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2025
Trichoderma harzianum DQ002 Enhances Oriental Melon Resistance Against Fusarium oxysporum f.sp. melonis by Regulating Soil Microbial Communities in the Rhizosphere
Agronomy
2025
Effect of High-Fat Diet and Lactiplantibacillus plantarum 299v on the Gut Microbiome of Adolescent and Adult Rats
Obesities
2025
MicrobiomeStatPlots: Microbiome statistics plotting gallery for meta‐omics and bioinformatics
iMeta
2025
Prokaryotic diversity, function prediction, and community assembly in the Arabian Sea sediments linked to the extent of mesopelagic hypoxia
Marine Environmental Research
2025
Maternal aspartame exposure alters lung Th1/Th2 cytokine balance in offspring through nuclear factor-κB activation
International Immunopharmacology
2025
Effect of Multiyear Biodegradable Plastic Mulch on Soil Microbial Community, Assembly, and Functioning
Microorganisms
2025
Microbial diversity and metabolic potential in long-term Cr(VI) polluted soil during in situ biostimulation: a pilot effective assay
Environmental Science and Pollution Research
2025
Newly identified species from the dog dental plaque microbiome highlight little overlap with humans
npj Biofilms and Microbiomes
2025
Alteration of the gut microbiota in children following SARS- CoV-2 infection in 2021 and 2022 pandemics
Pediatrics & Neonatology
2025
Roles of oral and gut microbiota in acute myocardial infarction
Journal of Advanced Research
2025
Evaluation of the gastric microbiota based on body mass index using 16S rRNA gene sequencing
Frontiers in Cellular and Infection Microbiology
2025
Evaluation of gut microbiota alterations following orlistat administration in obese mice
Frontiers in Endocrinology
2025
Identification and characterization of a novel human adenovirus type HAdV-D116
Frontiers in Microbiology
2025
Alterations in the Microbiome of Horses Affected with Fecal Water Syndrome
Veterinary Sciences
2025
Temperature-dependent shifts in gut microbiota and metabolome of olive flounder (Paralichthys olivaceus): implications for cold-water aquaculture expansion and probiotic applications
Animal Microbiome
2025
Association of tumor microbiome with survival in resected early-stage PDAC
mSystems
2025
Global diversity and distribution of antibiotic resistance genes in human wastewater treatment systems
Nature Communications
2025
Differential impact of spotted fever group rickettsia and anaplasmosis on tick microbial ecology: evidence from multi-species comparative microbiome analysis
Frontiers in Microbiology
2025
Root interactions in wheat/fababean intercropping system enhanced growth performance and yield
Rhizosphere
2025
Effects of orally administered clioquinol on the fecal microbiome of horses
Journal of Veterinary Internal Medicine
2025
Comparative Analysis of Microbial–Short-Chain Fatty Acids–Epithelial Transport Axis in the Rumen Ecosystem Between Tarim Wapiti (Cervus elaphus yarkandensis) and Karakul Sheep (Ovis aries)
Microorganisms
2025
Gut microbiome and body composition with sorbitol intake during early lifespan
Nutrition
2025
16S rRNA Sequencing and Metabolomics Reveal Two-Stage Fermentation of Kudzu By-products: Implications for Hu Lambs Growth Performance
Waste and Biomass Valorization
2025
Gut Microbiota Alteration with Moderate-to-Vigorous-Intensity Exercise in Middle School Female Football Athletes
Biology
2025
Association of Decreased Fecal Microbiota Akkermansia with Increased High-Sensitivity C-Reactive Protein Levels in Patients with Unstable Angina
Current Medical Science
2025
Effect of molybdenum supply on crop performance through rhizosphere soil microbial diversity and metabolite variation
Frontiers in Plant Science
2025
Escherichia coli is implicated in the development and manifestation of host susceptibility to the roundworm Trichostrongylus colubriformis infections in sheep
Veterinary Research
2025
Severity of Brachyspira hyodysenteriae colitis correlates to the changes observed in the microbiota composition and its associated functionality in the large intestine
Animal Microbiome
2025
Integrative multi-omics analysis of autism spectrum disorder reveals unique microbial macromolecules interactions
Journal of Advanced Research
2025
A dynamic histone-based chromatin regulatory toolkit underpins genome and developmental evolution in an invertebrate clade
Genome Biology
2025
Comparative analysis of rhizosphere microbial communities and secondary metabolites in cultivated Rheum officinale from different regions of China
Frontiers in Plant Science
2025
Seasonal dietary shifts in an invasive snail Pomacea canaliculata revealed by 18S rRNA mtabarcoding
Current Zoology
2025
Associations between wooden-toys training and the gut microbiota function in male older adults with cognitive impairment: a single-arm intervention study
Current Psychology
2025
Microbiome analysis uncovers fruit-specific microbial community divergence between wild and cultivated watermelon varieties
Vegetable Research
2025
Diffusion kurtosis imaging biomarkers associated with amelioration of neuroinflammation, gray matter microstructural abnormalities, and gut dysbiosis by central thalamic deep brain stimulation in autistic -like young rats
NeuroImage
2025
Novel anti-inflammatory properties of mannose oligosaccharides in the treatment of inflammatory bowel disease via LGALS3 modulation
npj Biofilms and Microbiomes
2025
Springer Theses
2025
Multiomic analysis of different horse breeds reveals that gut microbial butyrate enhances racehorse athletic performance
npj Biofilms and Microbiomes
2025
The hypersaline northwestern Arabian Gulf contains a phylogenetically diverse and highly uneven community of viruses related to cyanophages and pelagiphages
Aquatic Microbial Ecology
2025
Gut microbiome and peritoneal inflammation: a new perspective on peritoneal dialysis-associated peritonitis
Renal Failure
2025
Niche Differentiation of Three Terrestrial Isopod Species Based on DNA Metabarcoding
Ecology and Evolution
2025
Blue mussel (Mytilus edulis L.) exposure to nylon microfibers leads to a shift in digestive gland microbiota
Environmental Pollution
2024
The gut-brain axis in depression: Are multi-omics showing the way?
Cell Reports Medicine
2024
Effect of Akkermansia muciniphila on pancreatic islet β-cell function in rats with prediabetes mellitus induced by a high-fat diet
Bioresources and Bioprocessing
2024
Tangeretin Mitigates Trimethylamine Oxide Induced Arterial Inflammation by Disrupting Choline–Trimethylamine Conversion through Specific Manipulation of Intestinal Microflora
Molecules
2024
Unexplored microbial diversity from 2,500 food metagenomes and links with the human microbiome
Cell
2024
Donor-recipient intermicrobial interactions impact transfer of subspecies and fecal microbiota transplantation outcome
Cell Host & Microbe
2024
Comprehensive profile of the companion animal gut microbiome integrating reference-based and reference-free methods
The ISME Journal
2024
A systematic comparison of natural product potential, with an emphasis on RiPPs, by mining of bacteria of three large ecosystems
Genomics
2024
Snowflake: visualizing microbiome abundance tables as multivariate bipartite graphs
Frontiers in Bioinformatics
2024
Effects of surface sterilization of fertile eggs on the yolk microbiota during the chicken embryo development
Frontiers in Veterinary Science
2024
Oral Microbiome and Subsequent Risk of Head and Neck Squamous Cell Cancer
JAMA Oncology
2024
Longitudinal multi-omics analysis uncovers the altered landscape of gut microbiota and plasma metabolome in response to high altitude
Microbiome
2024
Microbiome and metabolome dysbiosis analysis in impaired glucose tolerance for the prediction of progression to diabetes mellitus
Journal of Genetics and Genomics
2024
Ultraconserved bacteriophage genome sequence identified in 1300-year-old human palaeofaeces
Nature Communications
2024
An investigation of soil and groundwater metagenomes for genes encoding soluble and particulate methane monooxygenase, toluene-4-monoxygenase, propane monooxygenase and phenol hydroxylase
Archives of Microbiology
2024
Identification of commensal gut bacterial strains with lipogenic effects contributing to NAFLD in children
iScience
2024
Establishment of a non-Westernized gut microbiota in men who have sex with men is associated with sexual practices
Cell Reports Medicine
2024
Oral microbiome sequencing revealed the enrichment of Fusobacterium sp., Porphyromonas sp., Campylobacter sp., and Neisseria sp. on the oral malignant fibroma surface of giant panda
Frontiers in Cellular and Infection Microbiology
2024
Comparative Analysis of Microbial Communities in Diseased and Healthy Sweet Cherry Trees (Prunus avium L.)
