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Robert Winkler
Bronze Contributor
7,025 Points

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Author 775
Preprint Author 140
Reviewer 35
Editor 6,075
Answers 65

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Bronze Contributor

Robert Winkler

PeerJ Editor, Author & Reviewer

Summary

Robert Winkler is Principal Investigator of the Laboratory of Biochemical and Instrumental Analysis at the CINVESTAV Unidad Irapuato and faculty member for the postgraduate programs Plant Biotechnology and Integrative Biology. His research topics include novel mass spectrometry techniques such as low-temperature plasma ionization and covalent protein staining, new approaches in the high-throughput metabolomic profiling of plants, computational mass spectrometry and proteomics.

Agricultural Science Analytical Chemistry (other) Biochemistry Bioengineering Bioinformatics Biotechnology Computational Biology Distributed & Parallel Computing Emerging Technologies Mass Spectrometry Novel Analytical Technologies Omics Technologies Operating Systems Plant Science Programming Languages Software Engineering Statistics Surface & Structural Imaging

Editing Sections

Plant Biology

Editing Journals

PeerJ - the Journal of Life & Environmental Sciences
PeerJ Computer Science
PeerJ Analytical Chemistry
PeerJ Materials Science

Work details

Professor, Head of Laboratory

CINVESTAV Irapuato
UGA-Langebio
Robert Winkler is Principal Investigator of the Laboratory of Biochemical and Instrumental Analysis at the CINVESTAV Unidad Irapuato and faculty member for the postgraduate programs Plant Biotechnology and Integrative Biology. His research topics include novel mass spectrometry techniques such as low-temperature plasma ionization and covalent protein staining, new approaches in the high-throughput metabolomic profiling of plants, computational mass spectrometry and proteomics.

Websites

  • Google Scholar
  • ORCID
  • ResearcherID

PeerJ Contributions

  • Articles 6
  • Preprints 3
  • Edited 45
  • Reviewed 1
  • Answers 3
June 9, 2021
Contrast optimization of mass spectrometry imaging (MSI) data visualization by threshold intensity quantization (TrIQ)
Ignacio Rosas-Román, Robert Winkler
https://doi.org/10.7717/peerj-cs.585
February 23, 2021
MeteoMex: open infrastructure for networked environmental monitoring and agriculture 4.0
Robert Winkler
https://doi.org/10.7717/peerj-cs.343
April 23, 2020
Proteomic analysis and interactions network in leaves of mycorrhizal and nonmycorrhizal sorghum plants under water deficit
Víctor Olalde-Portugal, José Luis Cabrera-Ponce, Argel Gastelum-Arellanez, Armando Guerrero-Rangel, Robert Winkler, Silvia Valdés-Rodríguez
https://doi.org/10.7717/peerj.8991 PubMed 32351787
April 16, 2020
Distinct gene expression and secondary metabolite profiles in suppressor of prosystemin-mediated responses2 (spr2) tomato mutants having impaired mycorrhizal colonization
Kena Casarrubias-Castillo, Josaphat M. Montero-Vargas, Nicole Dabdoub-González, Robert Winkler, Norma A. Martinez-Gallardo, Julia Zañudo-Hernández, Hamlet Avilés-Arnaut, John P. Délano-Frier
https://doi.org/10.7717/peerj.8888 PubMed 32337100
May 8, 2017
Formatting Open Science: agilely creating multiple document formats for academic manuscripts with Pandoc Scholar
Albert Krewinkel, Robert Winkler
https://doi.org/10.7717/peerj-cs.112
November 17, 2015
An evolving computational platform for biological mass spectrometry: workflows, statistics and data mining with MASSyPup64
Robert Winkler
https://doi.org/10.7717/peerj.1401 PubMed 26618079
February 13, 2019 - Version: 1
Distinct gene expression and secondary metabolite profiles for suboptimal mycorrhizal colonization in wild-type and the jasmonic acid deficient spr2 tomato mutant
Kena Casarrubias-Castillo, Josaphat M Montero-Vargas, Nicole Dabdoub-González, Robert Winkler, Norma A Martinez-Gallardo, Hamlet Aviles-Arnaut, John P Délano-Frier
https://doi.org/10.7287/peerj.preprints.27533v1
March 15, 2017 - Version: 2
Formatting Open Science: agilely creating multiple document formats for academic manuscripts with Pandoc Scholar
Albert Krewinkel, Robert Winkler
https://doi.org/10.7287/peerj.preprints.2648v2
September 9, 2015 - Version: 1
An evolving computational platform for biological mass spectrometry: Work-flows, statistics and Data Mining with MASSyPup64
Robert Winkler
https://doi.org/10.7287/peerj.preprints.1359v1

