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2025
Novel antiluminal breast cancer and immunological activities of Sidr and SidrZamZam honeys and their biogenic AgNPs
Scientific Reports
2025
Computational Systems Biology Methods for Cross‐Disease Comparison of Omics Data
WIREs Computational Molecular Science
2025
Identification of a rare variant in TNNT3 responsible for familial dilated cardiomyopathy through whole-exome sequencing and in silico analysis
European Journal of Medical Research
2024
Long noncoding RNA GATA2AS influences human erythropoiesis by transcription factor and chromatin landscape modulation
Blood
2024
The influence of small seaweed-mussel associations upon local-scale biodiversity at a Marine Protected Area in Atlantic Canada
Marine Biology
2024
A comprehensive review of the data and knowledge graphs approaches in bioinformatics
Computer Science and Information Systems
2024
The impact of host microRNAs on the development of conserved mutations of SARS-CoV-2
Scientific Reports
2024
The phosphatase DUSP22 inhibits UBR2-mediated K63-ubiquitination and activation of Lck downstream of TCR signalling
Nature Communications
2023
Bioinformatics and cheminformatics approaches to identify pathways, molecular mechanisms and drug substances related to genetic basis of cervical cancer
Journal of Biomolecular Structure and Dynamics
2022
Functional validation of variants of unknown significance using CRISPR gene editing and transcriptomics: A Kleefstra syndrome case study
Gene
2022
Transcription Factors YAP/TAZ and SRF Cooperate To Specify Renal Myofibroblasts in the Developing Mouse Kidney
Journal of the American Society of Nephrology
2022
Communications in Computer and Information Science
2022
Overcoming Sparseness of Biomedical Networks to Identify Drug Repositioning Candidates
IEEE/ACM Transactions on Computational Biology and Bioinformatics
2022
Crohn’s Disease and Early Exposure to Thiopurines are Independent Risk Factors for Mosaic Chromosomal Alterations in Patients with Inflammatory Bowel Diseases
Journal of Crohn's and Colitis
2022
Expanding a database-derived biomedical knowledge graph via multi-relation extraction from biomedical abstracts
BioData Mining
2022
Complementary evolution of coding and noncoding sequence underlies mammalian hairlessness
eLife
2022
Larynx proteomics after jellyfish collagen IL: Increased ECM/collagen and suppressed inflammation
Laryngoscope Investigative Otolaryngology
2022
Large-Scale Multi-Omics Studies Provide New Insights into Blood Pressure Regulation
International Journal of Molecular Sciences
2021
Three Signatures of Adaptive Polymorphism Exemplified by Malaria-Associated Genes
Molecular Biology and Evolution
2021
MicroRNAs for Virus Pathogenicity and Host Responses, Identified in SARS-CoV-2 Genomes, May Play Roles in Viral-Host Co-Evolution in Putative Zoonotic Host Species
Viruses
2021
Genomic Signatures of Coevolution between Nonmodel Mammals and Parasitic Roundworms
Molecular Biology and Evolution
2021
Loss of the fragile X syndrome protein FMRP results in misregulation of nonsense-mediated mRNA decay
Nature Cell Biology
2021
High-quality reference genome of Fasciola gigantica: Insights into the genomic signatures of transposon-mediated evolution and specific parasitic adaption in tropical regions
PLOS Neglected Tropical Diseases
2021
Grand Challenges in Bioinformatics Data Visualization
Frontiers in Bioinformatics
2020
Identification and characterization of cellular heterogeneity within the developing renal interstitium
Development
2020
Interaction screening by Kendall’s partial correlation for ultrahigh-dimensional data with survival trait
Bioinformatics
2020
Combination Treatment with GSK126 and Pomalidomide Induces B-Cell Differentiation in EZH2 Gain-of-Function Mutant Diffuse Large B-Cell Lymphoma
Cancers
2020
CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision
Bioinformatics
2020
Dynamics of a Protein Interaction Network Associated to the Aggregation of polyQ-Expanded Ataxin-1
Genes
2020
Implications of SARS-CoV-2 Mutations for Genomic RNA Structure and Host microRNA Targeting
