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2025	gymnotoa-db: a database and application to optimize functional annotation in gymnosperms Database Fernando Mora-Márquez, Mikel Hurtado, Unai López de Heredia
2025	Missing genotype imputation in non‐model species using self‐organizing maps Molecular Ecology Resources Fernando Mora‐Márquez, Juan Carlos Nuño, Álvaro Soto, Unai López de Heredia
2025	Physiological and molecular response to drought in somatic plants from Pinus radiata embryonal masses induced at high temperatures Plant Physiology and Biochemistry Mikel Hurtado, Sonia Suarez-Álvarez, Ander Castander-Olarieta, Itziar A. Montalbán, Pablo G. Goicoechea, Unai López de Heredia, Daniel Marino, Paloma Moncaleán
2024	Closha 2.0: a bio-workflow design system for massive genome data analysis on high performance cluster infrastructure BMC Bioinformatics Gunhwan Ko, Pan-Gyu Kim, Byung-Ha Yoon, JaeHee Kim, Wangho Song, IkSu Byeon, JongCheol Yoon, Byungwook Lee, Young-Kuk Kim
2023	DEGoldS: A Workflow to Assess the Accuracy of Differential Expression Analysis Pipelines through Gold-standard Construction Current Bioinformatics Mikel Hurtado, Fernando Mora-Márquez, Álvaro Soto, Daniel Marino, Pablo G. Goicoechea, Unai López de Heredia
2022	Data Integration Challenges for Machine Learning in Precision Medicine Frontiers in Medicine Mireya Martínez-García, Enrique Hernández-Lemus
2021	RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis BMC Bioinformatics Alessandro La Ferlita, Salvatore Alaimo, Sebastiano Di Bella, Emanuele Martorana, Georgios I. Laliotis, Francesco Bertoni, Luciano Cascione, Philip N. Tsichlis, Alfredo Ferro, Roberta Bosotti, Alfredo Pulvirenti
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