Academic Editor on

June 10, 2022
Genome-wide analysis of the strigolactone biosynthetic and signaling genes in grapevine and their response to salt and drought stresses
Yanyan Yu, Jinghao Xu, Chuanyin Wang, Yunning Pang, Lijian Li, Xinjie Tang, Bo Li, Qinghua Sun
https://doi.org/10.7717/peerj.13551 PubMed 35712547
May 13, 2022
A field test of forest canopy structure measurements with the CanopyCapture smartphone application
Christopher H. Lusk
https://doi.org/10.7717/peerj.13450 PubMed 35586134
May 11, 2022
QTL mapping and candidate gene analysis of low temperature germination in rice (Oryza sativa L.) using a genome wide association study
Feng Mao, Depeng Wu, Fangfang Lu, Xin Yi, Yujuan Gu, Bin Liu, Fuxia Liu, Tang Tang, Jianxin Shi, Xiangxiang Zhao, Lei Liu, Lilian Ji
https://doi.org/10.7717/peerj.13407 PubMed 35578671
April 8, 2022
Quantitative trait loci mapping and candidate gene analysis of stoma-related traits in wheat (Triticum aestivum L.) glumes
Ning Li, Fanfan Dong, Tongtong Liu, Jinwen Yang, Yugang Shi, Shuguang Wang, Daizhen Sun, Ruilian Jing
https://doi.org/10.7717/peerj.13262 PubMed 35419216
March 9, 2022
Distinct metabolic profiling is correlated with bisexual flowers formation resulting from exogenous ethephon induction in melon (Cucumis melo L.)
Siyu Fang, Yaqian Duan, Lanchun Nie, Wensheng Zhao, Jiahao Wang, Jiateng Zhao, Liping Zhao, Lei Wang
https://doi.org/10.7717/peerj.13088 PubMed 35287348
February 8, 2022
WildMinnie: compression of software-defined networking (SDN) rules with wildcard patterns
Hamed Khanmirza
https://doi.org/10.7717/peerj-cs.809
February 7, 2022
Empirical evaluation of an architectural technical debt index in the context of the Apache and ONAP ecosystems
Roberto Verdecchia, Ivano Malavolta, Patricia Lago, Ipek Ozkaya
https://doi.org/10.7717/peerj-cs.833
February 7, 2022
Micropropagation of pokeweed (Phytolacca americana L.) and comparison of phenolic, flavonoid content, and antioxidant activity between pokeweed callus and other parts
Attachai Trunjaruen, Prathan Luecha, Worasitikulya Taratima
https://doi.org/10.7717/peerj.12892 PubMed 35186483
December 22, 2021
A review of starch biosynthesis in cereal crops and its potential breeding applications in rice (Oryza Sativa L.)
Ruiqing Li, Wenyin Zheng, Meng Jiang, Huali Zhang
https://doi.org/10.7717/peerj.12678 PubMed 35036154
November 30, 2021
Stress-regulated elements in Lotus spp., as a possible starting point to understand signalling networks and stress adaptation in legumes
Ana B. Menéndez, Oscar Adolfo Ruiz
https://doi.org/10.7717/peerj.12110 PubMed 34909267
July 22, 2021
Introductory programming course: review and future implications
Uzma Omer, Muhammad Shoaib Farooq, Adnan Abid
https://doi.org/10.7717/peerj-cs.647
July 20, 2021
Inheritance of heat tolerance in perennial ryegrass (Lolium perenne, Poaceae): evidence from progeny array analysis
Wagdi S. Soliman, Ahmed M. Abbas, Stephen J. Novak, Masahiro Fujimori, Kazuhiro Tase, Shu-ichi Sugiyama
https://doi.org/10.7717/peerj.11782 PubMed 34322326
June 22, 2021
Characterization of auxin transporter AUX, PIN and PILS gene families in pineapple and evaluation of expression profiles during reproductive development and under abiotic stresses