International Journal of Molecular Sciences
2019
Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources
Briefings in Bioinformatics
2019
Epimutations in Developmental Genes Underlie the Onset of Domestication in Farmed European Sea Bass
Molecular Biology and Evolution
2019
The Promoter Regions of Intellectual Disability-Associated Genes Are Uniquely Enriched in LTR Sequences of the MER41 Primate-Specific Endogenous Retrovirus: An Evolutionary Connection Between Immunity and Cognition
Frontiers in Genetics
2019
LSD1 Cooperates with Noncanonical NF-κB Signaling to Regulate Marginal Zone B Cell Development
The Journal of Immunology
2019
Genetic meta-analysis of diagnosed Alzheimer’s disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing
Nature Genetics
2019
Methods in Molecular Biology
2019
Dysplastic oral leukoplakia is molecularly distinct from leukoplakia without dysplasia
Oral Diseases
2019
Design, implementation, and operation of a rapid, robust named entity recognition web service
Journal of Cheminformatics
2019
Methods in Molecular Biology
2019
Analysis of Predicted Host–Parasite Interactomes Reveals Commonalities and Specificities Related to Parasitic Lifestyle and Tissues Tropism
Frontiers in Immunology
2018
Context-dependent prediction of protein complexes by SiComPre
npj Systems Biology and Applications
2018
Site-specific characterization of endogenous SUMOylation across species and organs
Nature Communications
2018
Coding and Non-coding RNAs, the Frontier Has Never Been So Blurred
Frontiers in Genetics
2018
Systematic interrogation of diverse Omic data reveals interpretable, robust, and generalizable transcriptomic features of clinically successful therapeutic targets
PLOS Computational Biology
2018
A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts
PLOS Computational Biology
2018
TISSUES 2.0: an integrative web resource on mammalian tissue expression
Database
2018
Rare Variants in Known Susceptibility Loci and Their Contribution to Risk of Lung Cancer
Journal of Thoracic Oncology
2018
Adding biological meaning to human protein-protein interactions identified by yeast two-hybrid screenings: A guide through bioinformatics tools
Journal of Proteomics
2017
Computational polypharmacology: a new paradigm for drug discovery
Expert Opinion on Drug Discovery
2017
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
Nucleic Acids Research
2017
Systematic integration of biomedical knowledge prioritizes drugs for repurposing
eLife
2017
The BRENDA enzyme information system–From a database to an expert system
Journal of Biotechnology
2017
Neuroinflammation and ALS: Transcriptomic Insights into Molecular Disease Mechanisms and Therapeutic Targets
Mediators of Inflammation
2017
Gene ORGANizer: linking genes to the organs they affect
Nucleic Acids Research
2017
CORNAS: coverage-dependent RNA-Seq analysis of gene expression data without biological replicates
BMC Bioinformatics
2017
miRNAs in human subcutaneous adipose tissue: Effects of weight loss induced by hypocaloric diet and exercise
Obesity
2017
Drug target ontology to classify and integrate drug discovery data
Journal of Biomedical Semantics
2016
Genic insights from integrated human proteomics in GeneCards
Database
2016
Overview of the interactive task in BioCreative V
Database
2016
STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data
Nucleic Acids Research
2016
Comparative analysis of housekeeping and tissue-specific driver nodes in human protein interaction networks
BMC Bioinformatics
2016
2016 IEEE International Conference on Big Data (Big Data)
2016
The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins
Database
2016
Integrative Networks Illuminate Biological Factors Underlying Gene–Disease Associations
Current Genetic Medicine Reports
2016
Data sources for in vivo molecular profiling of human phenotypes
WIREs Systems Biology and Medicine
2016
EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation
Database
2015
Impacts of Alternative Splicing Events on the Differentiation of Adipocytes
International Journal of Molecular Sciences
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