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Biao Chen, Yuxin Wei, Kefu Yu, Yanting Liang, Xiaopeng Yu, Zhiheng Liao, Zhenjun Qin, Lijia Xu, Zeming Bao

Yuanyuan Zhang, Lan Luo, Pin Gan, Xuan Chen, Xiaoli Li, Yan Pang, Xiaopeng Yu, Kefu Yu

Nicolas Oury, Cyril Noël, Stefano Mona, Didier Aurelle, Hélène Magalon

Chenying Wang, Xinqing Zheng, Hagit Kvitt, Huaxia Sheng, Danye Sun, Gaofeng Niu, Dan Tchernov, Tuo Shi

Nicole K. Johnston, Andrew S. Burns, Mark E. Hay

Sarah W. Davies, Matthew H. Gamache, Lauren I. Howe-Kerr, Nicola G. Kriefall, Andrew C. Baker, Anastazia T. Banaszak, Line Kolind Bay, Anthony J. Bellantuono, Debashish Bhattacharya, Cheong Xin Chan, Danielle C. Claar, Mary Alice Coffroth, Ross Cunning, Simon K. Davy, Javier del Campo, Erika M. Díaz-Almeyda, Jörg C. Frommlet, Lauren E. Fuess, Raúl A. González-Pech, Tamar L. Goulet, Kenneth D. Hoadley, Emily J. Howells, Benjamin C. C. Hume, Dustin W. Kemp, Carly D. Kenkel, Sheila A. Kitchen, Todd C. LaJeunesse, Senjie Lin, Shelby E. McIlroy, Ryan McMinds, Matthew R. Nitschke, Clinton A. Oakley, Raquel S. Peixoto, Carlos Prada, Hollie M. Putnam, Kate Quigley, Hannah G. Reich, James Davis Reimer, Mauricio Rodriguez-Lanetty, Stephanie M. Rosales, Osama S. Saad, Eugenia M. Sampayo, Scott R. Santos, Eiichi Shoguchi, Edward G. Smith, Michael Stat, Timothy G. Stephens, Marie E. Strader, David J. Suggett, Timothy D. Swain, Cawa Tran, Nikki Traylor-Knowles, Christian R. Voolstra, Mark E. Warner, Virginia M. Weis, Rachel M. Wright, Tingting Xiang, Hiroshi Yamashita, Maren Ziegler, Adrienne M. S. Correa, John Everett Parkinson

Iliana B. Baums, Valérie F. Chamberland, Nicolas S. Locatelli, Trinity Conn

Osama S. Saad, Xin Lin, Tsz Yan Ng, Ling Li, Put Ang, Senjie Lin

A. J. Veglia, K. Beavers, E. W. Van Buren, S. S. Meiling, E. M. Muller, T. B. Smith, D. M. Holstein, A. Apprill, M. E. Brandt, L. D. Mydlarz, A. M. S. Correa

Rosalyn Lo, Katherine E. Dougan, Yibi Chen, Sarah Shah, Debashish Bhattacharya, Cheong Xin Chan

V. H. Beltrán, E. Puill-Stephan, E. Howells, A. Flores-Moya, M. Doblin, E. Núñez-Lara, V. Escamilla, T. López, M. J. H. van Oppen

Tuo Shi, Gaofeng Niu, Hagit Kvitt, Xinqing Zheng, Qiaoyun Qin, Danye Sun, Zhiliang Ji, Dan Tchernov

Ana M. Palacio-Castro, Caroline E. Dennison, Stephanie M. Rosales, Andrew C. Baker

HB Wee, Y Kobayashi, JD Reimer

Ewelina T. Rubin, Ian C. Enochs, Colin Foord, Anderson B. Mayfield, Graham Kolodziej, Isabelle Basden, Derek P. Manzello

Sanqiang Gong, Guangjun Chai, Wei Sun, Fengli Zhang, Kefu Yu, Zhiyong Li

Susann Rossbach, Benjamin C. C. Hume, Anny Cárdenas, Gabriela Perna, Christian R. Voolstra, Carlos M. Duarte

