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2025	Sequence-Based Protein–Protein Interaction Prediction and Its Applications in Drug Discovery Cells François Charih, James R. Green, Kyle K. Biggar
2025	Transformer-based deep learning ensemble framework predicts autism spectrum disorder using health administrative and birth registry data Scientific Reports Kevin Dick, Emily Kaczmarek, Robin Ducharme, Alexa C. Bowie, Alysha L.J. Dingwall-Harvey, Heather Howley, Steven Hawken, Mark C. Walker, Christine M. Armour
2025	A graph neural network-based approach for predicting SARS-CoV-2–human protein interactions from multiview data PLOS One Sumanta Ray, Syed Alberuni, Alexander Schönhuth
2024	Graph embedding on mass spectrometry- and sequencing-based biomedical data BMC Bioinformatics Edwin Alvarez-Mamani, Reinhard Dechant, César A. Beltran-Castañón, Alfredo J. Ibáñez
2023	Large-scale data mining pipeline for identifying novel soybean genes involved in resistance against the soybean cyst nematode Frontiers in Bioinformatics Nour Nissan, Julia Hooker, Eric Arezza, Kevin Dick, Ashkan Golshani, Benjamin Mimee, Elroy Cober, James Green, Bahram Samanfar
2023	Role of molecular mimicry in the SARS-CoV-2-human interactome for pathogenesis of cardiovascular diseases: An update to ImitateDB Computational Biology and Chemistry Sonali Tayal, Sonika Bhatnagar
2023	Omics approaches and technologies in COVID-19 Fares Al-Ejeh, Maysaloun Merhi, Mariam Al-Muftah, Queenie Fernandes, Lobna Al-Zaidan, Takwa Bedhiafi, Sarra Mestiri, Dina Moustafa, Nassiba Taib, Varghese Inchakalody, Afsheen Raza, Shahab Uddin, Said Dermime
2022	Reciprocal perspective as a super learner improves drug-target interaction prediction (MUSDTI) Scientific Reports Kevin Dick, Daniel G. Kyrollos, Eric D. Cosoreanu, Joseph Dooley, Joshua S. Fryer, Shaun M. Gordon, Nikhil Kharbanda, Martin Klamrowski, Patrick N. L. LaCasse, Thomas F. Leung, Muneeb A. Nasir, Chang Qiu, Aisha S. Robinson, Derek Shao, Boyan R. Siromahov, Evening Starlight, Christophe Tran, Christopher Wang, Yu-Kai Yang, James R. Green
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