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2025	An Integrative Computational Approach for Identifying Cotton Host Plant MicroRNAs with Potential to Abate CLCuKoV-Bur Infection Viruses Muhammad Aleem Ashraf, Imran Shahid, Judith K. Brown, Naitong Yu
2025	RNA silencing: the future potential strategy for engineering virus resistance in plants Physiology and Molecular Biology of Plants Ranjeet Kaur, Sambhavana Chauhan, Manchikatla Venkat Rajam
2025	In Silico Identification of Banana High-Confidence MicroRNA Binding Sites Targeting Banana Streak GF Virus Applied Microbiology Muhammad Aleem Ashraf, Babar Ali, Maryam Fareed, Ahsan Sardar, Eisha Saeed, Samaa Islam, Shaher Bano, Naitong Yu
2024	Predicting candidate miRNAs for targeting begomovirus to induce sequence-specific gene silencing in chilli plants Frontiers in Plant Science Vineeta Pandey, Aarshi Srivastava, Akhtar Ali, Ramwant Gupta, Muhammad Shafiq Shahid, Rajarshi Kumar Gaur
2024	Evaluación de la Patogenicidad de Tres Aislados del virus de la fruta rugosa marrón del tomate en plantas de tomate (Solanum lycopersicum L.) de Coahuila, México Revista Bio Ciencias Ubilfrido Vasquez Gutierrez, Gustavo Alberto Frías Treviño, Henry López López, Juan Carlos Delgado Ortiz , Luis Alberto Aguirre Uribe, Alberto Flores Olivas
2024	Target prediction of potential candidate miRNAs from Oryza sativa to silence the Pyricularia oryzae genome in rice blast Scientific Reports Tauheed Suddal, Mudassar Fareed Awan, Sajed Ali, Muhammad Farhan Sarwar, Shahzad Iqbal, Qurban Ali, Muhammad Arshad Javed, Muhammad Y. Alshahrani
2024	In Silico Identification of Sugarcane Genome-Encoded MicroRNAs Targeting Sugarcane Mosaic Virus Microbiology Research Wang Wenzhi, Muhammad Aleem Ashraf, Hira Ghaffar, Zainab Ijaz, Waqar ul Zaman, Huda Mazhar, Maryam Zulfqar, Shuzhen Zhang
2024	Engineered Resistance to Tobamoviruses Viruses John Peter Carr
2023	Genome-Wide Identification of Cotton MicroRNAs Predicted for Targeting Cotton Leaf Curl Kokhran Virus-Lucknow Microbiology Research Muhammad Aleem Ashraf, Judith K. Brown, Muhammad Shahzad Iqbal, Naitong Yu
2023	Advances and Prospects of Virus-Resistant Breeding in Tomatoes International Journal of Molecular Sciences Zolfaghar Shahriari, Xiaoxia Su, Kuanyu Zheng, Zhongkai Zhang
2023	In Silico Identification of Cassava Genome-Encoded MicroRNAs with Predicted Potential for Targeting the ICMV-Kerala Begomoviral Pathogen of Cassava Viruses Muhammad Aleem Ashraf, Babar Ali, Judith K. Brown, Imran Shahid, Naitong Yu
2023	In Silico Apple Genome-Encoded MicroRNA Target Binding Sites Targeting Apple Chlorotic Leaf Spot Virus Horticulturae Muhammad Aleem Ashraf, Nimra Murtaza, Judith K. Brown, Naitong Yu
2023	Candidate miRNAs from Oryza sativa for Silencing the Rice Tungro Viruses Agriculture Noor Amni Mohamed, Nik Muhammad Faris Nazmie Che Ngah, Azlan Abas, Noraini Talip, Murni Nazira Sarian, Hamizah Shahirah Hamezah, Sarahani Harun, Hamidun Bunawan
2023	In silico identification and validation of microRNAs from the genome of Solanum lycopersicum targeting Groundnut bud necrosis orthotospovirus Physiological and Molecular Plant Pathology M. Nivedha, S. Harish, K. Angappan, G. Karthikeyan, K.K. Kumar, M. Murugan, M. Jayakanthan
2023	Characterization of Tomato Brown Rugose Fruit Virus (ToBRFV) Detected in Czech Republic Diversity Ales Eichmeier, Miroslava Hejlova, Hana Orsagova, Lucie Frejlichova, Eliska Hakalova, Katerina Tomankova, Sarka Linhartova, Pavel Kulich, Vaclav Cermak, Jana Cechova
2023	Tomato Brown Rugose Fruit Virus Pandemic Annual Review of Phytopathology Nida’ M. Salem, Ahmad Jewehan, Miguel A. Aranda, Adrian Fox
2022	Tomato brown rugose fruit virus: An emerging and rapidly spreading plant RNA virus that threatens tomato production worldwide Molecular Plant Pathology Shaokang Zhang, Jonathan S. Griffiths, Geneviève Marchand, Mark A. Bernards, Aiming Wang
2022	Understanding tobamovirus-plant interactions: implications for breeding resistance to tomato brown rugose fruit virus Journal of Plant Pathology Mario Sánchez-Sánchez, Jimena Carrillo-Tripp, Emmanuel Aispuro-Hernández, Eber Addí Quintana-Obregón, Miguel Ángel Martínez-Téllez
2022	Computational Biology and Machine Learning Approaches Identify Rubber Tree (Hevea brasiliensis Muell. Arg.) Genome Encoded MicroRNAs Targeting Rubber Tree Virus 1 Applied Sciences Muhammad Aleem Ashraf, Hafiza Kashaf Tariq, Xiao-Wen Hu, Jallat Khan, Zhi Zou
2021	Potential targets for evaluation of sugarcane yellow leaf virus resistance in sugarcane cultivars: in silico sugarcane miRNA and target network prediction Biotechnology & Biotechnological Equipment Muhammad Aleem Ashraf, Fakiha Ashraf, Xiaoyan Feng, Xiaowen Hu, Linbo Shen, Jallat Khan, Shuzhen Zhang