Elizabeth Ann Lenz, Lucy A. Bartlett, Anastasios Stathakopoulos, Ilsa B. Kuffner

PH Wepfer, Y Nakajima, FKC Hui, S Mitarai, EP Economo

Osama S. Saad, Xin Lin, Tsz Yan Ng, Ling Li, Put Ang, Senjie Lin

Lauren I. Howe‐Kerr, Benedicte Bachelot, Rachel M. Wright, Carly D. Kenkel, Line K. Bay, Adrienne M. S. Correa

Barbara Porro, Cédric Mallien, Benjamin C. C. Hume, Alexis Pey, Emilie Aubin, Richard Christen, Christian R. Voolstra, Paola Furla, Didier Forcioli

Sudhanshi S. Jain, Lutfi Afiq-Rosli, Bar Feldman, Oren Levy, Jun Wei Phua, Benjamin J. Wainwright, Danwei Huang

Ryan J. Eckert, Ashley M. Reaume, Alexis B. Sturm, Michael S. Studivan, Joshua D. Voss

Danielle C. Claar, Samuel Starko, Kristina L. Tietjen, Hannah E. Epstein, Ross Cunning, Kim M. Cobb, Andrew C. Baker, Ruth D. Gates, Julia K. Baum

Danielle C. Claar, Kristina L. Tietjen, Kieran D. Cox, Ruth D. Gates, Julia K. Baum

Jingsheng Yu, Mengyue Guo, Wenjun Jiang, Meihua Yang, Xiaohui Pang

Danielle C. Claar, Jamie M. McDevitt‐Irwin, Melissa Garren, Rebecca Vega Thurber, Ruth D. Gates, Julia K. Baum

B. C. C. Hume, A. Mejia-Restrepo, C. R. Voolstra, M. L. Berumen

Ya-Yi Huang, Rodrigo Carballo-Bolaños, Chao-Yang Kuo, Shashank Keshavmurthy, Chaolun A. Chen

Sébastien Leveque, Lutfi Afiq-Rosli, Yin Cheong Aden Ip, Sudhanshi S. Jain, Danwei Huang

Sanqiang Gong, Lijia Xu, Kefu Yu, Fengli Zhang, Zhiyong Li

E. P. Fagan‐Jeffries, S. J. B. Cooper, T. M. Bradford, A. D. Austin

Cynthia Lewis, Karen Neely, Mauricio Rodriguez-Lanetty

Benjamin C. C. Hume, Edward G. Smith, Maren Ziegler, Hugh J. M. Warrington, John A. Burt, Todd C. LaJeunesse, Joerg Wiedenmann, Christian R. Voolstra

Héloïse Rouzé, Gaël Lecellier, Xavier Pochon, Gergely Torda, Véronique Berteaux-Lecellier

Iliana B. Baums, Andrew C. Baker, Sarah W. Davies, Andréa G. Grottoli, Carly D. Kenkel, Sheila A. Kitchen, Ilsa B. Kuffner, Todd C. LaJeunesse, Mikhail V. Matz, Margaret W. Miller, John E. Parkinson, Andrew A. Shantz

Zhenjun Qin, Kefu Yu, Biao Chen, Yinghui Wang, Jiayuan Liang, Wenwen Luo, Lijia Xu, Xueyong Huang

Tullia I. Terraneo, Marco Fusi, Benjamin C. C. Hume, Roberto Arrigoni, Christian R. Voolstra, Francesca Benzoni, Zac H. Forsman, Michael L. Berumen

Kate M. Quigley, Patricia A. Warner, Line K. Bay, Bette L. Willis

Sanqiang Gong, GuangJun Chai, Yilin Xiao, Lijia Xu, Kefu Yu, Jinlong Li, Fang Liu, Hao Cheng, Fengli Zhang, Baolin Liao, Zhiyong Li