Microorganisms
2024
Plant species and associated root nutritional traits influence soil dominant bacteria in coastal wetlands across China
New Phytologist
2024
Large-scale metagenomic analysis of oral microbiomes reveals markers for autism spectrum disorders
Nature Communications
2024
Tissue source may affect the esophageal flora in patients with esophageal squamous cell carcinoma
Oncology Letters
2024
F. prausnitzii potentially modulates the association between citrus intake and depression
Microbiome
2024
Comprehensive lung microbial gene and genome catalogs assist the mechanism survey of Mesomycoplasma hyopneumoniae strains causing pig lung lesions
iMeta
2024
Fermentation Parameters, Amino Acids Profile, Biogenic Amines Formation, and Bacterial Community of Ensiled Stylo Treated with Formic Acid or Sugar
Animals
2024
Pre-anaerobic phase persists benefits for nitrogen removal in high carbon/nitrogen scenarios: Comparative study of aerobic–anoxic and anaerobic–aerobic–anoxic sequencing batch reactors
Journal of Cleaner Production
2024
Ecological niches and assembly dynamics of diverse microbial consortia in the gastrointestine of goat kids
The ISME Journal
2024
Segatella clades adopt distinct roles within a single individual’s gut
npj Biofilms and Microbiomes
2024
Exploring the multifaceted therapeutic mechanism of Schisanlactone E (XTS) in APP/PS1 mouse model of Alzheimer’s disease through multi-omics analysis
Frontiers in Microbiology
2024
Altitude-dependent agro-ecologies impact the microbiome diversity of scavenging indigenous chicken in Ethiopia
Microbiome
2024
Multi-omics strategy reveals potential role of antimicrobial resistance and virulence factor genes responsible for Simmental diarrheic calves caused by Escherichia coli
mSystems
2024
Gut microbiota contributes to high-altitude hypoxia acclimatization of human populations
Genome Biology
2024
Associations Between Brain-Gut Axis and Psychological Distress in Fibromyalgia: A Microbiota and Magnetic Resonance Imaging Study
The Journal of Pain
2024
Uncovering pathway and mechanism of simultaneous thiocyanate detoxicity and nitrate removal through anammox and denitrification
npj Clean Water
2024
Evolution characteristics and molecular constraints of microbial communities during coal biogasification
Bioprocess and Biosystems Engineering
2024
Oncogenic human papillomavirus and anal microbiota in men who have sex with men and are living with HIV in Northern Taiwan
PLOS ONE
2024
Organizing Microbial Diversity and Interspecies Relations through Diagrams: Trees, Maps, and the Visual Semiotics of the Living
Biosemiotics
2024
Correlation between the gut microbiome and neurodegenerative diseases: a review of metagenomics evidence
Neural Regeneration Research
2024
Recovery of metagenome-assembled genomes from the rumen and fecal microbiomes of Bos indicus beef cattle
Scientific Data
2024
Longitudinal characterization of the captive adult and tadpole Wyoming toad (Anaxyrus baxteri) microbiome
Frontiers in Amphibian and Reptile Science
2024
Consumption of a Taiwanese cafeteria diet induces metabolic disorders and fecal flora changes in obese rats
Nutrition
2024
Microbiome homeostasis on rice leaves is regulated by a precursor molecule of lignin biosynthesis
Nature Communications
2024
Reference gene catalog and metagenome-assembled genomes from the gut microbiome reveal the microbial composition, antibiotic resistome, and adaptability of a lignocellulose diet in the giant panda
Environmental Research
2024
Divergent Gut Microbiota: Archaeal and Bacterial Signatures Unveil Unique Patterns in Colombian Cyclists Compared to Weightlifters and Non‐Athletes
Advanced Biology
2024
CoCas9 is a compact nuclease from the human microbiome for efficient and precise genome editing
Nature Communications
2024
Quorum-Sensing Signal DSF Inhibits the Proliferation of Intestinal Pathogenic Bacteria and Alleviates Inflammatory Response to Suppress DSS-Induced Colitis in Zebrafish
Nutrients
2024
The gut microbiota in persistent post-operative pain following breast cancer surgery
Scientific Reports
2024
Drought-induced assembly of rhizosphere mycobiomes shows beneficial effects on plant growth
mSystems
2024
Plastic mulch stimulates denitrification by interaction between soil environment and denitrifying bacteria
Plant and Soil
2024
Intestinal microbiota dataset revealed by high-throughput sequencing of 16S rRNA in children with anemia in southern Peru
Data in Brief
2024
Plant growth-promoting effects of a novel Lelliottia sp. JS-SCA-14 and comparative genome analysis
Frontiers in Plant Science
2024
Bioactive glycans in a microbiome-directed food for children with malnutrition
Nature
2024
EnsembleSeq: a workflow towards real-time, rapid, and simultaneous multi-kingdom-amplicon sequencing for holistic and resource-effective microbiome research at scale
Microbiology Spectrum
2024
Amelioration of the brain structural connectivity is accompanied with changes of gut microbiota in a tuberous sclerosis complex mouse model
Translational Psychiatry
2024
Dysregulation of Microbiota in Patients With First-Episode Psychosis Is Associated With Symptom Severity and Treatment Response
Biological Psychiatry
2024
Investigating the addition of Fe for improving contaminant removal and regulating microbes in a simulated coastal wetland
Environmental Science and Pollution Research
2024
Experimental research on biogenic methane generation pathway and microflora constraints based on in-situ gas-water-microbe
Fuel
2023
Fecal microbiota transplantation improves hepatic fibro-inflammation via regulating oxidative stress in experimental NASH
Digestive and Liver Disease
2023
Genome wide analysis revealed conserved domains involved in the effector discrimination of bacterial type VI secretion system
Communications Biology
2023
Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse
Microbiome
2023
Transformer-based tool recommendation system in Galaxy
BMC Bioinformatics
2023
Bioinformatic approaches for studying the microbiome of fermented food
Critical Reviews in Microbiology
2023
Impact of the gut microbiome on immunological responses to COVID-19 vaccination in healthy controls and people living with HIV
npj Biofilms and Microbiomes
2023
Molecular Identification and Fungal Diversity Associated with Diseases in Hass Avocado Fruit Grown in Cauca, Colombia
Pathogens
2023
Flux Improvement and Biofilm Performance of an Oblique Gravity-Driven Ceramic Membrane Bioreactor Coupled with Electrocoagulation for Roofing Rainwater Purification
ACS ES&T Engineering
2023
Metagenomic Analysis of Intratumoral Microbiome Linking to Response to Neoadjuvant Chemoradiotherapy in Rectal Cancer
International Journal of Radiation Oncology*Biology*Physics
2023
Effects of Peroral Microbiota Transplantation on the Establishment of Intestinal Microorganisms in a Newly-Hatched Chick Model
Agriculture
2023
Alterations of the intestinal microbiome and metabolome in women with rheumatoid arthritis
Clinical and Experimental Medicine
2023
Integration analysis of tumor metagenome and peripheral immunity data of diffuse large-B cell lymphoma
Frontiers in Immunology
2023
Characteristics of methane emissions from alpine thermokarst lakes on the Tibetan Plateau
Nature Communications
2023
Assessment and comparison of rhizosphere communities in cultivated Vaccinium spp. provide a baseline for study of causative agents in decline
Frontiers in Plant Science
2023
Uncovering Bacterial Diversity during Mesophilic and Thermophilic Phases of Biowaste Composting through Next-Generation Sequencing
Applied Sciences
2023
Compositional and functional aberrance of the gut microbiota in treatment naïve patients with primary Sjögren's syndrome [J. Autoimmun., 134, January 2023, 102958]
Journal of Autoimmunity
2023
Intranasal administration of Lactobacillus johnsonii attenuates hyperoxia-induced lung injury by modulating gut microbiota in neonatal mice
Journal of Biomedical Science
2023
BLASTphylo: An Interactive Web Tool for Taxonomic and Phylogenetic Analysis of Prokaryotic Genes
Journal of Computational Biology
2023
Plasmon-activated water as a therapeutic strategy in Alzheimer’s disease by altering gut microbiota
Aging
2023
Metagenomics to Bioremediation
2023
ILC3s restrict the dissemination of intestinal bacteria to safeguard liver regeneration after surgery
Cell Reports
2023
Agro-Based Spent Mushroom Compost Substrates Improve Soil Properties and Microbial Diversity in Greenhouse Tomatoes
Agronomy
2023
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
Nature Biotechnology
2023
Elucidating the functional roles of prokaryotic proteins using big data and artificial intelligence
FEMS Microbiology Reviews
2023
Assembly of novel microbial genomes from gut metagenomes of rhesus macaque ( Macaca mulatta )
Gut Microbes
2023
Extension of the Segatella copri complex to 13 species with distinct large extrachromosomal elements and associations with host conditions
Cell Host & Microbe
2023
Intestinal microbiota analyses of five economic fishery resources in the South China Sea
Comparative Biochemistry and Physiology Part D: Genomics and Proteomics
2023
Advances in Health Sciences Research
2023
Proceedings of the 2023 15th International Conference on Bioinformatics and Biomedical Technology
2023
Multi-omics analysis of fecal samples in colorectal cancer Egyptians patients: a pilot study
BMC Microbiology
2023
Microbiome Network Connectivity and Composition Linked to Disease Resistance in Strawberry Plants
Phytobiomes Journal
2023
Operation of air conditioners affects the microbial pathogenic potential in bedrooms: A metagenomics and culture-dependent study
Building and Environment
2023
Oral microbiota may affect osteoradionecrosis following radiotherapy for head and neck cancer
Journal of Translational Medicine
2023
Flavonoids extract from Rosa roxburghii fruit ameliorates carrageenan-induced thrombosis in mice
Journal of Functional Foods
2023
A novel lytic polysaccharide monooxygenase from enrichment microbiota and its application for shrimp shell powder biodegradation
Frontiers in Microbiology
2023
Starch-entrapped microspheres enhance gut microbiome-mediated anti-obesity effects of resistant starch in high-fat diet induced obese C57BL/6J mice
Food Research International
2023
The Cystic Fibrosis Upper and Lower Airway Metagenome
Microbiology Spectrum
2023
Culturomics- and metagenomics-based insights into the microbial community and function of rhizosphere soils in Sinai desert farming systems
Environmental Microbiome
2023
metaSpectraST: an unsupervised and database-independent analysis workflow for metaproteomic MS/MS data using spectrum clustering
Microbiome
2023
Effects of Two Feeding Patterns on Growth Performance, Rumen Fermentation Parameters, and Bacterial Community Composition in Yak Calves
Microorganisms
2023
Genetic diversity and characterization of rhinoviruses from Chinese clinical samples with a global perspective
Microbiology Spectrum
2023
The hidden diversity of microbes in ballast water and sediments revealed by metagenomic sequencing
Science of The Total Environment
2023
Anaerobic biotransformation of sulfonated anthraquinones by Pseudomonas nitroreducens WA and the fate of the sulfonic acid group in the presence of nitrate
Journal of Hazardous Materials
2023
GPR35‐mediated kynurenic acid sensing contributes to maintenance of gut microbiota homeostasis in ulcerative colitis
FEBS Open Bio
2023
Baseline gut microbial profiles are associated with the efficacy of Bacillus subtilis and Enterococcus faecium in IBS-D
Scandinavian Journal of Gastroenterology
2023
What determines plant species diversity along the Modern Silk Road in the east?