Heming Zhao, Yan Maokai, Han Cheng, Mingliang Guo, Yanhui Liu, Lulu Wang, Shi Chao, Minqian Zhang, Linyi Lai, Yuan Qin
https://doi.org/10.7717/peerj.11410 PubMed 34221708
June 18, 2021
Compi: a framework for portable and reproducible pipelines
Hugo López-Fernández, Osvaldo Graña-Castro, Alba Nogueira-Rodríguez, Miguel Reboiro-Jato, Daniel Glez-Peña
https://doi.org/10.7717/peerj-cs.593
June 8, 2021
Exploring the differential stages of the pigment metabolism by pre-harvest bagging and post-harvest ethylene de-greening of Eureka lemon peel
Anjun Chen, Lu Liu, Xiaoping Liu, Yunyun Fu, Jie Li, Jianglin Zhao, Xiaoyan Hou
https://doi.org/10.7717/peerj.11504 PubMed 34164234
March 19, 2021
Enzymatic and transcriptomic analysis reveals the essential role of carbohydrate metabolism in freesia (Freesia hybrida) corm formation
Li Ma, Suqin Ding, Xueqing Fu, Zi Yan, Dongqin Tang
https://doi.org/10.7717/peerj.11078 PubMed 33777537
December 11, 2020
Exogenous melatonin improves salt stress adaptation of cotton seedlings by regulating active oxygen metabolism
Dan Jiang, Bin Lu, Liantao Liu, Wenjing Duan, Li Chen, Jin Li, Ke Zhang, Hongchun Sun, Yongjiang Zhang, Hezhong Dong, Cundong Li, Zhiying Bai
https://doi.org/10.7717/peerj.10486 PubMed 33365206
October 27, 2020
Co-application of bio-fertilizer and salicylic acid improves growth, photosynthetic pigments and stress tolerance in wheat under drought stress
Ammar Azmat, Humaira Yasmin, Muhammad Nadeem Hassan, Asia Nosheen, Rabia Naz, Muhammad Sajjad, Noshin Ilyas, Malik Nadeem Akhtar
https://doi.org/10.7717/peerj.9960 PubMed 33194369
October 21, 2020
DNMSO; an ontology for representing de novo sequencing results from Tandem-MS data
Savaş Takan, Jens Allmer
https://doi.org/10.7717/peerj.10216 PubMed 33150092
October 6, 2020
Increased photosynthesis and grain yields in maize grown with less irrigation water combined with density adjustment in semiarid regions
Donghua Liu, Qianmin Jia, Juan Li, Peng Zhang, Xiaolong Ren, Zhikuan Jia
https://doi.org/10.7717/peerj.9959 PubMed 33083115
August 31, 2020
Gametophytic self-incompatibility in Andean capuli (Prunus serotina subsp. capuli): allelic diversity at the S-RNase locus influences normal pollen-tube formation during fertilization
Milton Gordillo-Romero, Lisa Correa-Baus, Verónica Baquero-Méndez, María de Lourdes Torres, Carlos Vintimilla, Jose Tobar, Andrés F. Torres
https://doi.org/10.7717/peerj.9597 PubMed 32944417
August 27, 2020
Quantitative proteomics suggests changes in the carbohydrate metabolism of maize in response to larvae of the belowground herbivore Holotrichia parallela
Yu Pan, Shiwen Zhao, Zhun Wang, Xiao Wang, Xinxin Zhang, Yunshuo Lee, Jinghui Xi
https://doi.org/10.7717/peerj.9819 PubMed 32913681
August 21, 2020
Chemotype classification and biomarker screening of male Eucommia ulmoides Oliv. flower core collections using UPLC-QTOF/MS-based non-targeted metabolomics
Panfeng Liu, Lu Wang, Qingxin Du, Hongyan Du
https://doi.org/10.7717/peerj.9786 PubMed 32884862
August 18, 2020
Transcriptomic analysis reveals ethylene signal transduction genes involved in pistil development of pumpkin