KM Quigley, LK Bay, BL Willis

K. M. Quigley, A. C. Baker, M. A. Coffroth, B. L. Willis, M. J. H. van Oppen

Benjamin C.C. Hume, Maren Ziegler, Julie Poulain, Xavier Pochon, Sarah Romac, Emilie Boissin, Colomban de Vargas, Serge Planes, Patrick Wincker, Christian R. Voolstra

Guido Bonthond, Daniel G. Merselis, Katherine E. Dougan, Trevor Graff, William Todd, James W. Fourqurean, Mauricio Rodriguez-Lanetty

Maren Ziegler, Elizabeth Stone, Daniel Colman, Cristina Takacs‐Vesbach, Ursula Shepherd

2024	The microbiome dynamics and interaction of endosymbiotic Symbiodiniaceae and fungi are associated with thermal bleaching susceptibility of coral holobionts Applied and Environmental Microbiology Biao Chen, Yuxin Wei, Kefu Yu, Yanting Liang, Xiaopeng Yu, Zhiheng Liao, Zhenjun Qin, Lijia Xu, Zeming Bao
2024	Exposure to pentachlorophenol destructs the symbiotic relationship between zooxanthellae and host and induces pathema in coral Porites lutea Science of The Total Environment Yuanyuan Zhang, Lan Luo, Pin Gan, Xuan Chen, Xiaoli Li, Yan Pang, Xiaopeng Yu, Kefu Yu
2023	From genomics to integrative species delimitation? The case study of the Indo-Pacific Pocillopora corals Molecular Phylogenetics and Evolution Nicolas Oury, Cyril Noël, Stefano Mona, Didier Aurelle, Hélène Magalon
2023	Lineage-specific symbionts mediate differential coral responses to thermal stress Microbiome Chenying Wang, Xinqing Zheng, Hagit Kvitt, Huaxia Sheng, Danye Sun, Gaofeng Niu, Dan Tchernov, Tuo Shi
2023	Response of a temperate coral to temperature stress: A comparison of populations across sites Journal of Experimental Marine Biology and Ecology Nicole K. Johnston, Andrew S. Burns, Mark E. Hay
2023	Building consensus around the assessment and interpretation of Symbiodiniaceae diversity PeerJ Sarah W. Davies, Matthew H. Gamache, Lauren I. Howe-Kerr, Nicola G. Kriefall, Andrew C. Baker, Anastazia T. Banaszak, Line Kolind Bay, Anthony J. Bellantuono, Debashish Bhattacharya, Cheong Xin Chan, Danielle C. Claar, Mary Alice Coffroth, Ross Cunning, Simon K. Davy, Javier del Campo, Erika M. Díaz-Almeyda, Jörg C. Frommlet, Lauren E. Fuess, Raúl A. González-Pech, Tamar L. Goulet, Kenneth D. Hoadley, Emily J. Howells, Benjamin C. C. Hume, Dustin W. Kemp, Carly D. Kenkel, Sheila A. Kitchen, Todd C. LaJeunesse, Senjie Lin, Shelby E. McIlroy, Ryan McMinds, Matthew R. Nitschke, Clinton A. Oakley, Raquel S. Peixoto, Carlos Prada, Hollie M. Putnam, Kate Quigley, Hannah G. Reich, James Davis Reimer, Mauricio Rodriguez-Lanetty, Stephanie M. Rosales, Osama S. Saad, Eugenia M. Sampayo, Scott R. Santos, Eiichi Shoguchi, Edward G. Smith, Michael Stat, Timothy G. Stephens, Marie E. Strader, David J. Suggett, Timothy D. Swain, Cawa Tran, Nikki Traylor-Knowles, Christian R. Voolstra, Mark E. Warner, Virginia M. Weis, Rachel M. Wright, Tingting Xiang, Hiroshi Yamashita, Maren Ziegler, Adrienne M. S. Correa, John Everett Parkinson
2022	Coral Reefs of the World Iliana B. Baums, Valérie F. Chamberland, Nicolas S. Locatelli, Trinity Conn
2022	Species richness and generalists–specialists mosaicism of symbiodiniacean symbionts in corals from Hong Kong revealed by high-throughput ITS sequencing Coral Reefs Osama S. Saad, Xin Lin, Tsz Yan Ng, Ling Li, Put Ang, Senjie Lin