iMeta
2023
Differences in the diversity and community structure of the intestinal microbiota of commercial fishes in the central and southern East China Sea in spring and autumn
Environmental Biology of Fishes
2023
Dissecting the microbial community structure of internal organs during the early postmortem period in a murine corpse model
BMC Microbiology
2023
Taxonomic and functional profiling of fecal metagenomes for the early detection of colorectal cancer
Frontiers in Oncology
2023
Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes
Science Translational Medicine
2023
A glance at the gut microbiota and the functional roles of the microbes based on marmot fecal samples
Frontiers in Microbiology
2023
Composition and evolutionary characterization of the gut microbiota in pigs
International Microbiology
2023
Nodulation number tempers the relative importance of stochastic processes in the assembly of soybean root-associated communities
ISME Communications
2023
Sequence-Based Functional Metagenomics Reveals Novel Natural Diversity of Functional CopA in Environmental Microbiomes
Genomics, Proteomics & Bioinformatics
2023
Arsenic-Containing Medicine Treatment Disturbed the Human Intestinal Microbial Flora
Toxics
2023
The multi-kingdom microbiome of the goat gastrointestinal tract
Microbiome
2023
A peptide encoded by a highly conserved gene belonging to the genus Streptomyces shows antimicrobial activity against plant pathogens
Frontiers in Plant Science
2023
Large-Scale Integration of Amplicon Data Reveals Massive Diversity within Saprospirales, Mostly Originating from Saline Environments
Microorganisms
2023
Compositional and functional aberrance of the gut microbiota in treatment-naïve patients with primary Sjögren's syndrome
Journal of Autoimmunity
2023
Diversity and Prevalence of Clostridium innocuum in the Human Gut Microbiota
mSphere
2023
Application of Sophora alopecuroides organic fertilizer changes the rhizosphere microbial community structure of melon plants and increases the fruit sugar content
Journal of the Science of Food and Agriculture
2023
3L, Three-Lactobacilli on Recovering of Microbiome and Immune-Damage by Cyclophosphamide Chemotherapy—A Pilot Experiment in Rats
Microbiology Research
2023
An ancient metalloenzyme evolves through metal preference modulation
Nature Ecology & Evolution
2022
Molecular, Phenotypical, and Host-Range Characterization of Robbsia andropogonis Strains Isolated from Bougainvillea spp. in Mexico
Plant Disease
2022
Long-Term, Simultaneous Impact of Antimicrobials on the Efficiency of Anaerobic Digestion of Sewage Sludge and Changes in the Microbial Community
Energies
2022
Complementary Strategies for Deciphering the Information Contained in Ancient Parchment Documentary Materials
Applied Sciences
2022
Effect of heat stress on ileal microbial community of indigenous yellow‐feather broilers based on 16S rRNA gene sequencing
Veterinary Medicine and Science
2022
Metagenomics analysis of the fecal microbiota in Ring-necked pheasants (Phasianus colchicus) and Green pheasants (Phasianus versicolor) using next generation sequencing
Saudi Journal of Biological Sciences
2022
Using Shotgun Sequencing to Describe the Changes Induced by In-Feed Zinc Oxide and Apramycin in the Microbiomes of Pigs One Week Postweaning
Microbiology Spectrum
2022
A metagenome-wide association study of the gut microbiota in recurrent aphthous ulcer and regulation by thalidomide
Frontiers in Immunology
2022
Expression of divergent methyl/alkyl coenzyme M reductases from uncultured archaea
Communications Biology
2022
Response of Gut Microbiota, Digestive Enzyme Ability, and Immune Function to Starvation in the Oriental River Prawn Macrobrachium nipponense
Aquaculture Nutrition
2022
Rhizosphere Soil Microbial Survival States and N-Related Process during Riparian Plant Dormancy: Influences of Plant Locations and Plant Species
Diversity
2022
Enrichment of DNRA bacteria: Shift of microbial community and its combination with anammox to promote TN removal
Journal of Environmental Chemical Engineering
2022
Effects of environmental factors on soil bacterial community structure and diversity in different contaminated districts of Southwest China mine tailings
Science of The Total Environment
2022
Community Structure of Phyllosphere Bacteria in Different Cultivars of Fingered Citron (Citrus medica ‘Fingered’) and Their Correlations With Fragrance
Frontiers in Plant Science
2022
An Insight into the Endophytic Bacterial Community of Tomato after Spray Application of Propiconazole and Bacillus subtilis Strain NBRI-W9
Microbiology Spectrum
2022
Metagenome assembly of high-fidelity long reads with hifiasm-meta
Nature Methods
2022
Multi-omic phenotyping reveals host-microbe responses to bariatric surgery, glycaemic control and obesity
Communications Medicine
2022
Alterations in the saliva microbiome in patients with gastritis and small bowel inflammation
Microbial Pathogenesis
2022
Deciphering functional redundancy and energetics of malate oxidation in mycobacteria
Journal of Biological Chemistry
2022
Characterization of interactions of dietary cholesterol with the murine and human gut microbiome
Nature Microbiology
2022
Functional Investigation of Plant Growth Promoting Rhizobacterial Communities in Sugarcane
Frontiers in Microbiology
2022
An Altered Microbiota in the Lower and Upper Female Reproductive Tract of Women with Recurrent Spontaneous Abortion
Microbiology Spectrum
2022
The effects of genital myiasis on the diversity of the vaginal microbiota in female Bactrian camels
BMC Veterinary Research
2022
Bacterial and archaeal communities within the alkaline soda Langaco Lake in the Qinghai-Tibet Plateau
Annals of Microbiology
2022
The Cropping Obstacle of Garlic Was Associated With Changes in Soil Physicochemical Properties, Enzymatic Activities and Bacterial and Fungal Communities
Frontiers in Microbiology
2022
Pea-Resistant Starch with Different Multi-scale Structural Features Attenuates the Obesity-Related Physiological Changes in High-Fat Diet Mice
Journal of Agricultural and Food Chemistry
2022
Altered gut microbiota correlates with behavioral problems but not gastrointestinal symptoms in individuals with autism
Brain, Behavior, and Immunity
2022
Experimental evaluation of ecological principles to understand and modulate the outcome of bacterial strain competition in gut microbiomes
The ISME Journal
2022
Changes in the cervicovaginal microbiota composition of HPV16‐infected patients after clinical treatment
Cancer Medicine
2022
Tree-Based Analysis of Dietary Diversity Captures Associations Between Fiber Intake and Gut Microbiota Composition in a Healthy US Adult Cohort
The Journal of Nutrition
2022
Towards heat tolerant metagenome functional prediction, coral microbial community composition, and enrichment analysis
Ecological Informatics
2022
Taxonomy Informed Clustering, an Optimized Method for Purer and More Informative Clusters in Diversity Analysis and Microbiome Profiling
Frontiers in Bioinformatics
2022
Camphor Seed Kernel Oil Beneficial Effects the Gut Microbiota of the Non-Alcoholic Fatty Liver Disease Mice
Frontiers in Bioscience-Landmark
2022
Uncovering the Fecal Bacterial Communities of Sympatric Sika Deer (Cervus nippon) and Wapiti (Cervus canadensis)
Animals
2022
Succession of the Gut Microbiome in the Tibetan Population of Minjiang River Basin
Frontiers in Microbiology
2022
Correlation analysis between differential metabolites and bacterial endophytes of Ephedra sinica in different years
Industrial Crops and Products
2022
Enrichment of Dnra Bacteria: Shift of Microbial Community and its Combination with Anammox to Promote Tn Removal
SSRN Electronic Journal
2022
Role of key-stone microbial taxa in algae amended soil for mediating nitrogen transformation
Science of The Total Environment
2022
Dynamic succession of microbial community in Nongxiangxing daqu and microbial roles involved in flavor formation
Food Research International
2022
Efficient removal of tetracycline using U-type continuous-flow bioelectrochemical system without ion exchange membrane or cathodic catalyst
Bioresource Technology
2022
Dietary antioxidant intake is inversely associated with 2,3-dinor oxylipin metabolites, the major excreted oxylipins in overweight and obese subjects
Free Radical Biology and Medicine
2022
Microbial Interdomain Interactions Delineate the Disruptive Intestinal Homeostasis in Clostridioides difficile Infection
Microbiology Spectrum
2022
The Role of Gut Microbiota in Neuropsychiatric Diseases – Creation of An Atlas-Based on Quantified Evidence
Frontiers in Cellular and Infection Microbiology
2022
Hi-C deconvolution of a textile dye–related microbiome reveals novel taxonomic landscapes and links phenotypic potential to individual genomes
International Microbiology
2022
Ferrous iron oxidation microflora from rust deposits improve the performance of bioelectrochemical system
Bioresource Technology
2022
Diversity analysis of leaf endophytic fungi and rhizosphere soil fungi of Korean Epimedium at different growth stages
Environmental Microbiome
2022
Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association
Environmental Research
2022
Improved microbial genomes and gene catalog of the chicken gut from metagenomic sequencing of high-fidelity long reads
GigaScience
2022
Music of metagenomics—a review of its applications, analysis pipeline, and associated tools
Functional & Integrative Genomics
2022
Genetic Diversity and Association Analysis for Carotenoid Content among Sprouts of Cowpea (Vigna unguiculata L. Walp)
International Journal of Molecular Sciences
2022
Effects of dietary tributyrin and physterol ester supplementation on growth performance, intestinal morphology, microbiota and metabolites in weaned piglets
Journal of Applied Microbiology
2022
Structure and Function of Rhizosphere Soil and Root Endophytic Microbial Communities Associated With Root Rot of Panax notoginseng
Frontiers in Plant Science
2022
Metagenomic profile of the fecal microbiome of preterm infants consuming mother’s own milk with bovine milk–based fortifier or infant formula: a cross-sectional study
The American Journal of Clinical Nutrition
