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2025	The population chloroplast genomes of Populus reveal the phylogenetic relationship between three new taxa of sect. Leucoides and their parents BMC Genomics Yujie Shi, Jingliang Huang, Xueqin Wan, Jinglian Shi, Zhen Chen, Wei Zeng
2025	Complete chloroplast genomes of three Polygala species and indel marker development for identification of authentic polygalae radix (Polygala tenuifolia) Genes & Genomics Sumin Jeong, Jong Won Han, Yeseul Kim, Eunjeong Bak, Kyung Ho Ma, Jeong Hoon Lee, Jin Tae Jung, Inkyu Park
2025	The organelle genomes of the endangered seagrass Zostera caespitosa reveal sequence divergences, massive gene transfer, and uncommon RNA editing types Frontiers in Plant Science Yushun Yong, Yulian Wang, Dawei Wang, Xingfang Yuan, Quansheng Zhang
2025	Analysis of Codon Usage Patterns in a Rare Palmitoleic Acid Production Oleaginous Yeast, Scheffersomyces segobiensis Current Microbiology Lili Zhang, Wenxing Cui, Dandan Tang, Haohong Lin, Weiliang Dong, Xiujuan Qian, Min Jiang
2025	Comparative Analysis of Codon Usage Patterns in the Chloroplast Genomes of Fagopyrum Species Agronomy Qilin Liu, Shurui Li, Dinghong He, Jinyu Liu, Xiuzhi He, Chengruizhi Lin, Jinze Li, Zhixuan Huang, Linkai Huang, Gang Nie, Xinquan Zhang, Guangyan Feng
2025	Analysis of the Codon Usage Bias Pattern in the Chloroplast Genomes of Chloranthus Species (Chloranthaceae) Genes Jisi Zhang, Miao Feng
2025	RNA editing sites in coding sequences of ABO blood group alleles Human Immunology Supriyo Chakraborty, Deepika Sharma, Joydeep Chandra Das, Srinjay Kumar Bharadaj, Stella Bharadaj
2024	Comparative Analysis of Chloroplast Genomes of “Tiantai Wu-Yao” (Lindera aggregata) and Taxa of the Same Genus and Different Genera Genes Yujie Shi, Zhen Chen, Jingyong Jiang, Xiaobai Li, Wei Zeng
2024	A Detailed Analysis of Codon Usages Bias and Affecting Factors in the Topoisomerase II Gene of Invertebrate iridescent virus 6 Afyon Kocatepe University Journal of Sciences and Engineering Yeşim Aktürk Dizman
2024	Analysis of Codon Usage Bias in Chloroplast Genomes of Dryas octopetala var. asiatica (Rosaceae) Genes Lizhen Ling, Shudong Zhang, Tao Yang
2024	Comparative Study on Codon Usage Patterns across Chloroplast Genomes of Eighteen Taraxacum Species Horticulturae Yang Yang, Xingliang Wang, Zhenjie Shi
2024	The Mendelian pea pan-plastome: insights into genomic structure, evolutionary history, and genetic diversity of an essential food crop Genomics Communications Junhu Kan, Liyun Nie, Meixia Wang, Ravi Tiwari, Luke R. Tembrock, Jie Wang
2024	The complete Chloroplast genome of Stachys geobombycis and comparative analysis with related Stachys species Scientific Reports Ru Wang, Zheng Lan, Yongjian Luo, Zhijun Deng
2024	The complete chloroplast genome of Mussaenda pubescens and phylogenetic analysis Scientific Reports Caibi Zhou, Fang Tao, Rupiao Long, Xiaoting Yang, Xingli Wu, Lan Xiang, Xiaolu Zhou, Teerayoot Girdthai
2024	RNA editing sites and triplet usage in exomes of bat RNA virus genomes of the family Paramyxoviridae Microbial Pathogenesis Deepika Sharma, Supriyo Chakraborty
2023	Comparative analysis of codon usage patterns in chloroplast genomes of ten Epimedium species BMC Genomic Data Yingzhe Wang, Dacheng Jiang, Kun Guo, Lei Zhao, Fangfang Meng, Jinglei Xiao, Yuan Niu, Yunlong Sun
2023	Comparative and phylogenetic analysis of the complete chloroplast genomes of Uncaria (Rubiaceae) species Frontiers in Plant Science Jiangpeng Dai, Qiaozhen Liu, Xingyuan Xu, Zhijie Tan, Yuexia Lin, Xiaoxia Gao, Shuang Zhu
