By subject area
By Q&A topic
Pedro J. Silva
My PhD research centered on the characterization of enzymes involved in hydrogen metabolism in the hyperthermophile Pyrococcus furiosus. After completing my PhD, I became an Assistant Professor at Universidade Fernando Pessoa (Porto, Portugal). My research focus then moved to the computational study of enzymatic and organic reaction mechanisms using quantum chemistry methods. I have been an Academic Editor for PeerJ since September 2015.
Biochemistry Bioinformatics Biophysics Cell Biology Computational Biology Entomology Genetics Genomics Histology Marine Biology Mathematical Biology Metabolic Sciences Microbiology Molecular Biology Neuroscience Paleontology Parasitology Pharmacology Synthetic Biology Taxonomy Toxicology Virology Zoology
Articles published in PeerJ
Academic Editor on
13C based proteinogenic amino acid (PAA) and metabolic flux ratio analysis of Lactococcus lactis reveals changes in pentose phosphate (PP) pathway in response to agitation and temperature related stresses
Provided feedback on
This is a nice paper, even though the results are frustrating for those who expect that semi-empirical methods will soon become a useful alternative to DFT in real-life application...
Minor points: p. 19 "Procerain, a stable cysteine protease […] was found to have a molecular mass of 28.8KDa and an isoelectric point of 9.32." The original paper (Dubey, VK a...
Other minor points: Figs 25-35: The xx axis are labeled “enzyme concentration” instead of urea /CaCl2, NaCl, etc… concentration. Are those concentrations final concentrations or (...
Other Major points: The data on figs 9-18 are extensively described verbally, which is redundant as proper graphs tell the story much more effectively. An attempt to discuss,...
line 120: " the name of either the region, or various localities within the region (e.g., “Ireland” and “England” for the Western Atlantic)." Should it not be Eastern Atlantic?...