2022
Acute and persistent effects of commonly used antibiotics on the gut microbiome and resistome in healthy adults
Cell Reports
2022
Metagenomic Screening for Lipolytic Genes Reveals an Ecology-Clustered Distribution Pattern
Frontiers in Microbiology
2022
Peripheral Blood Microbiome Analysis via Noninvasive Prenatal Testing Reveals the Complexity of Circulating Microbial Cell-Free DNA
Microbiology Spectrum
2022
Effects of Periodontal Treatment in Patients with Periodontitis and Kidney Failure: A Pilot Study
International Journal of Environmental Research and Public Health
2022
Association of Intratumoral Microbiota With Prognosis in Patients With Nasopharyngeal Carcinoma From 2 Hospitals in China
JAMA Oncology
2022
Differences in geological conditions have reshaped the structure and diversity of microbial communities in oily soils
Environmental Pollution
2022
In Vitro Infant Fecal Fermentation Characteristics of Human Milk Oligosaccharides Were Controlled by Initial Microbiota Composition More than Chemical Structure
Molecular Nutrition & Food Research
2022
Microbiome-metabolome analysis reveals cervical lesion alterations
Acta Biochimica et Biophysica Sinica
2022
Antioxidant potential of Pediococcus pentosaceus strains from the sow milk bacterial collection in weaned piglets
Microbiome
2022
Soil Organic Matter, Aggregates, and Microbial Characteristics of Intercropping Soybean under Straw Incorporation and N Input
Agriculture
2022
Distinct gut microbiota profiles of Asian honey bee (Apis cerana) foragers
Archives of Microbiology
2022
Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa
Genomics, Proteomics & Bioinformatics
2022
Composition and key-influencing factors of bacterial communities active in sulfur cycling of soda lake sediments
Archives of Microbiology
2022
Maternal regulation of biliary disease in neonates via gut microbial metabolites
Nature Communications
2022
Apple microbial communities and differences between two main Chinese producing regions
Food Quality and Safety
2022
Host Genetic Determinants of the Microbiome Across Animals: From Caenorhabditis elegans to Cattle
Annual Review of Animal Biosciences
2022
Deciphering the community structure and the functional potential of a hypersaline marsh microbial mat community
FEMS Microbiology Ecology
2022
Metabolism in the Niche: a Large-Scale Genome-Based Survey Reveals Inositol Utilization To Be Widespread among Soil, Commensal, and Pathogenic Bacteria
Microbiology Spectrum
2022
Salinity significantly affects intestinal microbiota and gene expression in striped catfish juveniles
Applied Microbiology and Biotechnology
2022
Clinical significance and intestinal microbiota composition in immunocompromised children with norovirus gastroenteritis
PLOS ONE
2022
Rural environment reduces allergic inflammation by modulating the gut microbiota
Gut Microbes
2022
Rhizosphere Biology
2022
The integrase of genomic island GIsul2 mediates the mobilization of GIsul2 and ISCR-related element CR2-sul2 unit through site-specific recombination
Frontiers in Microbiology
2022
Relationships Between Diurnal Changes of Tongue Coating Microbiota and Intestinal Microbiota
Frontiers in Cellular and Infection Microbiology
2022
Effects of antibiotics and metals on lung and intestinal microbiome dysbiosis after sub-chronic lower-level exposure of air pollution in ageing rats
Ecotoxicology and Environmental Safety
2022
The bacterial community structure in epiphytic biofilm on submerged macrophyte Potamogetom crispus L. and its contribution to heavy metal accumulation in an urban industrial area in Hangzhou
Journal of Hazardous Materials
2022
Massive annotation of bacterial l-asparaginases reveals their puzzling distribution and frequent gene transfer events
Scientific Reports
2022
Chemical and genomic analyses of a marine-derived Streptomyces sp. V17-9 producing amino acid derivatives and siderophores
Frontiers in Marine Science
2022
Analysis of bacterial and fungal communities in fermented fish (pla-ra) from Northeast Thailand
Archives of Microbiology
2022
Advancing antimicrobial resistance monitoring in surface waters with metagenomic and quasimetagenomic methods
PLOS Water
2022
Heterotrophy-coordinated diazotrophy is associated with significant changes of rare taxa in soil microbiome
Pedosphere
2022
Probiotics-induced Changes in Intestinal Structure and Gut Microbiota Are Associated with Reduced Rate of Pimpled Eggs in the Late Laying Period of Hens
The Journal of Poultry Science
2022
An insight into the changes in the microbial community of Kantuan‐sliced chicken during storage at different temperatures
Journal of Food Processing and Preservation
2022
TAMPA: interpretable analysis and visualization of metagenomics-based taxon abundance profiles
GigaScience
2022
The Gut Microbiome Modifies the Association Between a Mediterranean Diet and Diabetes in USA Hispanic/ Latino Population
The Journal of Clinical Endocrinology & Metabolism
2022
Soil diazotrophic abundance, diversity, and community assembly mechanisms significantly differ between glacier riparian wetlands and their adjacent alpine meadows
Frontiers in Microbiology
2022
Effects of Circadian Rhythm and Feeding Modes on Rumen Fermentation and Microorganisms in Hu Sheep
Microorganisms
2022
A More Diverse Cervical Microbiome Associates with Better Clinical Outcomes in Patients with Endometriosis: A Pilot Study
Biomedicines
2022
Analysis of prokaryotic microbial diversity in hot spring water from Bantang (China) using the targeted amplicon analysis
All Life
2022
Metagenomic and network analysis revealed wide distribution of antibiotic resistance genes in monkey gut microbiota
Microbiological Research
2022
Gut microbial community differentially characterizes patients with nonalcoholic fatty liver disease
Journal of Gastroenterology and Hepatology
2022
Neohesperidin Dihydrochalcone Ameliorates High-Fat Diet-Induced Glycolipid Metabolism Disorder in Rats
Journal of Agricultural and Food Chemistry
2022
The microbiome of the buffalo digestive tract
Nature Communications
2022
Intake of high-purity insoluble dietary fiber from Okara for the amelioration of colonic environment disturbance caused by acute ulcerative colitis
Food & Function
2022
Effects of Hydroxy-Alpha-Sanshool on Intestinal Metabolism in Insulin-Resistant Mice
Foods
2022
Metagenomics analysis of probable transmission of determinants of antibiotic resistance from wastewater to the environment – A case study
Science of The Total Environment
2022
Active Microbial Airborne Dispersal and Biomorphs as Confounding Factors for Life Detection in the Cell-Degrading Brines of the Polyextreme Dallol Geothermal Field
mBio
2022
Genomic analysis of the rare British Lop pig and identification of distinctive genomic markers
PLOS ONE
2022
Smoking by altering the peri-implant microbial community structure compromises the responsiveness to treatment
Frontiers in Cellular and Infection Microbiology
2021
A practical guide to amplicon and metagenomic analysis of microbiome data
Protein & Cell
2021
Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank
Microbiome
2021
Florfenicol Enhances Colonization of a Salmonella enterica Serovar Enteritidis floR Mutant with Major Alterations to the Intestinal Microbiota and Metabolome in Neonatal Chickens
Applied and Environmental Microbiology
2021
Discovery of a natural cyan blue: A unique food-sourced anthocyanin could replace synthetic brilliant blue
Science Advances
2021
Characterization of the gut microbiota in Chinese children with overweight and obesity using 16S rRNA gene sequencing
PeerJ
2021
Enhanced performance of microbial fuel cells with enriched ferrous iron oxidation microflora at room temperatures
Bioresource Technology
2021
Microbiome Analysis of Mucosal Ileoanal Pouch in Ulcerative Colitis Patients Revealed Impairment of the Pouches Immunometabolites
Cells
2021
The microbial metabolite p-Cresol induces autistic-like behaviors in mice by remodeling the gut microbiota
Microbiome
2021
Profiles and interrelationships of functional soil microbiomes involved in phosphorus cycling in diversified agricultural land‐use systems
Food and Energy Security
2021
Structure and Diversity of the Demersal Fish Assemblages off Psara Island (Central Aegean Sea) Caught by Experimental Bottom Trawling
Thalassas: An International Journal of Marine Sciences
2021
Effect of Fe3+ on the sludge properties and microbial community structure in a lab-scale A2O process
Science of The Total Environment
2021
Impact of 6-Month Exposure to Aerosols From Potential Modified Risk Tobacco Products Relative to Cigarette Smoke on the Rodent Gastrointestinal Tract
Frontiers in Microbiology
2021
Community diversity metrics, interactions, and metabolic functions of bacteria associated with municipal solid waste landfills at different maturation stages
MicrobiologyOpen
2021
Geospatial HIV-1 subtype C gp120 sequence diversity and its predicted impact on broadly neutralizing antibody sensitivity
PLOS ONE
2021
The Role of Gut Microbiota in Duodenal-Jejunal Bypass Surgery-Induced Improvement of Hepatic Steatosis in HFD-Fed Rats
Frontiers in Cellular and Infection Microbiology
2021
Effects of different long-term cropping systems on phoD-harboring bacterial community in red soils
Journal of Soils and Sediments
2021
A Metaphoric Design of Electronic Medical Record (EMR) for Periodic Health Examination Reports
International Journal of Cloud Applications and Computing
2021
Metagenomic Analysis Reveals the Fate of Antibiotic Resistance Genes in a Full-Scale Wastewater Treatment Plant in Egypt
Sustainability
2021
Metagenomic analysis of the cow, sheep, reindeer and red deer rumen
Scientific Reports
2021
Source Tracking and Global Distribution of the Tigecycline Non-Susceptible tet (X)
Microbiology Spectrum
2021
Neonatal hyperoxia induces gut dysbiosis and behavioral changes in adolescent mice
Journal of the Chinese Medical Association
2021
Metagenomic Analysis of the Respiratory Microbiome of a Broiler Flock from Hatching to Processing
Microorganisms
2021
Beyond Taxonomic Identification: Integration of Ecological Responses to a Soil Bacterial 16S rRNA Gene Database