2022	Alphaflexivirus Genomes in Stony Coral Tissue Loss Disease-Affected, Disease-Exposed, and Disease-Unexposed Coral Colonies in the U.S. Virgin Islands Microbiology Resource Announcements A. J. Veglia, K. Beavers, E. W. Van Buren, S. S. Meiling, E. M. Muller, T. B. Smith, D. M. Holstein, A. Apprill, M. E. Brandt, L. D. Mydlarz, A. M. S. Correa
2022	Alignment-Free Analysis of Whole-Genome Sequences From Symbiodiniaceae Reveals Different Phylogenetic Signals in Distinct Regions Frontiers in Plant Science Rosalyn Lo, Katherine E. Dougan, Yibi Chen, Sarah Shah, Debashish Bhattacharya, Cheong Xin Chan
2021	Physiological diversity among sympatric, conspecific endosymbionts of coral (Cladocopium C1acro) from the Great Barrier Reef Coral Reefs V. H. Beltrán, E. Puill-Stephan, E. Howells, A. Flores-Moya, M. Doblin, E. Núñez-Lara, V. Escamilla, T. López, M. J. H. van Oppen
2021	Untangling ITS2 genotypes of algal symbionts in zooxanthellate corals Molecular Ecology Resources Tuo Shi, Gaofeng Niu, Hagit Kvitt, Xinqing Zheng, Qiaoyun Qin, Danye Sun, Zhiliang Ji, Dan Tchernov
2021	Variation in susceptibility among three Caribbean coral species and their algal symbionts indicates the threatened staghorn coral, Acropora cervicornis, is particularly susceptible to elevated nutrients and heat stress Coral Reefs Ana M. Palacio-Castro, Caroline E. Dennison, Stephanie M. Rosales, Andrew C. Baker
2021	Effects of temperature, salinity, and depth on Symbiodiniaceae lineages hosted by Palythoa tuberculosa near a river mouth Marine Ecology Progress Series HB Wee, Y Kobayashi, JD Reimer
2021	Molecular Mechanisms of Coral Persistence Within Highly Urbanized Locations in the Port of Miami, Florida Frontiers in Marine Science Ewelina T. Rubin, Ian C. Enochs, Colin Foord, Anderson B. Mayfield, Graham Kolodziej, Isabelle Basden, Derek P. Manzello
2021	Global-Scale Diversity and Distribution Characteristics of Reef-Associated Symbiodiniaceae via the Cluster-Based Parsimony of Internal Transcribed Spacer 2 Sequences Journal of Ocean University of China Sanqiang Gong, Guangjun Chai, Wei Sun, Fengli Zhang, Kefu Yu, Zhiyong Li
2021	Flexibility in Red Sea Tridacna maxima‐Symbiodiniaceae associations supports environmental niche adaptation Ecology and Evolution Susann Rossbach, Benjamin C. C. Hume, Anny Cárdenas, Gabriela Perna, Christian R. Voolstra, Carlos M. Duarte
2021	Physiological Differences in Bleaching Response of the Coral Porites astreoides Along the Florida Keys Reef Tract During High-Temperature Stress Frontiers in Marine Science Elizabeth Ann Lenz, Lucy A. Bartlett, Anastasios Stathakopoulos, Ilsa B. Kuffner
2020	Metacommunity ecology of Symbiodiniaceae hosted by the coral Galaxea fascicularis Marine Ecology Progress Series PH Wepfer, Y Nakajima, FKC Hui, S Mitarai, EP Economo
2020	Genome Size, rDNA Copy, and qPCR Assays for Symbiodiniaceae Frontiers in Microbiology Osama S. Saad, Xin Lin, Tsz Yan Ng, Ling Li, Put Ang, Senjie Lin
2020	Symbiont community diversity is more variable in corals that respond poorly to stress Global Change Biology Lauren I. Howe‐Kerr, Benedicte Bachelot, Rachel M. Wright, Carly D. Kenkel, Line K. Bay, Adrienne M. S. Correa
