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2026	Microbiome metabolic modeling as a tool for innovation in fermented foods Current Opinion in Food Science Elham Karimi, Julien Tap, Marie-Christine Champomier-Vergès, Stéphane Chaillou
2025	Oncolytic Vaccinia Virus Expressing HSP70 shRNA Exerts Anti-Tumor Effects in Human Ovarian Cancer via Triggering the Autophagy–ROS Feedback Loop and Immune Activation Viruses Zheqi Cai, Zhiyun Hong, Guohui Zhang, Tinwei Zhu, Yanrong Zhou, Ting Ye, Gongchu Li, Kan Chen
2024	Community‐scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing Microbial Biotechnology Klara Cerk, Pablo Ugalde‐Salas, Chabname Ghassemi Nedjad, Maxime Lecomte, Coralie Muller, David J. Sherman, Falk Hildebrand, Simon Labarthe, Clémence Frioux
2023	Maintaining beneficial alga-associated bacterial communities under heat stress: insights from controlled co-culture experiments using antibiotic-resistant bacterial strains FEMS Microbiology Ecology Elham Karimi, Simon M Dittami
2023	Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe Genome Research Arnaud Belcour, Jeanne Got, Méziane Aite, Ludovic Delage, Jonas Collén, Clémence Frioux, Catherine Leblanc, Simon M. Dittami, Samuel Blanquart, Gabriel V. Markov, Anne Siegel
2022	Analysis of the Propionate Metabolism in Bacillus subtilis during 3-Indolacetic Production Microorganisms Freddy Castillo-Alfonso, Alejandro Quintana-Menéndez, Gabriel Vigueras-Ramírez, Alfonso Sales-Cruz, Luis Rosales-Colunga, Roberto Olivares-Hernández
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