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Gonzalez Sergio Alberto, Rivarola Maximo, Ribone Andres, Lew Sergio, Paniego Norma

Xiaoyu Zhao, Ting Yu

Ting Yu, Xiaoyu Zhao, Guojun Li

Yun Heo, Gowthami Manikandan, Anand Ramachandran, Deming Chen

Susanne Jacksch, Christoph König, Dominik Kaiser, Mirko Weide, Stefan Ratering, Sylvia Schnell, Markus Egert

M. Eggertsen, S. A. Tano, D. H. Chacin, J. S. Eklöf, J. Larsson, C. Berkström, A. S. Buriyo, C. Halling

J. Antonio Baeza, Matthew MacManes

Cary Pirone-Davies, Melinda A. McFarland, Christine H. Parker, Yoko Adachi, Timothy R. Croley

Alexander Lachmann, Daniel J.B. Clarke, Denis Torre, Zhuorui Xie, Avi Ma'ayan

Thomas L. Williams, Stephen L. Senft, Jingjie Yeo, Francisco J. Martín-Martínez, Alan M. Kuzirian, Camille A. Martin, Christopher W. DiBona, Chun-Teh Chen, Sean R. Dinneen, Hieu T. Nguyen, Conor M. Gomes, Joshua J. C. Rosenthal, Matthew D. MacManes, Feixia Chu, Markus J. Buehler, Roger T. Hanlon, Leila F. Deravi

M. J. T. N. Timmermans, M. J. Thompson, S. Collins, A. P. Vogler

Vahap Eldem, Gokmen Zararsiz, Tunahan Taşçi, Izzet Parug Duru, Yakup Bakir, Melike Erkan

Antony T. Vincent, Nicolas Derome, Brian Boyle, Alexander I. Culley, Steve J. Charette

David Weese, Marcel H. Schulz, Hugues Richard

Cheryl Lewis Ames, Joseph F. Ryan, Alexandra E. Bely, Paulyn Cartwright, Allen G. Collins

Franco Milicchio, Iain E. Buchan, Mattia C.F. Prosperi

Manisha Priyam, Mamta Tripathy, Umesh Rai, Soma Mondal Ghorai

Xuan Li, Yimeng Kong, Qiong‐Yi Zhao, Yuan‐Yuan Li, Pei Hao

Jason Macrander, Michael Broe, Marymegan Daly

Natasha Pavlovikj, Kevin Begcy, Sairam Behera, Malachy Campbell, Harkamal Walia, Jitender S. Deogun