2023	Synonymous Codon Usage Bias in the Chloroplast Genomes of 13 Oil-Tea Camellia Samples from South China Forests Jing Chen, Wuqiang Ma, Xinwen Hu, Kaibing Zhou
2023	Phylogeny and adaptive evolution of subgenus Rhizirideum (Amaryllidaceae, Allium) based on plastid genomes BMC Plant Biology Xiao Fu, Deng-Feng Xie, Yu-Yang Zhou, Rui-Yu Cheng, Xiang-Yi Zhang, Song-dong Zhou, Xing-Jin He
2023	Comparative Analysis of Codon Usage Patterns in Nuclear and Chloroplast Genome of Dalbergia (Fabaceae) Genes Zu-Kai Wang, Yi Liu, Hao-Yue Zheng, Min-Qiang Tang, Shang-Qian Xie
2023	Assembly, annotation and analysis of the chloroplast genome of the Algarrobo tree Neltuma pallida (subfamily: Caesalpinioideae) BMC Plant Biology Esteban Caycho, Renato La Torre, Gisella Orjeda
2023	Codon Usage Analyses Reveal the Evolutionary Patterns among Plastid Genes of Saxifragales at a Larger-Sampling Scale Genes De Bi, Shiyun Han, Jun Zhou, Maojin Zhao, Sijia Zhang, Xianzhao Kan
2022	Chloroplast gene expression level is negatively correlated with evolutionary rates and selective pressure while positively with codon usage bias in Ophioglossum vulgatum L BMC Plant Biology Jing Hao, Yingyi Liang, Jingyao Ping, Jinye Li, Wanxin Shi, Yingjuan Su, Ting Wang
2022	Analysis of codon usage pattern in Lonicera × heckrottii ‘Gold Flame’ based on chloroplast genome Notulae Botanicae Horti Agrobotanici Cluj-Napoca Jiaqiang ZHANG, Huichun LIU, Wenting XU, Kaiyuan ZHU
2022	Complete chloroplast genome of Boesenbergia rotunda and a comparative analysis with members of the family Zingiberaceae Brazilian Journal of Botany Yvonne Jing Mei Liew, Kah-Ooi Chua, Hoi-Sen Yong, Sze-Looi Song, Kok-Gan Chan
2022	Plastome evolution of Aeonium and Monanthes (Crassulaceae): insights into the variation of plastomic tRNAs, and the patterns of codon usage and aversion Planta Shiyun Han, De Bi, Ran Yi, Hengwu Ding, Longhua Wu, Xianzhao Kan
2022	Comparative Plastome Analyses of Ephedra przewalskii and E. monosperma (Ephedraceae) Diversity Shuang Han, Mingze Xia, Jingya Yu, Hao Xu, Yun Han, Faqi Zhang
2022	Genetic markers in Andean Puya species (Bromeliaceae) with implications on plastome evolution and phylogeny Ecology and Evolution Lu Liu, Yu‐Qu Zhang, Liscely Tumi, Mery L. Suni, Mónica Arakaki, Kevin S. Burgess, Xue‐Jun Ge
2022	Codon usage bias analysis of the chloroplast genome of cassava South African Journal of Botany Xiaoshan Geng, Ning Huang, Yulin Zhu, Liu Qin, Ling Hui
2022	Comparative Analysis of the Chloroplast Genome for Aconitum Species: Genome Structure and Phylogenetic Relationships Frontiers in Genetics Conglong Xia, Manjiong Wang, Yunhui Guan, Jian Li
2022	Comparative Plastome Analysis of Three Amaryllidaceae Subfamilies: Insights into Variation of Genome Characteristics, Phylogeny, and Adaptive Evolution BioMed Research International Rui-Yu Cheng, Deng-Feng Xie, Xiang-Yi Zhang, Xiao Fu, Xing-Jin He, Song-Dong Zhou
2022	Context-Dependent Mutation Dynamics, Not Selection, Explains the Codon Usage Bias of Most Angiosperm Chloroplast Genes Journal of Molecular Evolution Brian R. Morton
2021	Comparative Analysis of Genomic and Transcriptome Sequences Reveals Divergent Patterns of Codon Bias in Wheat and Its Ancestor Species Frontiers in Genetics Chenkang Yang, Qi Zhao, Ying Wang, Jiajia Zhao, Ling Qiao, Bangbang Wu, Suxian Yan, Jun Zheng, Xingwei Zheng
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