Frontiers in Microbiology
2021
Dietary supplementation with Bacillus subtilis DSM 32315 alters the intestinal microbiota and metabolites in weaned piglets
Journal of Applied Microbiology
2021
Microbial abundance and community in constructed wetlands planted with Phragmites australis and Typha orientalis in winter
International Journal of Phytoremediation
2021
Differential Analysis of Longitudinal Methicillin-Resistant Staphylococcus aureus Colonization in Relation to Microbial Shifts in the Nasal Microbiome of Neonatal Piglets
mSystems
2021
Maternal Immune Activation Causes Social Behavior Deficits and Hypomyelination in Male Rat Offspring with an Autism-Like Microbiota Profile
Brain Sciences
2021
A More Diverse Cervical Microbiome Associates with Better Clinical Outcomes in Patients with Endometriosis
SSRN Electronic Journal
2021
Genome-wide dissection reveals diverse pathogenic roles of bacterial Tc toxins
PLOS Pathogens
2021
ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework
F1000Research
2021
Microbial transfers from permanent grassland ecosystems to milk in dairy farms in the Comté cheese area
Scientific Reports
2021
Archaeal overdominance close to life‐limiting conditions in geothermally influenced hypersaline lakes at the Danakil Depression, Ethiopia
Environmental Microbiology
2021
High-throughput cultivation and identification of bacteria from the plant root microbiota
Nature Protocols
2021
Maternal antibiotic exposure disrupts microbiota and exacerbates hyperoxia-induced lung injury in neonatal mice
Pediatric Research
2021
Distinctive distributions of halophilic Archaea across hypersaline environments within the Qaidam Basin of China
Archives of Microbiology
2021
Cross‐linkage between bacterial taxonomy and gene functions: a study of metagenome‐assembled genomes of gut microbiota in adult non‐alcoholic fatty liver disease
Alimentary Pharmacology & Therapeutics
2021
Dietary supplementation with Bacillus subtilis and xylo-oligosaccharides improves growth performance and intestinal morphology and alters intestinal microbiota and metabolites in weaned piglets
Food & Function
2021
Correlations between microbes and metabolites of hulless barley wines fermented with varieties of hulless barley and different starters
LWT
2021
Proteomic Identification of Bombyx mori Organelles Using the Engineered Ascorbate Peroxidase APEX and Development of Silkworm Organelle Proteome Database (SilkOrganPDB)
International Journal of Molecular Sciences
2021
Microorganisms of Two Thermal Pools on Kunashir Island, Russia
Biology
2021
Altered Gut Microbiome under Antiretroviral Therapy: Impact of Efavirenz and Zidovudine
ACS Infectious Diseases
2021
Maternal Vegetable and Fruit Consumption during Pregnancy and Its Effects on Infant Gut Microbiome
Nutrients
2021
Full-Scale Clinical Data and Reshaped Intestinal Microbiome on a Short-Term Low-Phosphorus Diet among Healthy Adults
Journal of Renal Nutrition
2021
In vitro fecal fermentation profiles and microbiota responses of pulse cell wall polysaccharides: enterotype effect
Food & Function
2021
Developmental Change of Yolk Microbiota and Its Role on Early Colonization of Intestinal Microbiota in Chicken Embryo
Animals
2021
Advances in Bioinformatics
2021
The Nexus between Fire and Soil Bacterial Diversity in the African Miombo Woodlands of Niassa Special Reserve, Mozambique
Microorganisms
2021
In vitro colonic fermentation profiles and microbial responses of propionylated high-amylose maize starch by individual Bacteroides-dominated enterotype inocula
Food Research International
2021
Exploring the Microbiome Analysis and Visualization Landscape
Frontiers in Bioinformatics
2021
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
eLife
2021
Human Milk Microbiota in an Indigenous Population Is Associated with Maternal Factors, Stage of Lactation, and Breastfeeding Practices
Current Developments in Nutrition
2021
ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework
F1000Research
2021
Changes in physicochemical properties, enzymatic activities, and the microbial community of soil significantly influence the continuous cropping of Panax quinquefolius L. (American ginseng)
Plant and Soil
2021
Deep hierarchical embedding for simultaneous modeling of GPCR proteins in a unified metric space
Scientific Reports
2021
The impact of caries status on supragingival plaque and salivary microbiome in children with mixed dentition: a cross-sectional survey
BMC Oral Health
2021
Stable-isotopic and metagenomic analyses reveal metabolic and microbial link of aerobic methane oxidation coupled to denitrification at different O2 levels
Science of The Total Environment
2021
Components of a Neanderthal gut microbiome recovered from fecal sediments from El Salt
Communications Biology
2021
The widespread IS200/IS605 transposon family encodes diverse programmable RNA-guided endonucleases
Science
2021
Pathogenic Vibrio Species Are Associated with Distinct Environmental Niches and Planktonic Taxa in Southern California (USA) Aquatic Microbiomes
mSystems
2021
Nitrogen has a greater influence than phosphorus on the diazotrophic community in two successive crop seasons in Northeast China
Scientific Reports
2021
Djulis Hull Improves Insulin Resistance and Modulates the Gut Microbiota in High-Fat Diet (HFD)-Induced Hyperglycaemia
Antioxidants
2021
Abundance and Diversity of Phages, Microbial Taxa, and Antibiotic Resistance Genes in the Sediments of the River Ganges Through Metagenomic Approach
Microbial Drug Resistance
2021
Simultaneous nitrogen and phosphorus removal from simulated digested piggery wastewater in a single-stage biofilm process coupling anammox and intracellular carbon metabolism
Bioresource Technology
2021
Accelerated discovery of novel glycoside hydrolases using targeted functional profiling and selective pressure on the rumen microbiome
Microbiome
2021
Genes Encoding Microbial Acyl Coenzyme A Binding Protein/Diazepam-Binding Inhibitor Orthologs Are Rare in the Human Gut Microbiome and Show No Links to Obesity
Applied and Environmental Microbiology
2021
Development of a consortium-based microbial agent beneficial to composting of distilled grain waste for Pleurotus ostreatus cultivation
Biotechnology for Biofuels
2021
Metagenomic profiling of host-associated bacteria from 8 datasets of the red alga Porphyra purpurea with MetaPhlAn3
Marine Genomics
2021
Different Associations between Tonsil Microbiome, Chronic Tonsillitis, and Intermittent Hypoxemia among Obstructive Sleep Apnea Children of Different Weight Status: A Pilot Case-Control Study
Journal of Personalized Medicine
2021
A Novel Carboxylesterase Derived from a Compost Metagenome Exhibiting High Stability and Activity towards High Salinity
Genes
2021
Phosphorus removal performance of microbial-enhanced constructed wetlands that treat saline wastewater
Journal of Cleaner Production
2021
Polerovirus genomic variation
Virus Evolution
2021
Combined Lycium barbarum polysaccharides and C-phycocyanin increase gastric Bifidobacterium relative abundance and protect against gastric ulcer caused by aspirin in rats
Nutrition & Metabolism
2021
Cell wall permeability of pinto bean cotyledon cells regulate in vitro fecal fermentation and gut microbiota
Food & Function
2021
High-throughput sequencing reveals significant diversity in the gut microbiomes of humpback (Chanodichthys dabryi) and crucian carp (Carassius carassius
Biologia
2021
16S rRNA gene amplicon-based metagenomic analysis of bacterial communities in the rhizospheres of selected mangrove species from Mida Creek and Gazi Bay, Kenya
PLOS ONE
2021
A Comparison of Production Performance, Egg Quality, and Cecal Microbiota in Laying Hens Receiving Graded Levels of Vitamin B12
Frontiers in Veterinary Science
2021
Comparative analysis of gut bacterial community composition during a single day cycle in Chinese mitten crab (Eriocheir sinensis)
Aquaculture Reports
2021
Gut microbiota associated with two species of domesticated honey bees from Thailand
Symbiosis
2021
Multiple acyl-CoA dehydrogenase deficiency kills Mycobacterium tuberculosis in vitro and during infection
Nature Communications
2021
Predicting Hyperoxia-Induced Lung Injury from Associated Intestinal and Lung Dysbiosis in Neonatal Mice
Neonatology
2021
Dynamic Interaction Between Mucosal Immunity and Microbiota Drives Nose and Pharynx Homeostasis of Common Carp (Cyprinus carpio) After SVCV Infection
Frontiers in Immunology
2021
Genome-Wide Variation in Betacoronaviruses
Journal of Virology
2021
Captivity Influences the Gut Microbiome of Rhinopithecus roxellana
Frontiers in Microbiology
2021
Genome Analysis of Streptomyces nojiriensis JCM 3382 and Distribution of Gene Clusters for Three Antibiotics and an Azasugar across the Genus Streptomyces
Microorganisms
2021
ggtreeExtra: Compact Visualization of Richly Annotated Phylogenetic Data
Molecular Biology and Evolution
2021
Rhizospheric pathogen proliferation and ROS production are associated with premature senescence of the osvha-a1 rice mutant
Journal of Experimental Botany
2021
Gut microbiome stability and dynamics in healthy donors and patients with non-gastrointestinal cancers
Journal of Experimental Medicine
2021
2021
Metataxonomic analysis of bacterial communities and mycotoxin reduction during processing of three millet varieties into ogi, a fermented cereal beverage
Food Research International
2020
Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic
PLOS Computational Biology
2020
The Association Between Smoking and Gut Microbiome in Bangladesh
Nicotine & Tobacco Research
2020
Evolution of NLR resistance genes with noncanonical N‐terminal domains in wild tomato species
New Phytologist
2020
Characterization of Metagenome-Assembled Genomes and Carbohydrate-Degrading Genes in the Gut Microbiota of Tibetan Pig
Frontiers in Microbiology
2020
Response of bacterial communities and plant-mediated soil processes to nitrogen deposition and precipitation in a desert steppe
Plant and Soil
2020
Metagenomic insights into the diversity of carbohydrate-degrading enzymes in the yak fecal microbial community
BMC Microbiology
2020
Newly Explored Faecalibacterium Diversity Is Connected to Age, Lifestyle, Geography, and Disease