Qingfei Li, Li Zhang, Feifei Pan, Weili Guo, Bihua Chen, Helian Yang, Guangyin Wang, Xinzheng Li
https://doi.org/10.7717/peerj.9677 PubMed 32879792
July 6, 2020
Melatonin improves the germination rate of cotton seeds under drought stress by opening pores in the seed coat
Yandan Bai, Shuang Xiao, Zichen Zhang, Yongjiang Zhang, Hongchun Sun, Ke Zhang, Xiaodan Wang, Zhiying Bai, Cundong Li, Liantao Liu
https://doi.org/10.7717/peerj.9450 PubMed 32704446
June 4, 2020
Contributions of Latin American researchers in the understanding of the novel coronavirus outbreak: a literature review
Karen Y. Fiesco-Sepúlveda, Luis Miguel Serrano-Bermúdez
https://doi.org/10.7717/peerj.9332 PubMed 32547890
April 8, 2020
Proteomic variations after short-term heat shock treatment reveal differentially expressed proteins involved in early microspore embryogenesis in cabbage (Brassica oleracea)
Henan Su, Guo Chen, Limei Yang, Yangyong Zhang, Yong Wang, Zhiyuan Fang, Honghao Lv
https://doi.org/10.7717/peerj.8897 PubMed 32337101
February 27, 2020
Lactoferrin quantification in cattle faeces by ELISA
Andrew S. Cooke, Kathryn A. Watt, Greg F. Albery, Eric R. Morgan, Jennifer A.J. Dungait
https://doi.org/10.7717/peerj.8631 PubMed 32368415
February 7, 2020
Survival of side grafts with scions from pure species Pinus engelmannii Carr. and the P. engelmannii × P. arizonica Engelm. var. arizonica hybrid
Alberto Pérez-Luna, Christian Wehenkel, José Ángel Prieto-Ruíz, Javier López-Upton, José Ciro Hernández-Díaz
https://doi.org/10.7717/peerj.8468 PubMed 32071810
December 20, 2019
Toward insights on determining factors for high activity in antimicrobial peptides via machine learning
Hao Li, Chanin Nantasenamat
https://doi.org/10.7717/peerj.8265 PubMed 31875156
November 6, 2019
Spatial genetic structure in Pinus cembroides Zucc. at population and landscape levels in central and northern Mexico
Luis C. García-Zubia, Javier Hernández-Velasco, José C. Hernández-Díaz, Sergio L. Simental-Rodríguez, Carlos A. López-Sánchez, Carmen Z. Quiñones-Pérez, Artemio Carrillo-Parra, Christian Wehenkel
https://doi.org/10.7717/peerj.8002 PubMed 31844562
October 16, 2019
Transcriptome analysis of the induction of somatic embryogenesis in Coffea canephora and the participation of ARF and Aux/IAA genes
Ana O. Quintana-Escobar, Geovanny I. Nic-Can, Rosa María Galaz Avalos, Víctor M. Loyola-Vargas, Elsa Gongora-Castillo
https://doi.org/10.7717/peerj.7752 PubMed 31637116
October 14, 2019
Genome-wide identification and expression analysis of the WRKY genes in sugar beet (Beta vulgaris L.) under alkaline stress
Guo-Qiang Wu, Zhi-Qiang Li, Han Cao, Jin-Long Wang
https://doi.org/10.7717/peerj.7817 PubMed 31632850
October 8, 2019
Effects of ferulic acid esterase-producing Lactobacillus fermentum and cellulase additives on the fermentation quality and microbial community of alfalfa silage
Rina Su, Kuikui Ni, Tianwei Wang, Xiaopan Yang, Jie Zhang, Yayong Liu, Weixiong Shi, Liu Yan, Chen Jie, Jin Zhong
https://doi.org/10.7717/peerj.7712 PubMed 31608168
October 8, 2019
Exogenous application of nitric oxide donors regulates short-term flooding stress in soybean
