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2025
Exploiting taxonomic information from metagenomes to infer bacterial bioindicators and environmental quality at salmon aquaculture installations
Marine Pollution Bulletin
2025
Surveying marine biodiversity using eDNA metabarcoding of seawater and sediment in a high Arctic fjord during the polar night (Kongsfjorden, Svalbard)
Marine Environmental Research
2025
Inter-laboratory ring test for environmental DNA extraction protocols: implications for marine megafauna detection using three novel qPCR assays
Metabarcoding and Metagenomics
2025
Rainfall Drives Fluctuating Antibiotic Resistance Gene Levels in a Suburban Freshwater Lake
Water
2025
An approach for quantifying the influence of fish farm waste on hard-bottom habitats
Marine Pollution Bulletin
2025
Optimizing irrigation water use for cost-effective rhizoremediation of oil-contaminated soils with special reference to arid regions
Journal of Environmental Management
2025
Enhanced sedimentary ancient DNA (sedaDNA) retrieval from Antarctic diatoms
Marine Micropaleontology
2025
Unveiling community structure, antimicrobial resistance, and virulence factor of a wastewater sample of dairy farm located in mayurbhanj, odisha, India
Scientific Reports
2025
A critical review on the application of environmental DNA (eDNA) metagenomics in monitoring and assessing biological communities post marine oil spills
Science of The Total Environment
2025
Unveiling Structure of Tropical Estuarine Communities Through eDNA and Implications for Biomonitoring
Environmental DNA
2024
New metagenomic procedure for the investigation of the eukaryotes present in the digestive gland of Mytillus galloprovincialis
Aquaculture Reports
2024
Metabarcoding and co-occurrence network reveal significant effects of mariculture on benthic eukaryotic microalgal community: A case study in Daya Bay of the South China Sea
Marine Pollution Bulletin
2024
Towards a Standardized Operating Procedure for eDNA‐Based Biomonitoring in Coastal Marine Salmon Aquaculture
Environmental DNA
2024
Correlated environmental DNA and electrofished estimates of relative biomass for golden perch, Macquaria ambigua
Frontiers in Fish Science
2024
The impact of DNA extraction on the quantification of Legionella , with implications for ecological studies
Microbiology Spectrum
2024
Aquatic invasive species exhibit contrasting seasonal detectability patterns based on environmental DNA: Implications for monitoring
Freshwater Biology
2024
Validation of the Chemical and Biological Steps Required Implementing an Advanced Multi-Omics Approach for Assessing the Fate and Impact of Contaminants in Lagoon Sediments
Metabolites
2024
Impact of storage and extraction methods on peat soil microbiomes
PeerJ
2024
DNA, databases and diet: a case study on the parrotfish Scarus rivulatus
Coral Reefs
2024
Filter no more: A modified plankton sampler for rapid in‐water eDNA capture
Methods in Ecology and Evolution
2024
Environmental DNA storage and extraction method affects detectability for multiple aquatic invasive species
Environmental DNA
2024
Environmental DNA as a Tool for Better Understanding the Distribution, Abundance, And Health of Atlantic Salmon and Pacific Salmon
Fisheries
2023
Comparative analysis of the ocular surface microbiome in type-1, type-2 diabetes mellitus and healthy individuals
Journal of Applied Microbiology
2023
Characterization of the Rhizosphere Bacterial Microbiome and Coffee Bean Fermentation in the Castillo-Tambo and Bourbon Varieties in the Popayán-Colombia Plateau
BMC Plant Biology
2023
Sedimentary ancient DNA: a new paleogenomic tool for reconstructing the history of marine ecosystems
Frontiers in Marine Science
2023
Rapid detection of Sclerotium rolfsii causing dry stem and root rot disease in cassava by recombinase polymerase amplification technique (RPA) combined with CRISPR/Cas12a
Crop Protection
2023
Optimized Sample Processing Pipeline for PCR-Based Fungicide Resistance Quantification of Stubble-Borne Fungal Pathogens
Phytopathology®
2023
Comparative analysis of endophyte diversity of <i>Dendrobium officinale</i> lived on rock and tree
Plant Biotechnology
2023
Recovery of the soil fungal microbiome after steam disinfection to manage the plant pathogen Fusarium solani
Frontiers in Plant Science
2022
Seasonal phytoplankton and geochemical shifts in the subsurface chlorophyll maximum layer of a dimictic ferruginous lake
MicrobiologyOpen
2022
Quantifying habitat provisioning at macroalgal cultivation sites
Reviews in Aquaculture
2022
Does plastic type matter? Insights into non-indigenous marine larvae recruitment under controlled conditions
PeerJ
2022
Application of MinION sequencing as a tool for the rapid detection and characterization of Listeria monocytogenes in smoked salmon
Frontiers in Microbiology
2022
Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
Science of The Total Environment
2022
Amplicon sequence variant-based meiofaunal community composition revealed by DADA2 tool is compatible with species composition
Marine Genomics
2022
Aquaculture production of hatchling Hawaiian Bobtail Squid (Euprymna scolopes) is negatively impacted by decreasing environmental microbiome diversity
Journal of Applied Microbiology
2022
Environmental DNA-based profiling of benthic bacterial and eukaryote communities along a crude oil spill gradient in a coral reef in the Persian Gulf
Marine Pollution Bulletin
2022
Comparison of swab DNA extraction methods for examining sea star dermal microbiomes
Aquatic Microbial Ecology
2021
Microbial community succession on submerged vertebrate carcasses in a tidal river habitat: Implications for aquatic forensic investigations
Journal of Forensic Sciences
2021
Investigating variability in microbial community composition in replicate environmental DNA samples down lake sediment cores
PLOS ONE
2021
Grab what you can—an evaluation of spatial replication to decrease heterogeneity in sediment eDNA metabarcoding
PeerJ
2021
A Substrate-Independent Benthic Sampler (SIBS) for Hard and Mixed-Bottom Marine Habitats: A Proof-of-Concept Study
Frontiers in Marine Science
2021
Towards the Optimization of eDNA/eRNA Sampling Technologies for Marine Biosecurity Surveillance
Water
2021
Metabarcoding meiofauna biodiversity assessment in four beaches of Northern Colombia: effects of sampling protocols and primer choice
Hydrobiologia
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