2020	The many faced symbiotic snakelocks anemone (Anemonia viridis, Anthozoa): host and symbiont genetic differentiation among colour morphs Heredity Barbara Porro, Cédric Mallien, Benjamin C. C. Hume, Alexis Pey, Emilie Aubin, Richard Christen, Christian R. Voolstra, Paola Furla, Didier Forcioli
2020	Homogenization of Endosymbiont Communities Hosted by Equatorial Corals during the 2016 Mass Bleaching Event Microorganisms Sudhanshi S. Jain, Lutfi Afiq-Rosli, Bar Feldman, Oren Levy, Jun Wei Phua, Benjamin J. Wainwright, Danwei Huang
2020	Depth Influences Symbiodiniaceae Associations Among Montastraea cavernosa Corals on the Belize Barrier Reef Frontiers in Microbiology Ryan J. Eckert, Ashley M. Reaume, Alexis B. Sturm, Michael S. Studivan, Joshua D. Voss
2020	Dynamic symbioses reveal pathways to coral survival through prolonged heatwaves Nature Communications Danielle C. Claar, Samuel Starko, Kristina L. Tietjen, Hannah E. Epstein, Ross Cunning, Kim M. Cobb, Andrew C. Baker, Ruth D. Gates, Julia K. Baum
2020	Chronic disturbance modulates symbiont (Symbiodiniaceae) beta diversity on a coral reef Scientific Reports Danielle C. Claar, Kristina L. Tietjen, Kieran D. Cox, Ruth D. Gates, Julia K. Baum
2020	Assessment of the Microbiome and Potential Aflatoxin Associated With the Medicinal Herb Platycladus orientalis Frontiers in Microbiology Jingsheng Yu, Mengyue Guo, Wenjun Jiang, Meihua Yang, Xiaohui Pang
2020	Increased diversity and concordant shifts in community structure of coral‐associated Symbiodiniaceae and bacteria subjected to chronic human disturbance Molecular Ecology Danielle C. Claar, Jamie M. McDevitt‐Irwin, Melissa Garren, Rebecca Vega Thurber, Ruth D. Gates, Julia K. Baum
2020	Fine-scale delineation of Symbiodiniaceae genotypes on a previously bleached central Red Sea reef system demonstrates a prevalence of coral host-specific associations Coral Reefs B. C. C. Hume, A. Mejia-Restrepo, C. R. Voolstra, M. L. Berumen
2020	Leptoria phrygia in Southern Taiwan shuffles and switches symbionts to resist thermal-induced bleaching Scientific Reports Ya-Yi Huang, Rodrigo Carballo-Bolaños, Chao-Yang Kuo, Shashank Keshavmurthy, Chaolun A. Chen
2019	Searching for phylogenetic patterns of Symbiodiniaceae community structure among Indo-Pacific Merulinidae corals PeerJ Sébastien Leveque, Lutfi Afiq-Rosli, Yin Cheong Aden Ip, Sudhanshi S. Jain, Danwei Huang
2019	Differences in Symbiodiniaceae communities and photosynthesis following thermal bleaching of massive corals in the northern part of the South China Sea Marine Pollution Bulletin Sanqiang Gong, Lijia Xu, Kefu Yu, Fengli Zhang, Zhiyong Li
2019	Intragenomic internal transcribed spacer 2 variation in a genus of parasitoid wasps (Hymenoptera: Braconidae): implications for accurate species delimitation and phylogenetic analysis Insect Molecular Biology E. P. Fagan‐Jeffries, S. J. B. Cooper, T. M. Bradford, A. D. Austin
2019	Recurring Episodes of Thermal Stress Shift the Balance From a Dominant Host-Specialist to a Background Host-Generalist Zooxanthella in the Threatened Pillar Coral, Dendrogyra cylindrus Frontiers in Marine Science Cynthia Lewis, Karen Neely, Mauricio Rodriguez-Lanetty