Current Biology
2020
Studying the Temporal Dynamics of the Gut Microbiota Using Metabolic Stable Isotope Labeling and Metaproteomics
Analytical Chemistry
2020
Meta-analysis of cheese microbiomes highlights contributions to multiple aspects of quality
Nature Food
2020
Fish oil extracted from Coregonus peled improves obese phenotype and changes gut microbiota in a high-fat diet-induced mouse model of recurrent obesity
Food & Function
2020
An evolutionary path to altered cofactor specificity in a metalloenzyme
Nature Communications
2020
Closely Located but Totally Distinct: Highly Contrasting Prokaryotic Diversity Patterns in Raised Bogs and Eutrophic Fens
Microorganisms
2020
Belowground microbial communities respond to water deficit and are shaped by decades of maize hybrid breeding
Environmental Microbiology
2020
The Urinary Tract Microbiome in Older Women Exhibits Host Genetic and Environmental Influences
Cell Host & Microbe
2020
Phylogenomic analysis of 589 metagenome-assembled genomes encompassing all major prokaryotic lineages from the gut of higher termites
PeerJ
2020
An exploration of smokeless tobacco product nucleic acids: a combined metagenome and metatranscriptome analysis
Applied Microbiology and Biotechnology
2020
Melatonin Alleviates Neuroinflammation and Metabolic Disorder in DSS-Induced Depression Rats
Oxidative Medicine and Cellular Longevity
2020
Dynamic distribution of gut microbiota during embryonic development in chicken
Poultry Science
2020
Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants
mSystems
2020
Dynamics of Fecal Microbiota with and without Invasive Cervical Cancer and Its Application in Early Diagnosis
Cancers
2020
The human tumor microbiome is composed of tumor type–specific intracellular bacteria
Science
2020
An evaluation of the core bacterial communities associated with hypersaline environments in the Qaidam Basin, China
Archives of Microbiology
2020
Intestinal microbiology shapes population health impacts of diet and lifestyle risk exposures in Torres Strait Islander communities
eLife
2020
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
Nature Communications
2020
A recently evolved diflavin-containing monomeric nitrate reductase is responsible for highly efficient bacterial nitrate assimilation
Journal of Biological Chemistry
2020
Duodenal and rectal mucosal microbiota related to small intestinal bacterial overgrowth in diarrhea‐predominant irritable bowel syndrome
Journal of Gastroenterology and Hepatology
2020
Variation Profile of the Orthotospovirus Genome
Pathogens
2020
Zooplankton biogeographic boundaries in the California Current System as determined from metabarcoding
PLOS ONE
2020
Structural and functional differentiation of bacterial communities in post-coal mining reclamation soils of South Africa: bioindicators of soil ecosystem restoration
Scientific Reports
2020
Performance of hollow fiber ultrafiltration membrane in a full-scale drinking water treatment plant in China: A systematic evaluation during 7-year operation
Journal of Membrane Science
2020
Long-term Proton Pump Inhibitor Administration Caused Physiological and Microbiota Changes in Rats
Scientific Reports
2020
Contrasting microbiomes of raw and ripened Pu-erh tea associated with distinct chemical profiles
LWT
2020
Comparative genomics in infectious disease
Current Opinion in Microbiology
2020
Analysis of by high-throughput sequencing: Helicobacter pylori infection and salivary microbiome
BMC Oral Health
2020
First evidence of production of the lantibiotic nisin P
Scientific Reports
2020
Machine learning-aided analyses of thousands of draft genomes reveal specific features of activated sludge processes
Microbiome
2020
Bacterial and Archaeal Communities within an Ultraoligotrophic, High-altitude Lake in the Pre-Himalayas of the Qinghai-Tibet Plateau
Indian Journal of Microbiology
2020
An Integrated Multi-Disciplinary Perspective for Addressing Challenges of the Human Gut Microbiome
Metabolites
2020
Diversity and distribution of endophytic fungi in different tissues of Hevea brasiliensis native to the Brazilian Amazon forest
Mycological Progress
2020
Structure of Bacterial Communities in Phosphorus-Enriched Rhizosphere Soils
Applied Sciences
2020
Intestinal microbiome profiles in Oncomelania hupensis in mainland China
Acta Tropica
2020
Fecal bacteria can predict the efficacy of rifaximin in patients with diarrhea-predominant irritable bowel syndrome
Pharmacological Research
2020
Zearalenone-induced aberration in the composition of the gut microbiome and function impacts the ovary reserve
Chemosphere
2020
Gastroprotective effect of Lycium barbarum polysaccharides and C-phycocyanin in rats with ethanol-induced gastric ulcer
International Journal of Biological Macromolecules
2020
Evidence for Succession and Putative Metabolic Roles of Fungi and Bacteria in the Farming Mutualism of the Ambrosia Beetle Xyleborus affinis
mSystems
2020
A Differential Metabarcoding Approach to Describe Taxonomy Profiles of Bacteria and Archaea in the Saltern of Margherita di Savoia (Italy)
Microorganisms
2020
An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome
Cell Reports
2020
Alteration of the gut microbiota associated with childhood obesity by 16S rRNA gene sequencing
PeerJ
2020
Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome
Nature Communications
2020
CoMA – an intuitive and user-friendly pipeline for amplicon-sequencing data analysis
PLOS ONE
2020
Assembly of hundreds of novel bacterial genomes from the chicken caecum
Genome Biology
2020
Structure of the Mucosal and Stool Microbiome in Lynch Syndrome
Cell Host & Microbe
2020
The association between gut microbiome and anthropometric measurements in Bangladesh
Gut Microbes
2020
Iroki: automatic customization and visualization of phylogenetic trees
PeerJ
2020
Dominant soil bacteria and their ecological attributes across the deserts in northern China
European Journal of Soil Science
2020
Responses of wetland soil bacterial community and edaphic factors to two-year experimental warming and Spartina alterniflora invasion in Chongming Island
Journal of Cleaner Production
2020
Functional attributes and response of bacterial communities to nature-based fertilization during hydrocarbon remediation
International Biodeterioration & Biodegradation
2020
Strong oral plaque microbiome signatures for dental implant diseases identified by strain-resolution metagenomics
npj Biofilms and Microbiomes
2020
The physiological and toxicological effects of antibiotics on an interspecies insect model
Chemosphere
2020
Metagenomic data on bacterial diversity profiling of high-microbial-abundance tropical marine sponges Aaptos aaptos and Xestospongia muta from waters off terengganu, South China Sea
Data in Brief
2020
Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota
Nature Microbiology
2020
Metagenomics - Basics, Methods and Applications
2020
Mapping and refactoring pathway control through metabolic and protein engineering: The hexosamine biosynthesis pathway
Biotechnology Advances
2020
Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes
Communications Biology
2020
Genotypic and Phenotypic Characterization of Fecal Staphylococcus epidermidis Isolates Suggests Plasticity to Adapt to Different Human Body Sites
Frontiers in Microbiology
2020
Does Quorum Sensing play a role in microbial shifts along spontaneous fermentation of cocoa beans? An in silico perspective
Food Research International
2020
Living Trees: High-Quality Reproducible and Reusable Construction of Bacterial Phylogenetic Trees
Molecular Biology and Evolution
2020
Environmental DNA surveys detect distinct metazoan communities across abyssal plains and seamounts in the western Clarion Clipperton Zone
Molecular Ecology
2020
The distinct microbial community in Aurelia coerulea polyps versus medusae and its dynamics after exposure to 60Co-γ radiation
Environmental Research
2020
Raw wastewater irrigation for urban agriculture in three African cities increases the abundance of transferable antibiotic resistance genes in soil, including those encoding extended spectrum β-lactamases (ESBLs)
Science of The Total Environment
2020
Degradation of Recalcitrant Polyurethane and Xenobiotic Additives by a Selected Landfill Microbial Community and Its Biodegradative Potential Revealed by Proximity Ligation-Based Metagenomic Analysis
Frontiers in Microbiology
2020
Taxonomic Binning Approaches and Functional Characteristics of the Microbial Community during the Anaerobic Digestion of Hydrolyzed Corncob
Energies
2020
Distinct actions of the fermented beverage kefir on host behaviour, immunity and microbiome gut-brain modules in the mouse
Microbiome
2019
Biochar Effects on Bacterial Community and Metabolic Pathways in Continuously Cotton-Cropped Soil
Journal of Soil Science and Plant Nutrition
2019
Insights into the bacterial species and communities of a full-scale anaerobic/anoxic/oxic wastewater treatment plant by using third-generation sequencing
Journal of Bioscience and Bioengineering
2019
The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations
Cell Host & Microbe
2019
Wastewater used for urban agriculture in West Africa as a reservoir for antibacterial resistance dissemination
Environmental Research
2019
Influences of Iron Compounds on Microbial Diversity and Improvements in Organic C, N, and P Removal Performances in Constructed Wetlands
Microbial Ecology
2019
Patterns of protist diversity associated with raw sewage in New York City
The ISME Journal
2019
Lecture Notes in Computer Science
2019
Oil-Spill Triggered Shift in Indigenous Microbial Structure and Functional Dynamics in Different Marine Environmental Matrices
Scientific Reports
2019
Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species
Genome Biology
2019
Deep-Sea Biofilms, Historic Shipwreck Preservation and the Deepwater Horizon Spill
Frontiers in Marine Science
2019
Systematic survey of non-retroviral virus-like elements in eukaryotic genomes
Virus Research
2019
RETRACTED: The Variation of Nasal Microbiota Caused by Low Levels of Gaseous Ammonia Exposure in Growing Pigs
Frontiers in Microbiology
2019
