new bacteriophages for controlling bacterial spot on tomato in Brazil
Archives of Virology
2023
PhaTYP: predicting the lifestyle for bacteriophages using BERT
Briefings in Bioinformatics
2023
Characterization, genome analysis and antibiofilm efficacy of lytic Proteus phages RP6 and RP7 isolated from university hospital sewage
Virus Research
2023
Novel Escherichia coli-Infecting Bacteriophages Isolated from Uganda That Target Human Clinical Isolates
PHAGE
2023
New Bacteriophages Members of the Ackermannviridae Family Specific for Klebsiella pneumoniae ST258
PHAGE
2023
Inference of the Life Cycle of Environmental Phages from Genomic Signature Distances to Their Hosts
Viruses
2023
MQM1, a bacteriophage infecting strains of Aeromonas salmonicida subspecies salmonicida carrying Prophage 3
Virus Research
2023
PhaGAA: an integrated web server platform for phage genome annotation and analysis
Bioinformatics
2023
Characterization and comprehensive genome analysis of novel bacteriophage, vB_Kpn_ZCKp20p, with lytic and anti-biofilm potential against clinical multidrug-resistant Klebsiella pneumoniae
Frontiers in Cellular and Infection Microbiology
2022
Comparative Analysis of Novel Lytic Phages for Biological Control of Phytopathogenic Xanthomonas spp.
Microbiology Spectrum
2022
Phages in the Gut Ecosystem
Frontiers in Cellular and Infection Microbiology
2022
Uncovering 1058 Novel Human Enteric DNA Viruses Through Deep Long-Read Third-Generation Sequencing and Their Clinical Impact
Gastroenterology
2022
Computational Tools for the Analysis of Uncultivated Phage Genomes
Microbiology and Molecular Biology Reviews
2022
Comparative Genomics of Six Lytic Bacillus subtilis Phages from the Southwest United States
PHAGE
2022
Validation of the application of gel beads-based single-cell genome sequencing platform to soil and seawater
ISME Communications
2022
PhageLeads: Rapid Assessment of Phage Therapeutic Suitability Using an Ensemble Machine Learning Approach
Viruses
2022
Genomic and Biological Profile of a Novel Bacteriophage, Vibrio phage Virtus, Which Improves Survival of Sparus aurata Larvae Challenged with Vibrio harveyi
Pathogens
2022
Isolation and characterization of Brochothrix phage ADU4
Virus Research
2022
Viral diversity is linked to bacterial community composition in alpine stream biofilms
ISME Communications
2022
Extensive gut virome variation and its associations with host and environmental factors in a population-level cohort
Nature Communications
2022
Isolation and Characterization of Novel Lytic Phages Infecting Multidrug-Resistant Escherichia coli
Microbiology Spectrum
2022
Transplantation of bacteriophages from ulcerative colitis patients shifts the gut bacteriome and exacerbates the severity of DSS colitis
Microbiome
2022
The transcriptional regulator CtrA controls gene expression in Alphaproteobacteria phages: Evidence for a lytic deferment pathway
Frontiers in Microbiology
2022
Genomic Characterisation of UFJF_PfDIW6: A Novel Lytic Pseudomonas fluorescens-Phage with Potential for Biocontrol in the Dairy Industry
Viruses
2022
Isolation and Characterization of Lytic Proteus Virus 309
Viruses
2022
Viral biogeography of the mammalian gut and parenchymal organs
Nature Microbiology
2022
Bacteriophage-Mediated Risk Pathways Underlying the Emergence of Antimicrobial Resistance via Intrageneric and Intergeneric Recombination of Antibiotic Efflux Genes Across Natural populations of Human Pathogenic Bacteria
Microbial Ecology
2022
Novel Salmonella Phage, vB_Sen_STGO-35-1, Characterization and Evaluation in Chicken Meat
Microorganisms
2022
Characterisation of Bacteriophage vB_SmaM_Ps15 Infective to Stenotrophomonas maltophilia Clinical Ocular Isolates
Viruses
2021
Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome
Nature Microbiology
2021
Phage Genome Annotation: Where to Begin and End
PHAGE
2021
Viruses and Their Interactions With Bacteria and Archaea of Hypersaline Great Salt Lake
Frontiers in Microbiology
2021
Phage Annotation Guide: Guidelines for Assembly and High-Quality Annotation
PHAGE
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