2019	SymPortal: A novel analytical framework and platform for coral algal symbiont next‐generation sequencing ITS2 profiling Molecular Ecology Resources Benjamin C. C. Hume, Edward G. Smith, Maren Ziegler, Hugh J. M. Warrington, John A. Burt, Todd C. LaJeunesse, Joerg Wiedenmann, Christian R. Voolstra
2019	Unique quantitative Symbiodiniaceae signature of coral colonies revealed through spatio-temporal survey in Moorea Scientific Reports Héloïse Rouzé, Gaël Lecellier, Xavier Pochon, Gergely Torda, Véronique Berteaux-Lecellier
2019	Considerations for maximizing the adaptive potential of restored coral populations in the western Atlantic Ecological Applications Iliana B. Baums, Andrew C. Baker, Sarah W. Davies, Andréa G. Grottoli, Carly D. Kenkel, Sheila A. Kitchen, Ilsa B. Kuffner, Todd C. LaJeunesse, Mikhail V. Matz, Margaret W. Miller, John E. Parkinson, Andrew A. Shantz
2019	Diversity of Symbiodiniaceae in 15 Coral Species From the Southern South China Sea: Potential Relationship With Coral Thermal Adaptability Frontiers in Microbiology Zhenjun Qin, Kefu Yu, Biao Chen, Yinghui Wang, Jiayuan Liang, Wenwen Luo, Lijia Xu, Xueyong Huang
2019	Environmental latitudinal gradients and host‐specificity shape Symbiodiniaceae distribution in Red Sea Porites corals Journal of Biogeography Tullia I. Terraneo, Marco Fusi, Benjamin C. C. Hume, Roberto Arrigoni, Christian R. Voolstra, Francesca Benzoni, Zac H. Forsman, Michael L. Berumen
2018	Unexpected mixed-mode transmission and moderate genetic regulation of Symbiodinium communities in a brooding coral Heredity Kate M. Quigley, Patricia A. Warner, Line K. Bay, Bette L. Willis
2018	Flexible Symbiotic Associations of Symbiodinium With Five Typical Coral Species in Tropical and Subtropical Reef Regions of the Northern South China Sea Frontiers in Microbiology Sanqiang Gong, GuangJun Chai, Yilin Xiao, Lijia Xu, Kefu Yu, Jinlong Li, Fang Liu, Hao Cheng, Fengli Zhang, Baolin Liao, Zhiyong Li
2018	Leveraging new knowledge of Symbiodinium community regulation in corals for conservation and reef restoration Marine Ecology Progress Series KM Quigley, LK Bay, BL Willis
2018	Ecological Studies K. M. Quigley, A. C. Baker, M. A. Coffroth, B. L. Willis, M. J. H. van Oppen
2018	An improved primer set and amplification protocol with increased specificity and sensitivity targeting the Symbiodinium ITS2 region PeerJ Benjamin C.C. Hume, Maren Ziegler, Julie Poulain, Xavier Pochon, Sarah Romac, Emilie Boissin, Colomban de Vargas, Serge Planes, Patrick Wincker, Christian R. Voolstra
2018	Inter-domain microbial diversity within the coral holobiontSiderastrea sidereafrom two depth habitats PeerJ Guido Bonthond, Daniel G. Merselis, Katherine E. Dougan, Trevor Graff, William Todd, James W. Fourqurean, Mauricio Rodriguez-Lanetty
2018	Patterns of Symbiodinium (Dinophyceae) diversity and assemblages among diverse hosts and the coral reef environment of Lizard Island, Australia Journal of Phycology Maren Ziegler, Elizabeth Stone, Daniel Colman, Cristina Takacs‐Vesbach, Ursula Shepherd
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