Effects of Panax ginseng polysaccharides on the gut microbiota in mice with antibiotic-associated diarrhea
International Journal of Biological Macromolecules
2019
Trait‐based functional dietary analysis provides a better insight into the foraging ecology of bats
Journal of Animal Ecology
2019
NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice
Nature Biotechnology
2019
Viral abundance and diversity vary with depth in a southeastern United States agricultural ultisol
Soil Biology and Biochemistry
2019
Host genetics influence the rumen microbiota and heritable rumen microbial features associate with feed efficiency in cattle
Microbiome
2019
Genomic and metagenomic insights into the microbial community of a thermal spring
Microbiome
2019
Metagenomic analysis of gut microbiota alteration in a mouse model exposed to mycotoxin deoxynivalenol
Toxicology and Applied Pharmacology
2019
Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery
Nature Biotechnology
2019
Genome-Wide Variation in Potyviruses
Frontiers in Plant Science
2019
A Generic Multivariate Framework for the Integration of Microbiome Longitudinal Studies With Other Data Types
Frontiers in Genetics
2019
The immune-modulation and gut microbiome structure modification associated with long-term dietary supplementation of Lactobacillus rhamnosus using 16S rRNA sequencing analysis
Journal of Functional Foods
2019
Succession of embryonic and the intestinal bacterial communities of Atlantic salmon (Salmo salar) reveals stage‐specific microbial signatures
MicrobiologyOpen
2019
Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation
Nature Medicine
2019
Incense Burning is Associated with Human Oral Microbiota Composition
Scientific Reports
2019
An integrated metabolomics and 16S rRNA gene sequencing approach exploring the molecular pathways and potential targets behind the effects of Radix Scrophulariae
RSC Advances
2019
Integrating Microbiome Network: Establishing Linkages Between Plants, Microbes and Human Health
The Open Microbiology Journal
2019
Tuber borchii Shapes the Ectomycorrhizosphere Microbial Communities of Corylus avellana
Mycobiology
2019
MAGpy: a reproducible pipeline for the downstream analysis of metagenome-assembled genomes (MAGs)
Bioinformatics
2019
Daily Sampling Reveals Personalized Diet-Microbiome Associations in Humans
Cell Host & Microbe
2019
Potential Functions of the Gastrointestinal Microbiome Inhabiting the Length of the Rat Digest Tract
International Journal of Molecular Sciences
2019
Analysis of the Relationship Between the Degree of Dysbiosis in Gut Microbiota and Prognosis at Different Stages of Primary Hepatocellular Carcinoma
Frontiers in Microbiology
2019
Estradiol and high fat diet associate with changes in gut microbiota in female ob/ob mice
Scientific Reports
2019
Computational profiling of the gut–brain axis: microflora dysbiosis insights to neurological disorders
Briefings in Bioinformatics
2019
The neuroactive potential of the human gut microbiota in quality of life and depression
Nature Microbiology
2019
Antibiotic resistance genes are abundant and diverse in raw sewage used for urban agriculture in Africa and associated with urban population density
Environmental Pollution
2019
Suppressed N fixation and diazotrophs after four decades of fertilization
Microbiome
2019
Viral and bacterial community responses to stimulated Fe(III)‐bioreduction during simulated subsurface bioremediation
Environmental Microbiology
2019
Soil indigenous microbiome and plant genotypes cooperatively modify soybean rhizosphere microbiome assembly
BMC Microbiology
2019
Polysaccharide from Spirulina platensis ameliorates diphenoxylate-induced constipation symptoms in mice
International Journal of Biological Macromolecules
2019
Coherence of Microcystis species revealed through population genomics
The ISME Journal
2019
The Diversity of the Endobiotic Bacterial Communities in the Four Jellyfish Species
Polish Journal of Microbiology
2019
Mucin O-glycans facilitate symbiosynthesis to maintain gut immune homeostasis
EBioMedicine
2019
Microorganism's adaptation of Crucian carp may closely relate to its living environments
MicrobiologyOpen
2019
AnnoTree: visualization and exploration of a functionally annotated microbial tree of life
Nucleic Acids Research
2019
The microbiota profile and transcriptome analysis of immune response during metamorphosis stages in orange spotted grouper (Epinephelus coioides)
Fish & Shellfish Immunology
2019
Effects of different dietary copper sources on the growth and intestinal microbial communities of Pacific white shrimp ( Litopenaeus vannamei )
Aquaculture Nutrition
2019
Visual exploration of microbiome data
Journal of Biosciences
2019
Microbial life beyond the grave: 16S rRNA gene-based metagenomic analysis of bacteria diversity and their functional profiles in cemetery environments
Science of The Total Environment
2019
Metagenome data of bacterial diversity in pear (Pyrus communis L.) rhizospheres associated with Phytophthora infection and amino acid treatment
Data in Brief
2019
Hyperdiverse archaea near life limits at the polyextreme geothermal Dallol area
Nature Ecology & Evolution
2019
Soil pH is the primary factor driving the distribution and function of microorganisms in farmland soils in northeastern China
Annals of Microbiology
2019
Geochemical-Compositional-Functional Changes in Arctic Soil Microbiomes Post Land Submergence Revealed by Metagenomics
Microbes and Environments
2019
Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer
Nature Medicine
2019
Association of host genetics with intestinal microbial relevant to body weight in a chicken F2 resource population
Poultry Science
2019
FuncTree2: an interactive radial tree for functional hierarchies and omics data visualization
Bioinformatics
2019
Exploring Actinobacteria Associated With Rhizosphere and Endosphere of the Native Alpine Medicinal Plant Leontopodium nivale Subspecies alpinum
Frontiers in Microbiology
2019
In vitro fecal fermentation of propionylated high-amylose maize starch and its impact on gut microbiota
Carbohydrate Polymers
2019
The intestinal microbiota regulates host cholesterol homeostasis
BMC Biology
2019
Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
Cell
2019
Intestinal epithelial N-acylphosphatidylethanolamine phospholipase D links dietary fat to metabolic adaptations in obesity and steatosis
Nature Communications
2019
Ecological specificity of the metagenome in a set of lower termite species supports contribution of the microbiome to adaptation of the host
Animal Microbiome
2019
Comparison of chemical composition and airborne bacterial community structure in PM2.5 during haze and non-haze days in the winter in Guilin, China
Science of The Total Environment
2018
Shifts in prokaryotic communities under forest and grassland within a tropical mosaic landscape
Applied Soil Ecology
2018
A Fréchet tree distance measure to compare phylogeographic spread paths across trees
Scientific Reports
2018
HiMAP: Robust phylogenomics from highly multiplexed amplicon sequencing
Molecular Ecology Resources
2018
Characterization of microbial community structure and metabolic potential using Illumina MiSeq platform during the black garlic processing
Food Research International
2018
Bipartite interactions, antibiotic production and biosynthetic potential of the Arabidopsis leaf microbiome
Nature Microbiology
2018
Differentiated surface fungal communities at point of harvest on apple fruits from rural and peri-urban orchards
Scientific Reports
2018
Genome-resolved metagenomics of sugarcane vinasse bacteria
Biotechnology for Biofuels
2018
Profiling microbial strains in urban environments using metagenomic sequencing data
Biology Direct
2018
High-Glucose or -Fructose Diet Cause Changes of the Gut Microbiota and Metabolic Disorders in Mice without Body Weight Change
Nutrients
2018
Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome
Cell Host & Microbe
2018
Accounting for Bacterial Overlap Between Raw Water Communities and Contaminating Sources Improves the Accuracy of Signature-Based Microbial Source Tracking
Frontiers in Microbiology
2018
Comparison of Microbiota in Patients Treated by Surgery or Chemotherapy by 16S rRNA Sequencing Reveals Potential Biomarkers for Colorectal Cancer Therapy
Frontiers in Microbiology
2018
A Community-Based Culture Collection for Targeting Novel Plant Growth-Promoting Bacteria from the Sugarcane Microbiome
Frontiers in Plant Science
2018
A two-stage microbial association mapping framework with advanced FDR control
Microbiome
2018
Population Genomics
2018
A global atlas of the dominant bacteria found in soil
Science
2018
Airway microbial metagenomics
Microbes and Infection
2018
Sex-specific associations of infants’ gut microbiome with arsenic exposure in a US population
Scientific Reports
2018
Diversity and Proliferation of Metallo-β-Lactamases: a Clarion Call for Clinically Effective Metallo-β-Lactamase Inhibitors
Applied and Environmental Microbiology
2018
Cervicovaginal microbiota composition correlates with the acquisition of high‐risk human papillomavirus types
International Journal of Cancer
2018
A year in the life of a thrombolite: comparative metatranscriptomics reveals dynamic metabolic changes over diel and seasonal cycles
Environmental Microbiology
2018
Genomic Characterization of Sulphite Reducing Bacteria Isolated From the Dairy Production Chain
Frontiers in Microbiology
2018
The ecology and diversity of microbial eukaryotes in geothermal springs
The ISME Journal
2018
Elucidation of the bacterial communities associated with the harmful microalgae Alexandrium tamarense and Cochlodinium polykrikoides using nanopore sequencing
Scientific Reports
2018
Metagenomic Analysis of Bacteria, Fungi, Bacteriophages, and Helminths in the Gut of Giant Pandas
Frontiers in Microbiology
2018
Novel Insights into Selection for Antibiotic Resistance in Complex Microbial Communities
mBio
2018
Phylogenomic Mining of the Mints Reveals Multiple Mechanisms Contributing to the Evolution of Chemical Diversity in Lamiaceae
Molecular Plant
2018
Characterization of a microbial community developing during refrigerated storage of vacuum packed Yao meat, a Chinese traditional food
