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2025	Hash-binding: DNA-protein binding prediction using hashing-based embedding Neural Computing and Applications Sarwan Ali, Tamkanat E. Ali, Murray Patterson
2025	PLM-DBPs: enhancing plant DNA-binding protein prediction by integrating sequence-based and structure-aware protein language models Briefings in Bioinformatics Suresh Pokharel, Kepha Barasa, Pawel Pratyush, Dukka B KC
2025	2025 2nd International Conference on Trends in Engineering Systems and Technologies (ICTEST) Neethu Thomas, P. Eben Sophia
2025	DRBP-EDP: classification of DNA-binding proteins and RNA-binding proteins using ESM-2 and dual-path neural network NAR Genomics and Bioinformatics Qiang Mu, Guoping Yu, Guomin Zhou, Yubing He, Jianhua Zhang
2025	Communications in Computer and Information Science Sarwan Ali, Prakash Chourasia, Murray Patterson
2024	An Efficient Deep Learning Approach for DNA-Binding Proteins Classification from Primary Sequences International Journal of Computational Intelligence Systems Nosiba Yousif Ahmed, Wafa Alameen Alsanousi, Eman Mohammed Hamid, Murtada K. Elbashir, Khadija Mohammed Al-Aidarous, Mogtaba Mohammed, Mohamed Elhafiz M. Musa
2024	BERT-TFBS: a novel BERT-based model for predicting transcription factor binding sites by transfer learning Briefings in Bioinformatics Kai Wang, Xuan Zeng, Jingwen Zhou, Fei Liu, Xiaoli Luan, Xinglong Wang
2024	Gluconeogenesis unraveled: A proteomic Odyssey with machine learning Methods Seher Ansar Khawaja, Fahad Alturise, Tamim Alkhalifah, Sher Afzal Khan, Yaser Daanial Khan
2024	Bioinformatics for Plant Research and Crop Breeding Upendra Kumar Pradhan, Prabina Kumar Meher, Pushpendra Kumar Gupta
2024	A comprehensive review of protein-centric predictors for biomolecular interactions: from proteins to nucleic acids and beyond Briefings in Bioinformatics Pengzhen Jia, Fuhao Zhang, Chaojin Wu, Min Li
2024	ProkDBP: Toward more precise identification of prokaryoticDNAbinding proteins Protein Science Upendra Kumar Pradhan, Prabina Kumar Meher, Sanchita Naha, Ritwika Das, Ajit Gupta, Rajender Parsad
2024	DBPMod: a supervised learning model for computational recognition of DNA-binding proteins in model organisms Briefings in Functional Genomics Upendra K Pradhan, Prabina K Meher, Sanchita Naha, Nitesh K Sharma, Aarushi Agarwal, Ajit Gupta, Rajender Parsad
2024	Benchmarking recent computational tools for DNA-binding protein identification Briefings in Bioinformatics Xizi Luo, Amadeus Song Yi Chi, Andre Huikai Lin, Tze Jet Ong, Limsoon Wong, Chowdhury Rafeed Rahman
2024	Representation Learning of Biological Concepts: A Systematic Review Current Bioinformatics Yuntao Yang, Xu Zuo, Avisha Das, Hua Xu, Wenjin Zheng
2023	Predictive Recognition of DNA-binding Proteins Based on Pre-trained Language Model BERT Journal of Bioinformatics and Computational Biology Yue Ma, Yongzhen Pei, Changguo Li
2023	Identification of DNA-binding protein based multiple kernel model Mathematical Biosciences and Engineering Yuqing Qian, Tingting Shang, Fei Guo, Chunliang Wang, Zhiming Cui, Yijie Ding, Hongjie Wu
2023	Transcription factor-based biosensors for screening and dynamic regulation Frontiers in Bioengineering and Biotechnology Jonathan Tellechea-Luzardo, Martin T. Stiebritz, Pablo Carbonell
2023	PlDBPred: a novel computational model for discovery of DNA binding proteins in plants Briefings in Bioinformatics Upendra Kumar Pradhan, Prabina Kumar Meher, Sanchita Naha, Soumen Pal, Ajit Gupta, Rajender Parsad
2023	SaPt-CNN-LSTM-AR-EA: a hybrid ensemble learning framework for time series-based multivariate DNA sequence prediction PeerJ Wu Yan, Li Tan, Li Meng-Shan, Sheng Sheng, Wang Jun, Wu Fu-an
2023	LED-Display Defect Detection Based on YOLOv5 and Transformer IEEE Access Jinwoo Park, Jihun Bae, Jongeon Lim, Byeongchan Kim, Jongpil Jeong
2023	Algorithms for Intelligent Systems B. Siva Jyothi Natha Reddy, Sarthak Yadav, R. Venkatakrishnan, I. R. Oviya
2022	Hybrid_DBP: Prediction of DNA-binding proteins using hybrid features and convolutional neural networks Frontiers in Pharmacology Shaoyou Yu, Dejun Peng, Wen Zhu, Bo Liao, Peng Wang, Dongxuan Yang, Fangxiang Wu
2022	DNA-binding protein prediction based on deep transfer learning Mathematical Biosciences and Engineering Jun Yan, Tengsheng Jiang, Junkai Liu, Yaoyao Lu, Shixuan Guan, Haiou Li, Hongjie Wu, Yijie Ding
2022	Improved Prediction Model of Protein Lysine Crotonylation Sites Using Bidirectional Recurrent Neural Networks Journal of Proteome Research Sian Soo Tng, Nguyen Quoc Khanh Le, Hui-Yuan Yeh, Matthew Chin Heng Chua
2022	DBP-iDWT: Improving DNA-Binding Proteins Prediction Using Multi-Perspective Evolutionary Profile and Discrete Wavelet Transform Computational Intelligence and Neuroscience Farman Ali, Omar Barukab, Ajay B Gadicha, Shruti Patil, Omar Alghushairy, Akram Y. Sarhan
2022	Lecture Notes on Data Engineering and Communications Technologies Sara Saber, Uswah Khairuddin, Rubiyah Yusof
2022	Single-Stranded DNA Binding Proteins and Their Identification Using Machine Learning-Based Approaches Biomolecules Jun-Tao Guo, Fareeha Malik
2022	Identification of potential driver mutations in glioblastoma using machine learning Briefings in Bioinformatics Medha Pandey, P Anoosha, Dhanusha Yesudhas, M Michael Gromiha
2022	Research on DNA-Binding Protein Identification Method Based on LSTM-CNN Feature Fusion Computational and Mathematical Methods in Medicine Weizhong Lu, Xiaoyi Chen, Yu Zhang, Hongjie Wu, Yijie Ding, Jiawei Shen, Shixuan Guan, Haiou Li
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