Vipin Sachdeva, Srinivas Aluru, David A. Bader

Mark F. Richardson, Craig D. H. Sherman

Stephen E. Harris, Rachel J. O'Neill, Jason Munshi‐South

Pierre De Wit, Melissa H. Pespeni, Stephen R. Palumbi

Chong Wang, Markus A. Grohme, Brahim Mali, Ralph O. Schill, Marcus Frohme

Gael P. Alamancos, Eneritz Agirre, Eduardo Eyras

Xiaofan Zhou, Antonis Rokas

2024	Comprehensive Analysis of the Influence of Technical and Biological Variations on De Novo Assembly of RNA-Seq Datasets Bioinformatics and Biology Insights Gonzalez Sergio Alberto, Rivarola Maximo, Ribone Andres, Lew Sergio, Paniego Norma
2022	Tiglon enables accurate transcriptome assembly via integrating mappings of different aligners iScience Xiaoyu Zhao, Ting Yu
2022	TransMeta simultaneously assembles multisample RNA-seq reads Genome Research Ting Yu, Xiaoyu Zhao, Guojun Li
2021	Bioinformatics Yun Heo, Gowthami Manikandan, Anand Ramachandran, Deming Chen
2021	Metatranscriptomic Analysis of Bacterial Communities on Laundered Textiles: A Pilot Case Study Microorganisms Susanne Jacksch, Christoph König, Dominik Kaiser, Mirko Weide, Stefan Ratering, Sylvia Schnell, Markus Egert
2021	Different environmental variables predict distribution and cover of the introduced red seaweed Eucheuma denticulatum in two geographical locations Biological Invasions M. Eggertsen, S. A. Tano, D. H. Chacin, J. S. Eklöf, J. Larsson, C. Berkström, A. S. Buriyo, C. Halling
2020	De novo assembly and functional annotation of the heart + hemolymph transcriptome in the Caribbean spiny lobster Panulirus argus Marine Genomics J. Antonio Baeza, Matthew MacManes
2020	The Utility of Genomic and Transcriptomic Data in the Construction of Proxy Protein Sequence Databases for Unsequenced Tree Nuts Biology Cary Pirone-Davies, Melinda A. McFarland, Christine H. Parker, Yoko Adachi, Timothy R. Croley
2020	Interoperable RNA-Seq analysis in the cloud Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms Alexander Lachmann, Daniel J.B. Clarke, Denis Torre, Zhuorui Xie, Avi Ma'ayan
2019	Dynamic pigmentary and structural coloration within cephalopod chromatophore organs Nature Communications Thomas L. Williams, Stephen L. Senft, Jingjie Yeo, Francisco J. Martín-Martínez, Alan M. Kuzirian, Camille A. Martin, Christopher W. DiBona, Chun-Teh Chen, Sean R. Dinneen, Hieu T. Nguyen, Conor M. Gomes, Joshua J. C. Rosenthal, Matthew D. MacManes, Feixia Chu, Markus J. Buehler, Roger T. Hanlon, Leila F. Deravi
2018	The Oyster River Protocol: a multi-assembler and kmer approach for de novo transcriptome assembly PeerJ Matthew D. MacManes
2017	Independent evolution of sexual dimorphism and female‐limited mimicry in swallowtail butterflies (Papilio dardanus and Papilio phorcas) Molecular Ecology M. J. T. N. Timmermans, M. J. Thompson, S. Collins, A. P. Vogler
2017	Applications of RNA-Seq and Omics Strategies - From Microorganisms to Human Health Vahap Eldem, Gokmen Zararsiz, Tunahan Taşçi, Izzet Parug Duru, Yakup Bakir, Melike Erkan
2017	Next-generation sequencing (NGS) in the microbiological world: How to make the most of your money Journal of Microbiological Methods Antony T. Vincent, Nicolas Derome, Brian Boyle, Alexander I. Culley, Steve J. Charette
2017	Algorithms for Next-Generation Sequencing Data David Weese, Marcel H. Schulz, Hugues Richard
2016	A new transcriptome and transcriptome profiling of adult and larval tissue in the box jellyfish Alatina alata: an emerging model for studying venom, vision and sex BMC Genomics Cheryl Lewis Ames, Joseph F. Ryan, Alexandra E. Bely, Paulyn Cartwright, Allen G. Collins
2016	2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB) Franco Milicchio, Iain E. Buchan, Mattia C.F. Prosperi
2016	Tracing the evolutionary lineage of pattern recognition receptor homologues in vertebrates: An insight into reptilian immunity via de novo sequencing of the wall lizard splenic transcriptome Veterinary Immunology and Immunopathology Manisha Priyam, Mamta Tripathy, Umesh Rai, Soma Mondal Ghorai
2016	De novo assembly of transcriptome from next‐generation sequencing data Quantitative Biology Xuan Li, Yimeng Kong, Qiong‐Yi Zhao, Yuan‐Yuan Li, Pei Hao
2016	Tissue-Specific Venom Composition and Differential Gene Expression in Sea Anemones Genome Biology and Evolution Jason Macrander, Michael Broe, Marymegan Daly
2016	2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) Natasha Pavlovikj, Kevin Begcy, Sairam Behera, Malachy Campbell, Harkamal Walia, Jitender S. Deogun
2016	2016 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW) Vipin Sachdeva, Srinivas Aluru, David A. Bader
2015	De Novo Assembly and Characterization of the Invasive Northern Pacific Seastar Transcriptome PLOS ONE Mark F. Richardson, Craig D. H. Sherman
2015	Transcriptome resources for the white‐footed mouse (Peromyscus leucopus): new genomic tools for investigating ecologically divergent urban and rural populations Molecular Ecology Resources Stephen E. Harris, Rachel J. O'Neill, Jason Munshi‐South
2015	SNP genotyping and population genomics from expressed sequences – current advances and future possibilities Molecular Ecology Pierre De Wit, Melissa H. Pespeni, Stephen R. Palumbi
2014	Towards Decrypting Cryptobiosis—Analyzing Anhydrobiosis in the Tardigrade Milnesium tardigradum Using Transcriptome Sequencing PLoS ONE Chong Wang, Markus A. Grohme, Brahim Mali, Ralph O. Schill, Marcus Frohme
2014	Methods in Molecular Biology Gael P. Alamancos, Eneritz Agirre, Eduardo Eyras
2014	Prevention, diagnosis and treatment of high‐throughput sequencing data pathologies Molecular Ecology Xiaofan Zhou, Antonis Rokas
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