Muhammad Aaqil Khan, Abdul Latif Khan, Qari Muhammad Imran, Sajjad Asaf, Sang-Uk Lee, Byung-Wook Yun, Muhammad Hamayun, Tae-Han Kim, In-Jung Lee
https://doi.org/10.7717/peerj.7741 PubMed 31608169
July 17, 2019
Nutritional assessment, phytochemical composition and antioxidant analysis of the pulp and seed of medjool date grown in Mexico
Ricardo Salomón-Torres, Noé Ortiz-Uribe, Benjamín Valdez-Salas, Navor Rosas-González, Conrado García-González, Daniel Chávez, Iván Córdova-Guerrero, Laura Díaz-Rubio, María del Pilar Haro-Vázquez, José Luis Mijangos-Montiel, Antonio Morales-Maza, Padmanabhan Mahadevan, Robert Krueger
https://doi.org/10.7717/peerj.6821 PubMed 31360620
May 13, 2019
The effects of change decomposition on code review—a controlled experiment
Marco di Biase, Magiel Bruntink, Arie van Deursen, Alberto Bacchelli
https://doi.org/10.7717/peerj-cs.193
February 20, 2019
Yeasts producing zeatin
Rostislav A. Streletskii, Aleksey V. Kachalkin, Anna M. Glushakova, Andrey M. Yurkov, Vladimir V. Demin
https://doi.org/10.7717/peerj.6474 PubMed 30809453
November 23, 2018
Morpho-histological development of the somatic embryos of Typha domingensis
Guadalupe Hernández-Piedra, Violeta Ruiz-Carrera, Alberto J. Sánchez, Arlette Hernández-Franyutti, Alfonso Azpeitia-Morales
https://doi.org/10.7717/peerj.5952 PubMed 30505633
April 6, 2018
Surface display for metabolic engineering of industrially important acetic acid bacteria
Marshal Blank, Paul Schweiger
https://doi.org/10.7717/peerj.4626 PubMed 29637028
April 4, 2018
Predicting Pinus monophylla forest cover in the Baja California Desert by remote sensing
Jonathan G. Escobar-Flores, Carlos A. Lopez-Sanchez, Sarahi Sandoval, Marco A. Marquez-Linares, Christian Wehenkel
https://doi.org/10.7717/peerj.4603 PubMed 29637026
November 30, 2017
Examining publication bias—a simulation-based evaluation of statistical tests on publication bias
Andreas Schneck
https://doi.org/10.7717/peerj.4115 PubMed 29204324
August 28, 2017
DOSCHEDA: a web application for interactive chemoproteomics data analysis
Bruno Contrino, Eric Miele, Ronald Tomlinson, M. Paola Castaldi, Piero Ricchiuto
https://doi.org/10.7717/peerj-cs.129
July 3, 2017
Power1D: a Python toolbox for numerical power estimates in experiments involving one-dimensional continua
Todd C. Pataky
https://doi.org/10.7717/peerj-cs.125
June 12, 2017
Discrimination of Picea chihuahuana Martinez populations on the basis of climatic, edaphic, dendrometric, genetic and population traits
Iliana Karina Dominguez-Guerrero, Samantha del Rocío Mariscal-Lucero, José Ciro Hernández-Díaz, Berthold Heinze, José Ángel Prieto-Ruiz, Christian Wehenkel
https://doi.org/10.7717/peerj.3452 PubMed 28626616

Signed reviews submitted for articles published in PeerJ Note that some articles may not have the review itself made public unless authors have made them open as well.

April 10, 2019
MetaMSD: meta analysis for mass spectrometry data
So Young Ryu, George A. Wendt
https://doi.org/10.7717/peerj.6699 PubMed 30993040

3 Answers

1
accepted What happened to scholarlymarkdown.com?
1
accepted This paper in other formats
0
accepted What is a 'seminar script'?