LWT
2018
US Immigration Westernizes the Human Gut Microbiome
Cell
2018
Gut Microbial Dysbiosis in Indian Children with Autism Spectrum Disorders
Microbial Ecology
2018
Effects of Graphene on Bacterial Community Diversity and Soil Environments of Haplic Cambisols in Northeast China
Forests
2018
DNA-SIP based genome-centric metagenomics identifies key long-chain fatty acid-degrading populations in anaerobic digesters with different feeding frequencies
The ISME Journal
2018
Fecal microbiota in the female prairie vole (Microtus ochrogaster)
PLOS ONE
2018
Microbial composition of spoiled industrial-scale Sichuan paocai and characteristics of the microorganisms responsible for paocai spoilage
International Journal of Food Microbiology
2018
Effects of wine-capStrophariacultivation on soil nutrients and bacterial communities in forestlands of northern China
PeerJ
2018
Pilot investigation on formation of 2,4,6-trichloroanisole via microbial O-methylation of 2,4,6-trichlorophenol in drinking water distribution system: An insight into microbial mechanism
Water Research
2018
The relationship between transmission time and clustering methods in Mycobacterium tuberculosis epidemiology
EBioMedicine
2018
ASaiM: a Galaxy-based framework to analyze microbiota data
GigaScience
2018
Mesophilic Sporeformers Identified in Whey Powder by Using Shotgun Metagenomic Sequencing
Applied and Environmental Microbiology
2018
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
Nature Communications
2018
Effects of Baicalein on Cortical Proinflammatory Cytokines and the Intestinal Microbiome in Senescence Accelerated Mouse Prone 8
ACS Chemical Neuroscience
2018
Metagenomic analysis of the bacterial communities and their functional profiles in water and sediments of the Apies River, South Africa, as a function of land use
Science of The Total Environment
2017
Hypersaline sapropels act as hotspots for microbial dark matter
Scientific Reports
2017
Leading role of TBP in the Establishment of Complexity in Eukaryotic Transcription Initiation Systems
Cell Reports
2017
Drought Stress Results in a Compartment-Specific Restructuring of the Rice Root-Associated Microbiomes
mBio
2017
A Distinctive and Host-Restricted Gut Microbiota in Populations of a Cactophilic Drosophila Species
Applied and Environmental Microbiology
2017
Experimental metagenomics and ribosomal profiling of the human skin microbiome
Experimental Dermatology
2017
Two cultivated legume plants reveal the enrichment process of the microbiome in the rhizocompartments
Molecular Ecology
2017
Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis
npj Biofilms and Microbiomes
2017
Bacterial diversity in goat milk from the Guanzhong area of China
Journal of Dairy Science
2017
Potential and active functions in the gut microbiota of a healthy human cohort
Microbiome
2017
A Model for Paired-Multinomial Data and Its Application to Analysis of Data on a Taxonomic Tree
Biometrics
2017
Genomic characterization of Nontuberculous Mycobacteria
Scientific Reports
2017
Regulation of life span by the gut microbiota in the short-lived African turquoise killifish
eLife
2017
A pilot study demonstrating the altered gut microbiota functionality in stable adults with Cystic Fibrosis
Scientific Reports
2017
Diversity and Biomineralization Potential of the Epilithic Bacterial Communities Inhabiting the Oldest Public Stone Monument of Cluj-Napoca (Transylvania, Romania)
Frontiers in Microbiology
2017
Approaches to in silico analysis of micobiome biodiversity metrics of radionuclide contaminated soils
Bìoresursi ì prirodokoristuvannâ
2017
Shotgun metagenomics, from sampling to analysis
Nature Biotechnology
2017
Community structure of the gut microbiota in sympatric species of wild Drosophila
Ecology Letters
2017
Metaproteomic analysis of microbiota in the fermented fish, Siniperca chuatsi
LWT
2017
Microbiomic differences in tumor and paired-normal tissue in head and neck squamous cell carcinomas
Genome Medicine
2017
Cxcr2 signaling and the microbiome suppress inflammation, bile duct injury, and the phenotype of experimental biliary atresia
PLOS ONE
2017
Strain-Level Metagenomic Analysis of the Fermented Dairy Beverage Nunu Highlights Potential Food Safety Risks
Applied and Environmental Microbiology
2017
Response of gut health and microbiota to sulfide exposure in Pacific white shrimp Litopenaeus vannamei
Fish & Shellfish Immunology
2017
A comprehensive analysis of breast cancer microbiota and host gene expression
PLOS ONE
2017
Metagenomic Analysis of the Gut Microbiome of the Common Black Slug Arion ater in Search of Novel Lignocellulose Degrading Enzymes
Frontiers in Microbiology
2017
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
Nature Biotechnology
2017
Bioinformatic Approaches Including Predictive Metagenomic Profiling Reveal Characteristics of Bacterial Response to Petroleum Hydrocarbon Contamination in Diverse Environments
Scientific Reports
2017
Effects of Actinomycete Secondary Metabolites on Sediment Microbial Communities
Applied and Environmental Microbiology
2017
Immunomodulatory Activities of a Fungal Protein Extracted from Hericium erinaceus through Regulating the Gut Microbiota
Frontiers in Immunology
2017
Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N2O formation
Scientific Reports
2017
Longitudinal sampling of the lung microbiota in individuals with cystic fibrosis
PLOS ONE
2017
Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling
mSystems
2017
Metagenomic Analysis of Hot Springs in Central India Reveals Hydrocarbon Degrading Thermophiles and Pathways Essential for Survival in Extreme Environments
Frontiers in Microbiology
2017
Soil classification predicts differences in prokaryotic communities across a range of geographically distant soils once pH is accounted for
Scientific Reports
2017
A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis
Microbiome
2017
Analysis and comparison of the wolf microbiome under different environmental factors using three different data of Next Generation Sequencing
Scientific Reports
2017
Methods in Molecular Biology
2017
Inheritance and Establishment of Gut Microbiota in Chickens
Frontiers in Microbiology
2017
Unveiling microbial interactions in stratified mat communities from a warm saline shallow pond
Environmental Microbiology
2017
Breast tissue, oral and urinary microbiomes in breast cancer
Oncotarget
2017
Metagenomic insight into the microbial networks and metabolic mechanism in anaerobic digesters for food waste by incorporating activated carbon
Scientific Reports
2017
Metaproteogenomics Reveals Taxonomic and Functional Changes between Cecal and Fecal Microbiota in Mouse
Frontiers in Microbiology
2017
Parallel evolution of non-homologous isofunctional enzymes in methionine biosynthesis
Nature Chemical Biology
2017
MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples
Nucleic Acids Research
2017
Elucidating Substrate Promiscuity within the FabI Enzyme Family
ACS Chemical Biology
2017
Bacterial community composition in the gut content of Lampetra japonica revealed by 16S rRNA gene pyrosequencing
PLOS ONE
2017
Microbial strain-level population structure and genetic diversity from metagenomes
Genome Research
2016
Genome reduction in an abundant and ubiquitous soil bacterium ‘Candidatus Udaeobacter copiosus’
Nature Microbiology
2016
Multiplex amplicon sequencing for microbe identification in community-based culture collections
Scientific Reports
2016
Bacterial Diversity and Community Structure of Supragingival Plaques in Adults with Dental Health or Caries Revealed by 16S Pyrosequencing
Frontiers in Microbiology
2016
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
Nucleic Acids Research
2016
IMNGS: A comprehensive open resource of processed 16S rRNA microbial profiles for ecology and diversity studies
Scientific Reports
2016
Transition from freshwater to seawater reshapes the skin-associated microbiota of Atlantic salmon
Scientific Reports
2016
Proton pump inhibitors affect the gut microbiome
Gut
2016
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
Molecular Biology and Evolution
2016
Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir
mSystems
2016
Urban Transit System Microbial Communities Differ by Surface Type and Interaction with Humans and the Environment
mSystems
2016
Comprehensive Genome Analysis of Carbapenemase-Producing Enterobacter spp.: New Insights into Phylogeny, Population Structure, and Resistance Mechanisms
mBio
2016
The Effects of LW-AFC on Intestinal Microbiome in Senescence-Accelerated Mouse Prone 8 Strain, a Mouse Model of Alzheimer’s Disease
Journal of Alzheimer's Disease
2016
The reproductive tracts of two malaria vectors are populated by a core microbiome and by gender- and swarm-enriched microbial biomarkers
Scientific Reports
2016
Effect of Saccharomyces boulardii and Mode of Delivery on the Early Development of the Gut Microbial Community in Preterm Infants
PLOS ONE
2016
Species‐specific diversity of novel bacterial lineages and differential abundance of predicted pathways for toxic compound degradation in scorpion gut microbiota
Environmental Microbiology
2016
Capturing the diversity of the human gut microbiota through culture-enriched molecular profiling
Genome Medicine
2016
The ecologist's field guide to sequence‐based identification of biodiversity
Methods in Ecology and Evolution
2016
Comparative analysis of bacterial diversity in the rhizosphere of tomato by culture-dependent and -independent approaches
Journal of Microbiology
2016
Modulation of gut microbiota dysbioses in type 2 diabetic patients by macrobiotic Ma-Pi 2 diet
British Journal of Nutrition
2016
Uncovering oral Neisseria tropism and persistence using metagenomic sequencing
Nature Microbiology
2015
Gut Microbiome: Westernization and the Disappearance of Intestinal Diversity
Current Biology
2015
The effect of excess copper on growth and physiology of important food crops: a review
Environmental Science and Pollution Research
2015
High-Specificity Targeted Functional Profiling in Microbial Communities with ShortBRED
PLOS Computational Biology
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